CsGy6G036560.1 (mRNA) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTGTAAAACCCTAGGTTTTCCCTCCTCCACTCCCCCGCCCGCTTCATTTTTTCTTGCTGGAGTTCTTACTGAAGGAAGAAACCCTAGGTTGCATCTCAGTTTGGTGTTCCACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAGAGTGGGTACGCGTCTTCATCTTTGAAAGTCTTTAGCACTACCCCTCCAGCGTTCAATTTTTTTTTAGCTATCACTAATAAACTTGCGCATCACTGATAAGTATACTGATCTGCTTTGTTACGGGATTAAAAATTTATGAGTATTATATTTAGAATGGATCGCATTGTTTGGTATGTTTCCAACTTCCTGGAATCCCAATTTAGCTTTGGTGTCCGGTTGGTTGAGTTAGGGACTGCCTTTGAAGGTTTTGACTTTATGGAATTAAGGTTTTATTCTTAGGAATCTTCGGAATTAGTTTCACTGGCAAGGATAAGGTCATCTGGATTGATTTTTTTTGGTTACTTTATGGTTCTTTTGCTCGAGAAAATCTACAGGATCTTCTAAGAGAAATCTAGGTTTATCGATATTGTATTTATTTCGGTTTAAAACACTCCTGGTTCCGATACTCTCTCATTGAAGTAAAAAATTCAGTTCTAGAATTTGCAACAATTCGGTTTTTGAATTTTAGCTAGCCTGAAATGGTTTAGTTCTAGTGTTTCTATAATTTGTAATTGTTTTGTCCTTCTCATGAAAAATCTTATCAAGGGACAAGGGGAAGGAATGATGAGTATTTCTTAGTTATGTAACACATTTTGCAAATACACTTGGTCCCTAACAGTTTATCAATGTATATGCTAGGATACTTGCTAACAAGATTCAAGACCTGAAATATATTGAGAATTAAAGAAGAAACTACAAGATAATCCAAGTGTAAAGGAGCTTGGAACCTCCCTCTTGAGTGTTCTCATCCGAGCCCTAGATCACTCCAGAAAATAGTCTAACTTTCACTCACACATCCTCTTACTATTTATACAACATTATGTAACTAATTTCTAATGGTCACTCCTTAATACGAAGGTACTGATATTCTTATCAGTTATCTAGGTACCTAACAGTATATAAGTGAAAATTTCTATTACATTGTTACAAATGTTGAATTACATAGTAAATCGTTACAAGATTGAAGTATAGACTAAATAGTCACATGTTAAAATTTAGAGACCAGAAGTTATTATTTTATTTTTAATTATATAACTTACATAGCCACCTCATTGATCCTTCTTGCTGGGGCACCAATTTTTTTGGCATTGAGTAATAACACCTTGGGCTTTTATAGGATGGATATACGAGTAGTTTGTTCTATGTTGATGGTACCTTATGATGAATATGTCGAACTGTTAAGTGTTAACCAGTATGCTATATACAATGACTGCTGGAGGAATGTACTGATTTGTGTAGGTGGTTTTAAAACCAAACTGACTAATTTGAGAACACCCCTCCCCCCCCCCCCCCAAAGAAAAAGGAAAAGGGGCATGTGGTGGAGGAAATTTCCACCCAAAACACAGCTAATGTTACTCTGTAAGTTTAATGAAAAAATATAATATACTCTGCTAAAACATACGAAGTTTAATCTTACAAGTTACAGTATTTGAAATCTTAAAAGATATTGAAATACTTAGTTGGCTATGGCCGGAAGAAGTTATCATCATAATACTTTAGGATTGACCAACCTATAAGAAAATCTCTATCTTTTAAAATTTTAAATCGAACATTTTTCAGGGTTTGACTAAATGACTTAGTTTGCTAAGTTGTGATAATATTATATGATTTCTAAACAGAAATTTGTGTTAATTTGCTTTGTATTCGAGGGGTTTTTTTTTCAAGAGGATGTTTATTTCCCAACTTTCTAGTTCGTTGATAGCACTTGTTCTTGATAAGGTTTAGAAAAGTTGGGTAGTTAAAATTGGTCTCAATTGAGTCACTGACTCAGAAAATTAGCTATGATCTTAACTTCGGCCATCTTGTGCAATGTTATATGGTTTATTCAGATGTCACAAATTACTGTGTATTTCTTTCTTGTTGCTTTGATGGCACCTTCAAGTGTATGTCAAGATTGCTTGTTTATCCACTCTCTCTCTCTAACTACTCGGTTGGGAAAATATATGCCCCTCTTTACAAGATCTGGACGATTGATTGGTATATTGATGTGGTAAAGGCTGTTACGATCTTTAGTTTTTAATCTTTACATATTACAAATATCCAACCATTCTAGGATTCGAAATTTCTTTCCAATTATCAAACATCAATGTTATCTTGCAATCTTTCATTTCAGTAACTTGATAGTTATTTGTTGCAGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCACCATGTCTCTAGGTAGATTCACTTGCCCCTTTCACTTTTTTAATCTCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGTGTGTTCTTTTCATGAAACATATGTACTGAAGATTGGAGAAATATAAAAGGGTAGGAAGAAGCAAACCTCTTTCCATTTAGCATTAATGTGAAGTAATGCCATGTTCTGAGTGGCTCTTTGACTTTTCATAAGTATAAACGATCTGAATATTAATGGTGGTATGGTCAATTACCATGTATAAGAACCACACAATGCCCAACTTTGTGGAGGCATGTACCAACCAAGATCTAAGCTTTTAAAAGGCCAAGCTTTCAGAGATCTGGATAGTCCGCTGTTTTGTCACTGTCTTTGAACAAGACGGGATTCTTCTAGTGGACCATCTCTCTCTTGTCTGTATTACATTTTATGCTACTCTTGCTCGTGATCTGTTTAATGGAAATCTAAACCAAGTGTTATAACTTATAATGCAAACTATATTAATGAGAACAGTAACTATGCTGCAAAGTCTGGTTACCGTCCTTGACAAGGGGAAATCAAAAGTTCAGAGATTTTCCTTTTTTTATCAGATCGCGTG ATTTGTAAAACCCTAGGTTTTCCCTCCTCCACTCCCCCGCCCGCTTCATTTTTTCTTGCTGGAGTTCTTACTGAAGGAAGAAACCCTAGGTTGCATCTCAGTTTGGTGTTCCACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAGAGTGGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCACCATGTCTCTAGGTAGATTCACTTGCCCCTTTCACTTTTTTAATCTCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGTGTGTTCTTTTCATGAAACATATGTACTGAAGATTGGAGAAATATAAAAGGGTAGGAAGAAGCAAACCTCTTTCCATTTAGCATTAATGTGAAGTAATGCCATGTTCTGAGTGGCTCTTTGACTTTTCATAAGTATAAACGATCTGAATATTAATGGTGGTATGGTCAATTACCATGTATAAGAACCACACAATGCCCAACTTTGTGGAGGCATGTACCAACCAAGATCTAAGCTTTTAAAAGGCCAAGCTTTCAGAGATCTGGATAGTCCGCTGTTTTGTCACTGTCTTTGAACAAGACGGGATTCTTCTAGTGGACCATCTCTCTCTTGTCTGTATTACATTTTATGCTACTCTTGCTCGTGATCTGTTTAATGGAAATCTAAACCAAGTGTTATAACTTATAATGCAAACTATATTAATGAGAACAGTAACTATGCTGCAAAGTCTGGTTACCGTCCTTGACAAGGGGAAATCAAAAGTTCAGAGATTTTCCTTTTTTTATCAGATCGCGTG ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ* Homology
BLAST of CsGy6G036560.1 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2) HSP 1 Score: 185.7 bits (470), Expect = 7.5e-46 Identity = 138/258 (53.49%), Postives = 162/258 (62.79%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45 Identity = 137/258 (53.10%), Postives = 162/258 (62.79%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45 Identity = 136/258 (52.71%), Postives = 162/258 (62.79%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy Swiss-Prot
Match: Q58DW4 (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 3.7e-45 Identity = 137/258 (53.10%), Postives = 161/258 (62.40%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy Swiss-Prot
Match: P27048 (Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN=Snrpb PE=1 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 8.3e-45 Identity = 129/243 (53.09%), Postives = 153/243 (62.96%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. NCBI nr
Match: XP_004134546.1 (small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_003303 [Cucumis sativus]) HSP 1 Score: 524 bits (1350), Expect = 6.99e-187 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]) HSP 1 Score: 521 bits (1343), Expect = 8.15e-186 Identity = 282/284 (99.30%), Postives = 283/284 (99.65%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]) HSP 1 Score: 518 bits (1335), Expect = 1.26e-184 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]) HSP 1 Score: 518 bits (1333), Expect = 2.73e-184 Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 511 bits (1317), Expect = 7.48e-182 Identity = 277/284 (97.54%), Postives = 280/284 (98.59%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1) HSP 1 Score: 524 bits (1350), Expect = 3.38e-187 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1) HSP 1 Score: 521 bits (1343), Expect = 3.95e-186 Identity = 282/284 (99.30%), Postives = 283/284 (99.65%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1) HSP 1 Score: 518 bits (1335), Expect = 6.08e-185 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1) HSP 1 Score: 511 bits (1317), Expect = 3.62e-182 Identity = 277/284 (97.54%), Postives = 280/284 (98.59%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. ExPASy TrEMBL
Match: A0A6J1IQN3 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 GN=LOC111477902 PE=3 SV=1) HSP 1 Score: 505 bits (1301), Expect = 9.93e-180 Identity = 273/284 (96.13%), Postives = 279/284 (98.24%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B ) HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94 Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B ) HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94 Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B ) HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94 Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B ) HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94 Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0
BLAST of CsGy6G036560.1 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 314.7 bits (805), Expect = 7.6e-86 Identity = 202/284 (71.13%), Postives = 216/284 (76.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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