CsaV3_2G004130.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G004130.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Auxin-responsive protein
Location	chr2: 2140306 .. 2142296 (+)
Sequence length	594
RNA-Seq Expression	CsaV3_2G004130.1
Synteny	CsaV3_2G004130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAATAAAAAAATAAGTTGATGTATAATCATTTTAATTCAAACTACAGACCTCTTCATTAATAATATTTTGGTTAAGCCTTTGTTAGGAATAATTCGATATCCTAACATAAGAGAATCCTCAACCACAAGATATAGAGCGCGTGGCGAAGACGCACTTGGTAGGGAAGTGGGGGAAATGATAGGCTCTTTAGCTTTAATCGGCTTCTATAAAATACGTTTGAGCGTTATTTGGGCCAACAAGCATTTCCATTTCTTCTCTTCATAACTTTCCTCTCCGCCTTCTGTTTGTTTTCCGAGAAAAAAATCATATTGTACACAAATCCATCGGAAAATTCAGCAAACCCATTTCAGAGAAGCAAAAATTCAACAATGGCCTTTGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTGGGTCTCCCGGGAACTTCACCCGACGATCAATCTAATTCTCCCATCAACCGAACCAACTCCAACAAAAGAGCTTTGCCCTCCGACGACCAAAACTCCTCCGAATCTCGCCGAGAAATTAACTCTGATACCTCCAAATGCAGCCAAGAAAATACCCCTCCTACCAAGTAAGAACTTTTATCAAACAGTAAAGTTTTGGTTTATTATTTCTAAAAATTTAGAAATTAGTTAGATTTTGGGGTTTTTTTTCTTCTTAAATTAGAATTTGACAGAAATATTTTATATTTAATAGGGCACAAGTTGTGGGGTGGCCACCGGTGAGATCATTTCGAAAGAATTCTTTACAAGCAAAGAAAAAAGAAGAGACGGCGGCCGGAATGTTCATAAAAGTGAGCATGGATGGAGCTCCATTTCTTAGGAAAGTTGATCTTAAGATCTATCAAGGATATCCTGACCTTCTTCAAGCTTTGGAGAACATGTTCAAATTTTCTCTTGGTAAGTATATATTATTTCTTTCAAATATAATCCGATCTCTTAATTAGATCTTGAGATCTCTCTCTTTAATGATGAAAAATTATTGATGTTTTCTTTCTTTGAATGTTTTTTCAGGCAAGTTTTGTGAGAGAGAAGGATATAATGGGTCGGAATTTGTTCCAACGTATGAAGATAAAGATGGTGACTGGATGCTCGTCGGCGATGTTCCATGGGAGTAAGTTTCTTATCTCTACATAAAATAAAATGCATGCATGGATATTTTTACTCTATTAGTTATATTTGAACATTTTTTTACGTAATAGTTTGGTGAAGATCTGATTCTTTAGAAGATACATTAGCTACAACTACTCCTATTATCGAATAGTTTATGTAATATAATATAGTATCAAAACCAATTTAGATCGATTATTGATTGGTTTATATGAAATTTTGCAGAATGTTCATGAGCTCATGCAAGAAGCTAAGGATCATGAAAGGATCAGAAGCAAAAGGTTTAGGCTGTGGATCAGTGTGAAATAAAGAAAGAAAAAATGAAAGTGAAAAAAGGGATTAGAGAGCACCCCAAATTGCTCTCTTTTTTATAAGATCGTCGGAAAAGTCGTGAAAGTTAATCACAACCGCCATGGATTTGCCGGCGGAGTGCAACCGCAACCGCCGGCCGACTTGCCGATGATCTGACTGAATTCGATCTCGTGTAAATGTTTATGAAAAATCAGATCTTGATTTGCTTAGAGAGAGAGAAGGAGAAAGAGGGGTTGATGATGAAGAGTTAATTAAGACCCCAAAACAAATAAGTGAATTGAGTTTTTTTAATCTTTTTTTTGGTGATTATATTCATATTTATTTCTTGTGGGGGGATAATGTAATTGAATTCAAGATAGGTTGGAAATTATGTTAATTACCCCCAAAGAGTTTGTATATGTAATTGAATGTGATATATAATCATCAATTCCAATAGAAATGATCTTTCTTTCTTTTTTAATTCATGATATATATCTATTCTTATTGAGTTTAAATGTTGAAGCATATTATATTTAACATTTGTTTTATTTTCAACAAATAATTGACATATGAACTTT

mRNA sequence

ATGGCCTTTGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTGGGTCTCCCGGGAACTTCACCCGACGATCAATCTAATTCTCCCATCAACCGAACCAACTCCAACAAAAGAGCTTTGCCCTCCGACGACCAAAACTCCTCCGAATCTCGCCGAGAAATTAACTCTGATACCTCCAAATGCAGCCAAGAAAATACCCCTCCTACCAAGGCACAAGTTGTGGGGTGGCCACCGGTGAGATCATTTCGAAAGAATTCTTTACAAGCAAAGAAAAAAGAAGAGACGGCGGCCGGAATGTTCATAAAAGTGAGCATGGATGGAGCTCCATTTCTTAGGAAAGTTGATCTTAAGATCTATCAAGGATATCCTGACCTTCTTCAAGCTTTGGAGAACATGTTCAAATTTTCTCTTGGCAAGTTTTGTGAGAGAGAAGGATATAATGGGTCGGAATTTGTTCCAACGTATGAAGATAAAGATGGTGACTGGATGCTCGTCGGCGATGTTCCATGGGAAATGTTCATGAGCTCATGCAAGAAGCTAAGGATCATGAAAGGATCAGAAGCAAAAGGTTTAGGCTGTGGATCAGTGTGA

Coding sequence (CDS)

ATGGCCTTTGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTGGGTCTCCCGGGAACTTCACCCGACGATCAATCTAATTCTCCCATCAACCGAACCAACTCCAACAAAAGAGCTTTGCCCTCCGACGACCAAAACTCCTCCGAATCTCGCCGAGAAATTAACTCTGATACCTCCAAATGCAGCCAAGAAAATACCCCTCCTACCAAGGCACAAGTTGTGGGGTGGCCACCGGTGAGATCATTTCGAAAGAATTCTTTACAAGCAAAGAAAAAAGAAGAGACGGCGGCCGGAATGTTCATAAAAGTGAGCATGGATGGAGCTCCATTTCTTAGGAAAGTTGATCTTAAGATCTATCAAGGATATCCTGACCTTCTTCAAGCTTTGGAGAACATGTTCAAATTTTCTCTTGGCAAGTTTTGTGAGAGAGAAGGATATAATGGGTCGGAATTTGTTCCAACGTATGAAGATAAAGATGGTGACTGGATGCTCGTCGGCGATGTTCCATGGGAAATGTTCATGAGCTCATGCAAGAAGCTAAGGATCATGAAAGGATCAGAAGCAAAAGGTTTAGGCTGTGGATCAGTGTGA

Protein sequence

MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIMKGSEAKGLGCGSV*

Homology

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BLAST of CsaV3_2G004130.1 vs. NCBI nr
Match: XP_004139234.1 (auxin-responsive protein IAA4 [Cucumis sativus] >KGN60809.1 hypothetical protein Csa_019290 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 2.3e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY 120
           KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY
Sbjct: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY 120

Query: 121 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180
           QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK
Sbjct: 121 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180

Query: 181 LRIMKGSEAKGLGCGSV 198
           LRIMKGSEAKGLGCGSV
Sbjct: 181 LRIMKGSEAKGLGCGSV 197

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BLAST of CsaV3_2G004130.1 vs. NCBI nr
Match: XP_008455974.1 (PREDICTED: auxin-induced protein 22D-like [Cucumis melo] >KAA0063607.1 auxin-induced protein 22D-like [Cucumis melo var. makuwa] >TYK18420.1 auxin-induced protein 22D-like [Cucumis melo var. makuwa])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQN  ESRREINSD S
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEE-TAAGMFIKVSMDGAPFLRKVDLKI 120
           KC+QENTPPTKAQVVGWPPVRSFRKN LQAKKKEE  AAGMFIKVSMDGAPFLRKVDLKI
Sbjct: 61  KCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAAGMFIKVSMDGAPFLRKVDLKI 120

Query: 121 YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180
           YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK
Sbjct: 121 YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180

Query: 181 KLRIMKGSEAKGLGCGSV 198
           KLRIMKGSEAKGLGCGSV
Sbjct: 181 KLRIMKGSEAKGLGCGSV 198

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BLAST of CsaV3_2G004130.1 vs. NCBI nr
Match: XP_038889147.1 (auxin-induced protein 22D-like [Benincasa hispida])

HSP 1 Score: 367.5 bits (942), Expect = 7.4e-98
Identity = 185/200 (92.50%), Postives = 188/200 (94.00%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQS SPINR NSNKRALPSDDQN  ESRREINSD +
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRANSNKRALPSDDQNLPESRREINSDPT 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAA---GMFIKVSMDGAPFLRKVDL 120
           KC+QEN PPTKAQVVGWPPVRSFRKN  QAKKK+E AA   GMFIKVSMDGAPFLRKVDL
Sbjct: 61  KCNQENPPPTKAQVVGWPPVRSFRKNCFQAKKKDEAAAAATGMFIKVSMDGAPFLRKVDL 120

Query: 121 KIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSS 180
           KIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSS
Sbjct: 121 KIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSS 180

Query: 181 CKKLRIMKGSEAKGLGCGSV 198
           CKKLRIMKGSEAKGLGCGSV
Sbjct: 181 CKKLRIMKGSEAKGLGCGSV 199

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BLAST of CsaV3_2G004130.1 vs. NCBI nr
Match: BAA85822.1 (Aux/IAA protein, partial [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 3.2e-93
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK 71
           TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK
Sbjct: 1   TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK 60

Query: 72  AQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALE 131
           AQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALE
Sbjct: 61  AQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALE 120

Query: 132 NMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIMK 186
           NMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK+LRIMK
Sbjct: 121 NMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMK 174

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BLAST of CsaV3_2G004130.1 vs. NCBI nr
Match: KAG6599309.1 (Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345.1 bits (884), Expect = 3.9e-91
Identity = 176/203 (86.70%), Postives = 180/203 (88.67%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDSNSDLT 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAA------GMFIKVSMDGAPFLRK 120
           K  QEN PPTKAQVVGWPPVRSFRKN  QAKKK+E AA      GMFIKVSMDGAPFLRK
Sbjct: 61  KSDQENPPPTKAQVVGWPPVRSFRKNCFQAKKKDEVAAATTAAGGMFIKVSMDGAPFLRK 120

Query: 121 VDLKIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMF 180
           VDLK YQGYP+LLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMF
Sbjct: 121 VDLKTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMF 180

Query: 181 MSSCKKLRIMKGSEAKGLGCGSV 198
           M SCKKLRIMKGSEAKGL CGSV
Sbjct: 181 MGSCKKLRIMKGSEAKGLSCGSV 202

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BLAST of CsaV3_2G004130.1 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-62
Identity = 121/194 (62.37%), Postives = 150/194 (77.32%), Query Frame = 0


Query: 2   AFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSK 61
           ++EK+LNL+ATELRLGLPG+   ++  +      SNKR+ P      S S     SD +K
Sbjct: 7   SYEKELNLKATELRLGLPGSDEPEKRAT----ARSNKRSSPEASDEESISN---GSDVTK 66

Query: 62  CSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAA-GMFIKVSMDGAPFLRKVDLKIY 121
                 PP KAQVVGWPP+RS+RKN++Q KK+EE+   GM++KVSM GAP+LRK+DLK+Y
Sbjct: 67  -EDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVY 126

Query: 122 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 181
           + YP+LL+ALENMFK   G++ EREGYNGSE+ PTYEDKDGDWMLVGDVPW MF+SSCK+
Sbjct: 127 KSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKR 186

Query: 182 LRIMKGSEAKGLGC 195
           LRIMKGSEAKGLGC
Sbjct: 187 LRIMKGSEAKGLGC 192

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.2e-62
Identity = 122/203 (60.10%), Postives = 155/203 (76.35%), Query Frame = 0


Query: 2   AFEKDLNLEATELRLGLPGTSPDDQSNSPINRT---NSNKRALPSDDQNSSESRREINSD 61
           ++E +LNL ATELRLGLPG S + Q   P + +   +SNKR+ P  +   S  +  INSD
Sbjct: 3   SYETELNLRATELRLGLPG-SDEPQEKRPCSGSVVRSSNKRSSP--ELEESRCKSNINSD 62

Query: 62  ------TSKCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEE-TAAGMFIKVSMDGAPF 121
                 TS  ++++  P K QVVGWPP+RSFRKNSLQ KK E+    GM++KVSM GAP+
Sbjct: 63  SSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPY 122

Query: 122 LRKVDLKIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPW 181
           LRK+DLK+Y+ YP+LL+AL+N+FK + G++ EREGYNGSE+ PTYEDKDGDWMLVGDVPW
Sbjct: 123 LRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 182

Query: 182 EMFMSSCKKLRIMKGSEAKGLGC 195
            MF+SSCK+LRI+KGSEAKGLGC
Sbjct: 183 NMFVSSCKRLRIIKGSEAKGLGC 202

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 238.8 bits (608), Expect = 5.2e-62
Identity = 118/195 (60.51%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 3   FEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKC 62
           +++ +NL+ATELRLGLPGT         ++   SNKR LP   +   ES       T K 
Sbjct: 7   YDELVNLKATELRLGLPGT------EETVSCGKSNKRVLPEATEKEIES-------TGK- 66

Query: 63  SQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQG 122
             E   P KAQ+VGWPPVRS+RKN++Q KK E    G ++KVSMDGAP+LRK+DL +Y+ 
Sbjct: 67  -TETASPPKAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQ 126

Query: 123 YPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR 182
           YP+L+++LENMFKFS+G++ EREGY GS+FVPTYEDKDGDWMLVGDVPWEMF+SSCK+LR
Sbjct: 127 YPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLR 186

Query: 183 IMKGSEAKGLGCGSV 198
           IMKGSE KGLGCG +
Sbjct: 187 IMKGSEVKGLGCGGL 186

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.8e-61
Identity = 116/192 (60.42%), Postives = 151/192 (78.65%), Query Frame = 0


Query: 7   LNLEATELRLGLPGTSPDDQSNSPIN-RTNSNKRALPSDDQNSSESRREINSDTSKCSQE 66
           +NL+ TELRLGLPGT    ++   ++   N+NKR L      S+++ +EI S + K   E
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVL------STDTEKEIESSSRK--TE 64

Query: 67  NTPPTKAQVVGWPPVRSFRKNSLQAKK--KEETAAGMFIKVSMDGAPFLRKVDLKIYQGY 126
            +PP KAQ+VGWPPVRS+RKN++Q+KK   E    G+++KVSMDGAP+LRK+DL  Y+GY
Sbjct: 65  TSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGY 124

Query: 127 PDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRI 186
            +LL+ALE MFKFS+G++ ER+GY GS+FVPTYEDKDGDWML+GDVPWEMF+ +CK+LRI
Sbjct: 125 SELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRI 184

Query: 187 MKGSEAKGLGCG 196
           MKGSEAKGLGCG
Sbjct: 185 MKGSEAKGLGCG 188

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy Swiss-Prot
Match: P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.7e-60
Identity = 112/194 (57.73%), Postives = 143/194 (73.71%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           + FE DLNL+ATELRLGLPGT   + +N   +    N +    +    S S  + +    
Sbjct: 5   VVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHHQQ 64

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY 120
                + PP KA++VGWPP+RS+RKNS+Q    E    G+F+KVSMDGAP+LRKVDLK+Y
Sbjct: 65  HVETVSAPPPKAKIVGWPPIRSYRKNSVQ----EGEGDGIFVKVSMDGAPYLRKVDLKVY 124

Query: 121 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180
            GYP+LL+ALE MFK ++G++ EREGY GSE+ PTYEDKDGDWMLVGDVPW+MF++SCK+
Sbjct: 125 GGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKR 184

Query: 181 LRIMKGSEAKGLGC 195
           LRIMKGSEA+GLGC
Sbjct: 185 LRIMKGSEARGLGC 194

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy TrEMBL
Match: A0A0A0LID4 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G011420 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.1e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY 120
           KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY
Sbjct: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY 120

Query: 121 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180
           QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK
Sbjct: 121 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180

Query: 181 LRIMKGSEAKGLGCGSV 198
           LRIMKGSEAKGLGCGSV
Sbjct: 181 LRIMKGSEAKGLGCGSV 197

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy TrEMBL
Match: A0A5A7V9G4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001460 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.3e-103
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQN  ESRREINSD S
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEE-TAAGMFIKVSMDGAPFLRKVDLKI 120
           KC+QENTPPTKAQVVGWPPVRSFRKN LQAKKKEE  AAGMFIKVSMDGAPFLRKVDLKI
Sbjct: 61  KCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAAGMFIKVSMDGAPFLRKVDLKI 120

Query: 121 YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180
           YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK
Sbjct: 121 YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180

Query: 181 KLRIMKGSEAKGLGCGSV 198
           KLRIMKGSEAKGLGCGSV
Sbjct: 181 KLRIMKGSEAKGLGCGSV 198

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy TrEMBL
Match: A0A1S3C3E2 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.3e-103
Identity = 191/198 (96.46%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQN  ESRREINSD S
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEE-TAAGMFIKVSMDGAPFLRKVDLKI 120
           KC+QENTPPTKAQVVGWPPVRSFRKN LQAKKKEE  AAGMFIKVSMDGAPFLRKVDLKI
Sbjct: 61  KCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAAGMFIKVSMDGAPFLRKVDLKI 120

Query: 121 YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180
           YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK
Sbjct: 121 YQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK 180

Query: 181 KLRIMKGSEAKGLGCGSV 198
           KLRIMKGSEAKGLGCGSV
Sbjct: 181 KLRIMKGSEAKGLGCGSV 198

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy TrEMBL
Match: Q9SSY1 (Auxin-responsive protein (Fragment) OS=Cucumis sativus OX=3659 GN=CsIAA3 PE=2 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.6e-93
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 12  TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK 71
           TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK
Sbjct: 1   TELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQENTPPTK 60

Query: 72  AQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALE 131
           AQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALE
Sbjct: 61  AQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQGYPDLLQALE 120

Query: 132 NMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIMK 186
           NMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCK+LRIMK
Sbjct: 121 NMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMK 174

[Close]

BLAST of CsaV3_2G004130.1 vs. ExPASy TrEMBL
Match: A0A6J1G4Q6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.2e-91
Identity = 175/201 (87.06%), Postives = 180/201 (89.55%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           MAF+KDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +
Sbjct: 1   MAFQKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDSNSDLT 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAA----GMFIKVSMDGAPFLRKVD 120
           K  QEN PPTKAQVVGWPPVRSFRKN  QAKKK+E AA    GMFIKVSMDGAPFLRKVD
Sbjct: 61  KSDQENPPPTKAQVVGWPPVRSFRKNCFQAKKKDEGAATAAGGMFIKVSMDGAPFLRKVD 120

Query: 121 LKIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMS 180
           LK YQGYP+LLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFM 
Sbjct: 121 LKTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMG 180

Query: 181 SCKKLRIMKGSEAKGLGCGSV 198
           SCKKLRIMKGSEAKGL CGSV
Sbjct: 181 SCKKLRIMKGSEAKGLSCGSV 200

[Close]

BLAST of CsaV3_2G004130.1 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-63
Identity = 118/195 (60.51%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 3   FEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKC 62
           +++ +NL+ATELRLGLPGT         ++   SNKR LP   +   ES       T K 
Sbjct: 7   YDELVNLKATELRLGLPGT------EETVSCGKSNKRVLPEATEKEIES-------TGK- 66

Query: 63  SQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIYQG 122
             E   P KAQ+VGWPPVRS+RKN++Q KK E    G ++KVSMDGAP+LRK+DL +Y+ 
Sbjct: 67  -TETASPPKAQIVGWPPVRSYRKNNVQTKKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQ 126

Query: 123 YPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLR 182
           YP+L+++LENMFKFS+G++ EREGY GS+FVPTYEDKDGDWMLVGDVPWEMF+SSCK+LR
Sbjct: 127 YPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLR 186

Query: 183 IMKGSEAKGLGCGSV 198
           IMKGSE KGLGCG +
Sbjct: 187 IMKGSEVKGLGCGGL 186

[Close]

BLAST of CsaV3_2G004130.1 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 234.6 bits (597), Expect = 7.0e-62
Identity = 116/192 (60.42%), Postives = 151/192 (78.65%), Query Frame = 0


Query: 7   LNLEATELRLGLPGTSPDDQSNSPIN-RTNSNKRALPSDDQNSSESRREINSDTSKCSQE 66
           +NL+ TELRLGLPGT    ++   ++   N+NKR L      S+++ +EI S + K   E
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVL------STDTEKEIESSSRK--TE 64

Query: 67  NTPPTKAQVVGWPPVRSFRKNSLQAKK--KEETAAGMFIKVSMDGAPFLRKVDLKIYQGY 126
            +PP KAQ+VGWPPVRS+RKN++Q+KK   E    G+++KVSMDGAP+LRK+DL  Y+GY
Sbjct: 65  TSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGY 124

Query: 127 PDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRI 186
            +LL+ALE MFKFS+G++ ER+GY GS+FVPTYEDKDGDWML+GDVPWEMF+ +CK+LRI
Sbjct: 125 SELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRI 184

Query: 187 MKGSEAKGLGCG 196
           MKGSEAKGLGCG
Sbjct: 185 MKGSEAKGLGCG 188

[Close]

BLAST of CsaV3_2G004130.1 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 208.4 bits (529), Expect = 5.4e-54
Identity = 109/194 (56.19%), Postives = 135/194 (69.59%), Query Frame = 0


Query: 1   MAFEK--DLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSD 60
           MA+EK  +LNL+ TEL LGLPG +   +    ++   SN + L        E+R E    
Sbjct: 1   MAYEKVNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRL------FEETRDE---- 60

Query: 61  TSKCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLK 120
                +E+TPPTK Q+VGWPPVRS RKN+             ++KVSMDGAP+LRK+DLK
Sbjct: 61  -----EESTPPTKTQIVGWPPVRSSRKNNNSVS---------YVKVSMDGAPYLRKIDLK 120

Query: 121 IYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSC 180
            Y+ YP+LL+ALENMFK  +G++CEREGY GS FVPTYEDKDGDWMLVGDVPW+MF SSC
Sbjct: 121 TYKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSC 170

Query: 181 KKLRIMKGSEAKGL 193
           K+LRIMKGS+A  L
Sbjct: 181 KRLRIMKGSDAPAL 170

[Close]

BLAST of CsaV3_2G004130.1 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-52
Identity = 103/189 (54.50%), Postives = 130/189 (68.78%), Query Frame = 0


Query: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60
           M     LNL+ TELRLGLPG   + Q      R+N+ ++                N+D++
Sbjct: 1   MEVTNGLNLKDTELRLGLPGAQEEQQLELSCVRSNNKRK----------------NNDST 60

Query: 61  KCSQENTPPTKAQVVGWPPVRSFRKNSLQAKKKEETAAGMFIKVSMDGAPFLRKVDLKIY 120
           +  +   PP K Q+VGWPPVRS RKN+             ++KVSMDGAP+LRK+DLK+Y
Sbjct: 61  E--ESAPPPAKTQIVGWPPVRSNRKNNNNKNVS-------YVKVSMDGAPYLRKIDLKMY 120

Query: 121 QGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKK 180
           + YP+LL+ALENMFKF++G++ EREGY GS FVPTYEDKDGDWMLVGDVPW+MF SSC+K
Sbjct: 121 KNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQK 164

Query: 181 LRIMKGSEA 190
           LRIMKGSEA
Sbjct: 181 LRIMKGSEA 164

[Close]

BLAST of CsaV3_2G004130.1 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-41
Identity = 103/227 (45.37%), Postives = 131/227 (57.71%), Query Frame = 0


Query: 7   LNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTSKCSQEN 66
           +N EATELRLGLPG    +       + N  +    + D   + S   ++S  SK   EN
Sbjct: 2   INFEATELRLGLPG---GNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDS-VSKVDLEN 61

Query: 67  ------TPPTKAQVVGWPPVRSFRKNSLQAKK-----------KEETAAG---------- 126
                  PP KAQVVGWPPVRSFRKN +  +K           K   ++G          
Sbjct: 62  MKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACAT 121

Query: 127 -MFIKVSMDGAPFLRKVDLKIYQGYPDLLQALENMF-KFSLGKFCER------------E 186
             ++KVSMDGAP+LRK+DLK+Y+ Y DL  AL  MF  F++G +  +            +
Sbjct: 122 VAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLID 181

Query: 187 GYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKKLRIMKGSEAKGL 193
             NGS++VPTYEDKDGDWMLVGDVPWEMF+ SCK++RIMKGSEA GL
Sbjct: 182 LLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGL 224

The following BLAST results are available for this feature:

BLAST of CsaV3_2G004130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139234.1	2.3e-107	100.00	auxin-responsive protein IAA4 [Cucumis sativus] >KGN60809.1 hypothetical protein...	[more]
XP_008455974.1	1.7e-102	96.46	PREDICTED: auxin-induced protein 22D-like [Cucumis melo] >KAA0063607.1 auxin-ind...	[more]
XP_038889147.1	7.4e-98	92.50	auxin-induced protein 22D-like [Benincasa hispida]	[more]
BAA85822.1	3.2e-93	99.43	Aux/IAA protein, partial [Cucumis sativus]	[more]
KAG6599309.1	3.9e-91	86.70	Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsaV3_2G004130.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24542	1.4e-62	62.37	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
O24543	5.2e-62	60.10	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]
P33077	5.2e-62	60.51	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]
Q38822	9.8e-61	60.42	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
P32294	3.7e-60	57.73	Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S...	[more]

BLAST of CsaV3_2G004130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LID4	1.1e-107	100.00	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G011420 PE=3 SV=1	[more]
A0A5A7V9G4	8.3e-103	96.46	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C3E2	8.3e-103	96.46	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1	[more]
Q9SSY1	1.6e-93	99.43	Auxin-responsive protein (Fragment) OS=Cucumis sativus OX=3659 GN=CsIAA3 PE=2 SV...	[more]
A0A6J1G4Q6	4.2e-91	87.06	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1	[more]

BLAST of CsaV3_2G004130.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43700.1	3.7e-63	60.51	AUX/IAA transcriptional regulator family protein	[more]
AT1G04240.1	7.0e-62	60.42	AUX/IAA transcriptional regulator family protein	[more]
AT3G23030.1	5.4e-54	56.19	indole-3-acetic acid inducible 2	[more]
AT4G14560.1	8.6e-52	54.50	indole-3-acetic acid inducible	[more]
AT3G04730.1	2.3e-41	45.37	indoleacetic acid-induced protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 93..197 e-value: 9.7E-44 score: 149.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..59
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 1..194
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 97..185
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 12..193 e-value: 1.3E-58 score: 198.8
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..194
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 99..186 score: 26.528988

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G004130	CsaV3_2G004130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G004130.1.exon1	CsaV3_2G004130.1.exon1	exon
CsaV3_2G004130.1.exon2	CsaV3_2G004130.1.exon2	exon
CsaV3_2G004130.1.exon3	CsaV3_2G004130.1.exon3	exon
CsaV3_2G004130.1.exon4	CsaV3_2G004130.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G004130.1.cds1	CsaV3_2G004130.1.cds1	CDS
CsaV3_2G004130.1.cds2	CsaV3_2G004130.1.cds2	CDS
CsaV3_2G004130.1.cds3	CsaV3_2G004130.1.cds3	CDS
CsaV3_2G004130.1.cds4	CsaV3_2G004130.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G004130.1	CsaV3_2G004130.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding