CsaV3_3G019920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019920
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3: 15673316 .. 15673618 (+)
RNA-Seq ExpressionCsaV3_3G019920
SyntenyCsaV3_3G019920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGTTCACATGTATTAAAGACGCTCTACCTACTCCACAATGGAAACAAGCAATGGATGAGGAATATGCTGCCTTACTCAAAGTTAAGACATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAAGGCTCAATTGGTTGCCAAAGGTTTTTTTATCAACACCATGACATTGATTTCTTTGAAACATTTAGCCCCGTAG

mRNA sequence

ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGTTCACATGTATTAAAGACGCTCTACCTACTCCACAATGGAAACAAGCAATGGATGAGGAATATGCTGCCTTACTCAAAGTTAAGACATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAAGGCTCAATTGGTTGCCAAAGGTTTTTTTATCAACACCATGACATTGATTTCTTTGAAACATTTAGCCCCGTAG

Coding sequence (CDS)

ATGATTACCCGAGCAAAATCAGGTATGTTCAAGTCGAAAGCGTGGTTCACATGTATTAAAGACGCTCTACCTACTCCACAATGGAAACAAGCAATGGATGAGGAATATGCTGCCTTACTCAAAGTTAAGACATGGCACTTGGTACCCTCTTCTCCGTATCAAAATATTGTCGGTAACAAGTGGGTATTTCGACTCAAACGAAATTCTGATTGTTCCATTCAACGCTACAAGGCTCAATTGGTTGCCAAAGGTTTTTTTATCAACACCATGACATTGATTTCTTTGAAACATTTAGCCCCGTAG

Protein sequence

MITRAKSGMFKSKAWFTCIKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGFFINTMTLISLKHLAP*
Homology
BLAST of CsaV3_3G019920 vs. NCBI nr
Match: KGN57685.2 (hypothetical protein Csa_011032 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MITRAKSGMFKSKAWFTCIKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNK 60
           MITRAKSGMFKSKAWFTCIKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNK
Sbjct: 1   MITRAKSGMFKSKAWFTCIKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNK 60

Query: 61  WVFRLKRNSDCSIQRYKAQLVAKGFFINTMTLISLKHLAP 101
           WVFRLKRNSDCSIQRYKAQLVAKGFFINTMTLISLKHLAP
Sbjct: 61  WVFRLKRNSDCSIQRYKAQLVAKGFFINTMTLISLKHLAP 100

BLAST of CsaV3_3G019920 vs. NCBI nr
Match: XP_038885859.1 (uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 60/97 (61.86%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 1  MITRAKSGMFKSKAWF------------TCIKDALPTPQWKQAMDEEYAALLKVKTWHLV 60
          MITRAK+G+FK K+W             T I   L TPQWK+AMDE+Y+AL+K KTW LV
Sbjct: 1  MITRAKAGIFKPKSWIISKTTNWSQTETTRITTTLATPQWKKAMDEKYSALIKNKTWTLV 60

Query: 61 PSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
          PSSP   IVGNKW+FRLKRN D  IQRYKA+LV KGF
Sbjct: 61 PSSPSHIIVGNKWIFRLKRNMDGLIQRYKARLVVKGF 97

BLAST of CsaV3_3G019920 vs. NCBI nr
Match: XP_016899477.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 1   MITRAKSGMFKSKAWFTC------------IKDALPTPQWKQAMDEEYAALLKVKTWHLV 60
           MIT+AKS +FK K   +             IK AL TPQWKQAMDEEY+ALLK +TWHLV
Sbjct: 17  MITQAKSNIFKPKTLISTTAMDWSLTEPIRIKQALATPQWKQAMDEEYSALLKAQTWHLV 76

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
           P SP Q + G KWVFRLKRN+D SI+ YK +LVAKGF
Sbjct: 77  PPSPSQKVAGKKWVFRLKRNTDGSIRWYKTRLVAKGF 113

BLAST of CsaV3_3G019920 vs. NCBI nr
Match: XP_016902198.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902199.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902200.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902201.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902202.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 19 IKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKA 78
          +KDAL TPQWK+AMDEEY+ALLK  TW LVP SP QN+VG+KWVFRLKR++D SI RYKA
Sbjct: 7  VKDALATPQWKKAMDEEYSALLKANTWSLVPPSPSQNVVGSKWVFRLKRHTDGSILRYKA 66

Query: 79 QLVAKGF 86
          ++VAKGF
Sbjct: 67 RMVAKGF 73

BLAST of CsaV3_3G019920 vs. NCBI nr
Match: TYJ96957.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 8.3e-21
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 19 IKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKA 78
          IK AL TPQWKQAMDEEY+ALLK +TWHLVP SP Q + G KWVFRLKRN+D SI+ YK 
Sbjct: 11 IKQALATPQWKQAMDEEYSALLKAQTWHLVPPSPSQKVAGKKWVFRLKRNTDGSIRWYKT 70

Query: 79 QLVAKGF 86
          +LVAKGF
Sbjct: 71 RLVAKGF 77

BLAST of CsaV3_3G019920 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 1  MITRAKSGMFK-----SKAWFTCIKD-------ALPTPQWKQAMDEEYAALLKVKTWHLV 60
          M+TR+K+G+ K     S    T IK        AL  P W QAM EE  AL + KTW LV
Sbjct: 1  MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61 PSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
          P    QNI+G KWVF+ K +SD ++ R KA+LVAKGF
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

BLAST of CsaV3_3G019920 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-10
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 0

Query: 1    MITRAKSGMFKSKAWFTCIK------------DALPTPQWKQAMDEEYAALLKVKTWHLV 60
            M TRAK+G+ K    ++                AL   +W+ AM  E  A +   TW LV
Sbjct: 929  MGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988

Query: 61   PSSP-YQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
            P  P +  IVG +W+F  K NSD S+ RYKA+LVAKG+
Sbjct: 989  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGY 1026

BLAST of CsaV3_3G019920 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 1    MITRAKSGMFKSKAWFTCIK------------DALPTPQWKQAMDEEYAALLKVKTWHLV 60
            M TRAK G+ K    ++                A+   +W+QAM  E  A +   TW LV
Sbjct: 912  MATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLV 971

Query: 61   PSSPYQ-NIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
            P  P    IVG +W+F  K NSD S+ RYKA+LVAKG+
Sbjct: 972  PPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGY 1009

BLAST of CsaV3_3G019920 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 19  IKDALPTPQWKQ---AMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQR 78
           +K+ L  P+  Q   AM EE  +L K  T+ LV     +  +  KWVF+LK++ DC + R
Sbjct: 814 LKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVR 873

Query: 79  YKAQLVAKGF 86
           YKA+LV KGF
Sbjct: 874 YKARLVVKGF 883

BLAST of CsaV3_3G019920 vs. ExPASy TrEMBL
Match: A0A1S4DU00 (uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=LOC107990535 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 1   MITRAKSGMFKSKAWFTC------------IKDALPTPQWKQAMDEEYAALLKVKTWHLV 60
           MIT+AKS +FK K   +             IK AL TPQWKQAMDEEY+ALLK +TWHLV
Sbjct: 17  MITQAKSNIFKPKTLISTTAMDWSLTEPIRIKQALATPQWKQAMDEEYSALLKAQTWHLV 76

Query: 61  PSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
           P SP Q + G KWVFRLKRN+D SI+ YK +LVAKGF
Sbjct: 77  PPSPSQKVAGKKWVFRLKRNTDGSIRWYKTRLVAKGF 113

BLAST of CsaV3_3G019920 vs. ExPASy TrEMBL
Match: A0A1S4E1U4 (uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 19 IKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKA 78
          +KDAL TPQWK+AMDEEY+ALLK  TW LVP SP QN+VG+KWVFRLKR++D SI RYKA
Sbjct: 7  VKDALATPQWKKAMDEEYSALLKANTWSLVPPSPSQNVVGSKWVFRLKRHTDGSILRYKA 66

Query: 79 QLVAKGF 86
          ++VAKGF
Sbjct: 67 RMVAKGF 73

BLAST of CsaV3_3G019920 vs. ExPASy TrEMBL
Match: A0A5D3BCV9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold976G00020 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.0e-21
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 19 IKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKA 78
          IK AL TPQWKQAMDEEY+ALLK +TWHLVP SP Q + G KWVFRLKRN+D SI+ YK 
Sbjct: 11 IKQALATPQWKQAMDEEYSALLKAQTWHLVPPSPSQKVAGKKWVFRLKRNTDGSIRWYKT 70

Query: 79 QLVAKGF 86
          +LVAKGF
Sbjct: 71 RLVAKGF 77

BLAST of CsaV3_3G019920 vs. ExPASy TrEMBL
Match: A0A2K3L2G4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g028632 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.0e-21
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 0

Query: 1   MITRAKSGMFKSKAWF-------------TCIKDALPTPQWKQAMDEEYAALLKVKTWHL 60
           MITR K+G+FK K  F             TC+ +AL   +WKQAM +E+ AL+   TW L
Sbjct: 583 MITRGKAGIFKPKKLFSITKYPLPPSAEPTCVTEALKHSEWKQAMSDEFTALMNNGTWSL 642

Query: 61  VPSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
           VP  P+ N++GNKWVFRLKRN D SI RYKA+LVAKGF
Sbjct: 643 VPPQPHFNVIGNKWVFRLKRNPDGSISRYKARLVAKGF 680

BLAST of CsaV3_3G019920 vs. ExPASy TrEMBL
Match: A0A5A7UCD7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00020 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 19 IKDALPTPQWKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKA 78
          IK AL TPQWKQAMDEEY+ALLK +TWHLVP S  Q +VG KWVFRLKRN+D SI+ YK 
Sbjct: 11 IKQALATPQWKQAMDEEYSALLKAQTWHLVPPSSSQKVVGKKWVFRLKRNTDGSIRWYKT 70

Query: 79 QLVAKGF 86
          +LVAKGF
Sbjct: 71 RLVAKGF 77

BLAST of CsaV3_3G019920 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-15
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 1  MITRAKSGMFK-----SKAWFTCIKD-------ALPTPQWKQAMDEEYAALLKVKTWHLV 60
          M+TR+K+G+ K     S    T IK        AL  P W QAM EE  AL + KTW LV
Sbjct: 1  MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 61 PSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
          P    QNI+G KWVF+ K +SD ++ R KA+LVAKGF
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97

BLAST of CsaV3_3G019920 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 28  WKQAMDEEYAALLKVKTWHLVPSSPYQNIVGNKWVFRLKRNSDCSIQRYKAQLVAKGF 86
           W  AMD+E  A+    TW +    P +  +G KWV+++K NSD +I+RYKA+LVAKG+
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGY 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57685.21.2e-51100.00hypothetical protein Csa_011032 [Cucumis sativus][more]
XP_038885859.11.8e-2361.86uncharacterized mitochondrial protein AtMg00820-like [Benincasa hispida][more]
XP_016899477.15.2e-2360.82PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo][more]
XP_016902198.12.9e-2174.63PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucu... [more]
TYJ96957.18.3e-2174.63putative mitochondrial protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P925201.0e-1348.45Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Q94HW21.8e-1039.80Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT943.1e-1039.80Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109781.9e-0742.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A1S4DU002.5e-2360.82uncharacterized mitochondrial protein AtMg00820-like OS=Cucumis melo OX=3656 GN=... [more]
A0A1S4E1U41.4e-2174.63uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo ... [more]
A0A5D3BCV94.0e-2174.63Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A2K3L2G49.0e-2154.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol... [more]
A0A5A7UCD71.2e-2074.63Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
ATMG00820.17.3e-1548.45Reverse transcriptase (RNA-dependent DNA polymerase) [more]
AT4G23160.11.1e-1046.55cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019920.1CsaV3_3G019920.1mRNA