CsaV3_3G032210.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G032210.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	F-box/WD repeat-containing protein 4
Location	chr3: 27829025 .. 27829617 (+)
Sequence length	201
RNA-Seq Expression	CsaV3_3G032210.1
Synteny	CsaV3_3G032210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCAATTCTTCTTCACCGTCGCTTTCTCCGCAGTTCCTCTTACTCTCTACGTTCCTCCACTCCGTAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCTCGAACATACACCAATCGAGTCTATCCCCGAGCTCGGCATGTTTGGTTGAGGGTTTTGGATTGTATTCTTTGCAGCACCAGGTAGATTGTTTTTCTTCTTTTTTCTTTTCAAGATTTCCCAACCCCAGGACTCTCATCTCTCTGTAAATATTCTTTTCTTTTCATAAGATTTGATTGAGTGTGGTTTGTGGTGCTGACTCCTCATACTCTTCTTGCGGGATTCCGTTGTAAATTGCTTCATGTAAAATGTAAGAGGATGTGCTTCTACTTAACTTTTAGAAATAAAATAAAATAAAATGAAGAGATGATGTTCACAAGTTAATATGTGTTAGCTGTGATGTTCGGTTTCTCTTCTTACATTTAATTTTATGTTTTCGAAATTTGTTTTGCTGAATCTTGGGAGTGAAATTGCTTCACTGTCCTGACTTAACTAGTAGTTTTGATGTTATATACTTATGTTGATTCGTTTACAGTTGA

mRNA sequence

ATGCTCCAATTCTTCTTCACCGTCGCTTTCTCCGCAGTTCCTCTTACTCTCTACGTTCCTCCACTCCGTAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCTCGAACATACACCAATCGAGTCTATCCCCGAGCTCGGCATGTTTGGTTGAGGGTTTTGGATTGTATTCTTTGCAGCACCAGTTGA

Coding sequence (CDS)

ATGCTCCAATTCTTCTTCACCGTCGCTTTCTCCGCAGTTCCTCTTACTCTCTACGTTCCTCCACTCCGTAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCTCGAACATACACCAATCGAGTCTATCCCCGAGCTCGGCATGTTTGGTTGAGGGTTTTGGATTGTATTCTTTGCAGCACCAGTTGA

Protein sequence

MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDCILCSTS*

Homology

[Close]

BLAST of CsaV3_3G032210.1 vs. NCBI nr
Match: KAE8650936.1 (hypothetical protein Csa_001741 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 ILCSTS 67
          ILCSTS
Sbjct: 61 ILCSTS 66

[Close]

BLAST of CsaV3_3G032210.1 vs. NCBI nr
Match: XP_011651782.1 (uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED: uncharacterized protein LOC107991865 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 ILCST 66
          ILCST
Sbjct: 61 ILCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. NCBI nr
Match: XP_038905300.1 (uncharacterized protein LOC120091370 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 8.0e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 ILCST 66
          ILCST
Sbjct: 61 ILCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. NCBI nr
Match: KAG6581581.1 (hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 ILCST 66
          +LCST
Sbjct: 61 VLCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. NCBI nr
Match: XP_022934952.1 (uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 uncharacterized protein LOC111481923 [Cucurbita maxima] >XP_023527102.1 uncharacterized protein LOC111790442 [Cucurbita pepo subsp. pepo] >KAG7018085.1 hypothetical protein SDJN02_19951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 ILCST 66
          +LCST
Sbjct: 61 VLCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. ExPASy TrEMBL
Match: A0A0A0LD25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 ILCST 66
          ILCST
Sbjct: 61 ILCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. ExPASy TrEMBL
Match: A0A1S4E3E9 (uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 ILCST 66
          ILCST
Sbjct: 61 ILCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. ExPASy TrEMBL
Match: A0A6J1J7E0 (uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 ILCST 66
          +LCST
Sbjct: 61 VLCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. ExPASy TrEMBL
Match: A0A6J1F484 (uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC111441965 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 ILCST 66
          +LCST
Sbjct: 61 VLCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. ExPASy TrEMBL
Match: A0A6J1DEC8 (uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020277 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.3e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 ILCST 66
          +LCST
Sbjct: 61 VLCST 65

[Close]

BLAST of CsaV3_3G032210.1 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60
          MLQ FFT+AFSA PLTLY+PP+R   +FVETMEE+  E R Y+ R++PRAR  W R+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 ILCST 66
             S+
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of CsaV3_3G032210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650936.1	1.6e-28	100.00	hypothetical protein Csa_001741 [Cucumis sativus]	[more]
XP_011651782.1	6.1e-28	100.00	uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED...	[more]
XP_038905300.1	8.0e-28	98.46	uncharacterized protein LOC120091370 [Benincasa hispida]	[more]
KAG6581581.1	2.3e-27	96.92	hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934952.1	2.3e-27	96.92	uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 unchar...	[more]

BLAST of CsaV3_3G032210.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G032210.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD25	3.0e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1	[more]
A0A1S4E3E9	3.0e-28	100.00	uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=...	[more]
A0A6J1J7E0	1.1e-27	96.92	uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923...	[more]
A0A6J1F484	1.1e-27	96.92	uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC1114419...	[more]
A0A6J1DEC8	4.3e-27	95.38	uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of CsaV3_3G032210.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	3.0e-17	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..65
None	No IPR available	PANTHER	PTHR36616:SF4	BNAC07G32700D PROTEIN	coord: 1..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G032210	CsaV3_3G032210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G032210.1.exon1	CsaV3_3G032210.1.exon1	exon
CsaV3_3G032210.1.exon2	CsaV3_3G032210.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G032210.1.cds1	CsaV3_3G032210.1.cds1	CDS
CsaV3_3G032210.1.cds2	CsaV3_3G032210.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G032210.1	CsaV3_3G032210.1-protein	polypeptide