CsaV3_3G019920.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGTTCACATGTATTAAAGACGCTCTACCTACTCCACAATGGAAACAAGCAATGGATGAGGAATATGCTGCCTTACTCAAAGTTAAGACATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAAGGCTCAATTGGTTGCCAAAGGTTTTTTTATCAACACCATGACATTGATTTCTTTGAAACATTTAGCCCCGTAG ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGTTCACATGTATTAAAGACGCTCTACCTACTCCACAATGGAAACAAGCAATGGATGAGGAATATGCTGCCTTACTCAAAGTTAAGACATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAAGGCTCAATTGGTTGCCAAAGGTTTTTTTATCAACACCATGACATTGATTTCTTTGAAACATTTAGCCCCGTAG ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGTTCACATGTATTAAAGACGCTCTACCTACTCCACAATGGAAACAAGCAATGGATGAGGAATATGCTGCCTTACTCAAAGTTAAGACATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAAGGCTCAATTGGTTGCCAAAGGTTTTTTTATCAACACCATGACATTGATTTCTTTGAAACATTTAGCCCCGTAG MITRAKSGMFKSKAWFTCIKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGFFINTMTLISLKHLAP* Homology
BLAST of CsaV3_3G019920.1 vs. NCBI nr
Match: KGN57685.2 (hypothetical protein Csa_011032 [Cucumis sativus]) HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. NCBI nr
Match: XP_038885859.1 (uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida]) HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23 Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. NCBI nr
Match: XP_016899477.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]) HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23 Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. NCBI nr
Match: XP_016902198.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902199.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902200.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902201.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902202.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo]) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21 Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. NCBI nr
Match: TYJ96957.1 (putative mitochondrial protein [Cucumis melo var. makuwa]) HSP 1 Score: 110.5 bits (275), Expect = 8.3e-21 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13 Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10 Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10 Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07 Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy TrEMBL
Match: A0A1S4DU00 (uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=LOC107990535 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23 Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy TrEMBL
Match: A0A1S4E1U4 (uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21 Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy TrEMBL
Match: A0A5D3BCV9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold976G00020 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 4.0e-21 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy TrEMBL
Match: A0A2K3L2G4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g028632 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 9.0e-21 Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. ExPASy TrEMBL
Match: A0A5A7UCD7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00020 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) ) HSP 1 Score: 77.4 bits (189), Expect = 7.3e-15 Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 0
BLAST of CsaV3_3G019920.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10 Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|