CsaV3_1G030320.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G030320.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 17094378 .. 17094581 (+)
Sequence length204
RNA-Seq ExpressionCsaV3_1G030320.1
SyntenyCsaV3_1G030320.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGATTATTCATTTTGCACAATTGACGACAAGTCGTTTCAACATTCAAGAAGTAATTTAAAAGAAAGGTTGAAGATTGCGGCCATTGGCCTCCCAGTCGACATCTTTTCAAAGAAGCGAAAAAACAGTCGACGGACCTCTTACTGCCACTCGCCCACGCCCACGCCCACGCCCAAGGCGGAGTCTCTTCACTTCGACTAA

mRNA sequence

ATGGTCGATTATTCATTTTGCACAATTGACGACAAGTCGTTTCAACATTCAAGAAGTAATTTAAAAGAAAGGTTGAAGATTGCGGCCATTGGCCTCCCAGTCGACATCTTTTCAAAGAAGCGAAAAAACAGTCGACGGACCTCTTACTGCCACTCGCCCACGCCCACGCCCACGCCCAAGGCGGAGTCTCTTCACTTCGACTAA

Coding sequence (CDS)

ATGGTCGATTATTCATTTTGCACAATTGACGACAAGTCGTTTCAACATTCAAGAAGTAATTTAAAAGAAAGGTTGAAGATTGCGGCCATTGGCCTCCCAGTCGACATCTTTTCAAAGAAGCGAAAAAACAGTCGACGGACCTCTTACTGCCACTCGCCCACGCCCACGCCCACGCCCAAGGCGGAGTCTCTTCACTTCGACTAA

Protein sequence

MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPKAESLHFD*
Homology
[Close]
BLAST of CsaV3_1G030320.1 vs. NCBI nr
Match: KAE8653109.1 (hypothetical protein Csa_020043 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPK 60
          MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPK
Sbjct: 1  MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPK 60

Query: 61 AESLHFD 68
          AESLHFD
Sbjct: 61 AESLHFD 67

The following BLAST results are available for this feature:
BLAST of CsaV3_1G030320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653109.11.7e-30100.00hypothetical protein Csa_020043 [Cucumis sativus][more]
BLAST of CsaV3_1G030320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G030320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..67

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G030320CsaV3_1G030320gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G030320.1.exon1CsaV3_1G030320.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G030320.1.cds1CsaV3_1G030320.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G030320.1CsaV3_1G030320.1-proteinpolypeptide