CsaV3_1G030320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G030320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1: 17094378 .. 17094581 (+)
RNA-Seq Expression	CsaV3_1G030320
Synteny	CsaV3_1G030320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGATTATTCATTTTGCACAATTGACGACAAGTCGTTTCAACATTCAAGAAGTAATTTAAAAGAAAGGTTGAAGATTGCGGCCATTGGCCTCCCAGTCGACATCTTTTCAAAGAAGCGAAAAAACAGTCGACGGACCTCTTACTGCCACTCGCCCACGCCCACGCCCACGCCCAAGGCGGAGTCTCTTCACTTCGACTAA

mRNA sequence

ATGGTCGATTATTCATTTTGCACAATTGACGACAAGTCGTTTCAACATTCAAGAAGTAATTTAAAAGAAAGGTTGAAGATTGCGGCCATTGGCCTCCCAGTCGACATCTTTTCAAAGAAGCGAAAAAACAGTCGACGGACCTCTTACTGCCACTCGCCCACGCCCACGCCCACGCCCAAGGCGGAGTCTCTTCACTTCGACTAA

Coding sequence (CDS)

ATGGTCGATTATTCATTTTGCACAATTGACGACAAGTCGTTTCAACATTCAAGAAGTAATTTAAAAGAAAGGTTGAAGATTGCGGCCATTGGCCTCCCAGTCGACATCTTTTCAAAGAAGCGAAAAAACAGTCGACGGACCTCTTACTGCCACTCGCCCACGCCCACGCCCACGCCCAAGGCGGAGTCTCTTCACTTCGACTAA

Protein sequence

MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPKAESLHFD*

Homology

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BLAST of CsaV3_1G030320 vs. NCBI nr
Match: KAE8653109.1 (hypothetical protein Csa_020043 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPK 60
          MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPK
Sbjct: 1  MVDYSFCTIDDKSFQHSRSNLKERLKIAAIGLPVDIFSKKRKNSRRTSYCHSPTPTPTPK 60

Query: 61 AESLHFD 68
          AESLHFD
Sbjct: 61 AESLHFD 67

The following BLAST results are available for this feature:

BLAST of CsaV3_1G030320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653109.1	1.7e-30	100.00	hypothetical protein Csa_020043 [Cucumis sativus]	[more]

BLAST of CsaV3_1G030320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G030320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G030320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G030320.1	CsaV3_1G030320.1	mRNA