CsGy6G036560 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G036560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Small nuclear ribonucleoprotein-associated protein
Location	Gy14Chr6: 31990224 .. 31994326 (+)
RNA-Seq Expression	CsGy6G036560
Synteny	CsGy6G036560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTAAAACCCTAGGTTTTCCCTCCTCCACTCCCCCGCCCGCTTCATTTTTTCTTGCTGGAGTTCTTACTGAAGGAAGAAACCCTAGGTTGCATCTCAGTTTGGTGTTCCACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAGAGTGGGTACGCGTCTTCATCTTTGAAAGTCTTTAGCACTACCCCTCCAGCGTTCAATTTTTTTTTAGCTATCACTAATAAACTTGCGCATCACTGATAAGTATACTGATCTGCTTTGTTACGGGATTAAAAATTTATGAGTATTATATTTAGAATGGATCGCATTGTTTGGTATGTTTCCAACTTCCTGGAATCCCAATTTAGCTTTGGTGTCCGGTTGGTTGAGTTAGGGACTGCCTTTGAAGGTTTTGACTTTATGGAATTAAGGTTTTATTCTTAGGAATCTTCGGAATTAGTTTCACTGGCAAGGATAAGGTCATCTGGATTGATTTTTTTTGGTTACTTTATGGTTCTTTTGCTCGAGAAAATCTACAGGATCTTCTAAGAGAAATCTAGGTTTATCGATATTGTATTTATTTCGGTTTAAAACACTCCTGGTTCCGATACTCTCTCATTGAAGTAAAAAATTCAGTTCTAGAATTTGCAACAATTCGGTTTTTGAATTTTAGCTAGCCTGAAATGGTTTAGTTCTAGTGTTTCTATAATTTGTAATTGTTTTGTCCTTCTCATGAAAAATCTTATCAAGGGACAAGGGGAAGGAATGATGAGTATTTCTTAGTTATGTAACACATTTTGCAAATACACTTGGTCCCTAACAGTTTATCAATGTATATGCTAGGATACTTGCTAACAAGATTCAAGACCTGAAATATATTGAGAATTAAAGAAGAAACTACAAGATAATCCAAGTGTAAAGGAGCTTGGAACCTCCCTCTTGAGTGTTCTCATCCGAGCCCTAGATCACTCCAGAAAATAGTCTAACTTTCACTCACACATCCTCTTACTATTTATACAACATTATGTAACTAATTTCTAATGGTCACTCCTTAATACGAAGGTACTGATATTCTTATCAGTTATCTAGGTACCTAACAGTATATAAGTGAAAATTTCTATTACATTGTTACAAATGTTGAATTACATAGTAAATCGTTACAAGATTGAAGTATAGACTAAATAGTCACATGTTAAAATTTAGAGACCAGAAGTTATTATTTTATTTTTAATTATATAACTTACATAGCCACCTCATTGATCCTTCTTGCTGGGGCACCAATTTTTTTGGCATTGAGTAATAACACCTTGGGCTTTTATAGGATGGATATACGAGTAGTTTGTTCTATGTTGATGGTACCTTATGATGAATATGTCGAACTGTTAAGTGTTAACCAGTATGCTATATACAATGACTGCTGGAGGAATGTACTGATTTGTGTAGGTGGTTTTAAAACCAAACTGACTAATTTGAGAACACCCCTCCCCCCCCCCCCCCAAAGAAAAAGGAAAAGGGGCATGTGGTGGAGGAAATTTCCACCCAAAACACAGCTAATGTTACTCTGTAAGTTTAATGAAAAAATATAATATACTCTGCTAAAACATACGAAGTTTAATCTTACAAGTTACAGTATTTGAAATCTTAAAAGATATTGAAATACTTAGTTGGCTATGGCCGGAAGAAGTTATCATCATAATACTTTAGGATTGACCAACCTATAAGAAAATCTCTATCTTTTAAAATTTTAAATCGAACATTTTTCAGGGTTTGACTAAATGACTTAGTTTGCTAAGTTGTGATAATATTATATGATTTCTAAACAGAAATTTGTGTTAATTTGCTTTGTATTCGAGGGGTTTTTTTTTCAAGAGGATGTTTATTTCCCAACTTTCTAGTTCGTTGATAGCACTTGTTCTTGATAAGGTTTAGAAAAGTTGGGTAGTTAAAATTGGTCTCAATTGAGTCACTGACTCAGAAAATTAGCTATGATCTTAACTTCGGCCATCTTGTGCAATGTTATATGGTTTATTCAGATGTCACAAATTACTGTGTATTTCTTTCTTGTTGCTTTGATGGCACCTTCAAGTGTATGTCAAGATTGCTTGTTTATCCACTCTCTCTCTCTAACTACTCGGTTGGGAAAATATATGCCCCTCTTTACAAGATCTGGACGATTGATTGGTATATTGATGTGGTAAAGGCTGTTACGATCTTTAGTTTTTAATCTTTACATATTACAAATATCCAACCATTCTAGGATTCGAAATTTCTTTCCAATTATCAAACATCAATGTTATCTTGCAATCTTTCATTTCAGTAACTTGATAGTTATTTGTTGCAGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCACCATGTCTCTAGGTAGATTCACTTGCCCCTTTCACTTTTTTAATCTCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGTGTGTTCTTTTCATGAAACATATGTACTGAAGATTGGAGAAATATAAAAGGGTAGGAAGAAGCAAACCTCTTTCCATTTAGCATTAATGTGAAGTAATGCCATGTTCTGAGTGGCTCTTTGACTTTTCATAAGTATAAACGATCTGAATATTAATGGTGGTATGGTCAATTACCATGTATAAGAACCACACAATGCCCAACTTTGTGGAGGCATGTACCAACCAAGATCTAAGCTTTTAAAAGGCCAAGCTTTCAGAGATCTGGATAGTCCGCTGTTTTGTCACTGTCTTTGAACAAGACGGGATTCTTCTAGTGGACCATCTCTCTCTTGTCTGTATTACATTTTATGCTACTCTTGCTCGTGATCTGTTTAATGGAAATCTAAACCAAGTGTTATAACTTATAATGCAAACTATATTAATGAGAACAGTAACTATGCTGCAAAGTCTGGTTACCGTCCTTGACAAGGGGAAATCAAAAGTTCAGAGATTTTCCTTTTTTTATCAGATCGCGTG

mRNA sequence

ATTTGTAAAACCCTAGGTTTTCCCTCCTCCACTCCCCCGCCCGCTTCATTTTTTCTTGCTGGAGTTCTTACTGAAGGAAGAAACCCTAGGTTGCATCTCAGTTTGGTGTTCCACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAGAGTGGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCACCATGTCTCTAGGTAGATTCACTTGCCCCTTTCACTTTTTTAATCTCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGTGTGTTCTTTTCATGAAACATATGTACTGAAGATTGGAGAAATATAAAAGGGTAGGAAGAAGCAAACCTCTTTCCATTTAGCATTAATGTGAAGTAATGCCATGTTCTGAGTGGCTCTTTGACTTTTCATAAGTATAAACGATCTGAATATTAATGGTGGTATGGTCAATTACCATGTATAAGAACCACACAATGCCCAACTTTGTGGAGGCATGTACCAACCAAGATCTAAGCTTTTAAAAGGCCAAGCTTTCAGAGATCTGGATAGTCCGCTGTTTTGTCACTGTCTTTGAACAAGACGGGATTCTTCTAGTGGACCATCTCTCTCTTGTCTGTATTACATTTTATGCTACTCTTGCTCGTGATCTGTTTAATGGAAATCTAAACCAAGTGTTATAACTTATAATGCAAACTATATTAATGAGAACAGTAACTATGCTGCAAAGTCTGGTTACCGTCCTTGACAAGGGGAAATCAAAAGTTCAGAGATTTTCCTTTTTTTATCAGATCGCGTG

Coding sequence (CDS)

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG

Protein sequence

MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ*

Homology

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BLAST of CsGy6G036560 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 7.5e-46
Identity = 138/258 (53.49%), Postives = 162/258 (62.79%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPP 240
             PPP+GRG PPP    PPP   G RP   PP    G P     PMG PP G  MR    
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM---GIPPGRGTPMGMPPPG--MR---- 238

Query: 241 PPRPGMPAPPPRPGMPPP 255
           PP PGM  PPP PGM PP
Sbjct: 241 PPPPGMRGPPP-PGMRPP 238

[Close]

BLAST of CsGy6G036560 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45
Identity = 137/258 (53.10%), Postives = 162/258 (62.79%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPP 240
             PPP+GRG PPP    PPP   G RP   PP    G P     PMG PP G  MR    
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM---GIPPGRGTPMGMPPPG--MR---- 238

Query: 241 PPRPGMPAPPPRPGMPPP 255
           PP PGM  PPP PG+ PP
Sbjct: 241 PPPPGMRGPPP-PGLRPP 238

[Close]

BLAST of CsGy6G036560 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-45
Identity = 136/258 (52.71%), Postives = 162/258 (62.79%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPP 240
             PPP+GRG PPP    PPP   G RP   PP    G P     PMG PP G  MR    
Sbjct: 181 GPPPPMGRGRPPPGMMAPPP---GMRPPMGPP---TGMPPGRGAPMGIPPPG--MR---- 238

Query: 241 PPRPGMPAPPPRPGMPPP 255
           PP PGM  PPP PGM PP
Sbjct: 241 PPPPGMRGPPP-PGMRPP 238

[Close]

BLAST of CsGy6G036560 vs. ExPASy Swiss-Prot
Match: Q58DW4 (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-45
Identity = 137/258 (53.10%), Postives = 161/258 (62.40%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+      
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----A 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPP 240
             PPP+GRG PPP    PPP   G RP   PP    G P     PMG PP G  MR    
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM---GIPPGRGTPMGMPPPG--MR---- 238

Query: 241 PPRPGMPAPPPRPGMPPP 255
           PP PGM  PPP PGM PP
Sbjct: 241 PPPPGMRGPPP-PGMRPP 238

[Close]

BLAST of CsGy6G036560 vs. ExPASy Swiss-Prot
Match: P27048 (Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN=Snrpb PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.3e-45
Identity = 129/243 (53.09%), Postives = 153/243 (62.96%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QAPPPIGRGMPPP---VPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPP 240
             PPP+GRG PPP    PPP   G RP   PP    G P     PMG PP G  MR PPP
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM---GLPPGRGTPMGMPPPG--MRPPPP 228

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_004134546.1 (small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_003303 [Cucumis sativus])

HSP 1 Score: 524 bits (1350), Expect = 6.99e-187
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 521 bits (1343), Expect = 8.15e-186
Identity = 282/284 (99.30%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPIGRGMPPPVPPPQFS ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa])

HSP 1 Score: 518 bits (1335), Expect = 1.26e-184
Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 242
           PPIGRGMPPPVPPPQFS ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida])

HSP 1 Score: 518 bits (1333), Expect = 2.73e-184
Identity = 280/284 (98.59%), Postives = 282/284 (99.30%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPPVPPPQFS ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 511 bits (1317), Expect = 7.48e-182
Identity = 277/284 (97.54%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP PPPQFS ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 524 bits (1350), Expect = 3.38e-187
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 521 bits (1343), Expect = 3.95e-186
Identity = 282/284 (99.30%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPPIGRGMPPPVPPPQFS ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 6.08e-185
Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 0


Query: 3   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAP 182
           QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAP
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 242
           PPIGRGMPPPVPPPQFS ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of CsGy6G036560 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1)

HSP 1 Score: 511 bits (1317), Expect = 3.62e-182
Identity = 277/284 (97.54%), Postives = 280/284 (98.59%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP PPPQFS ARPGGAPPQPFP PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. ExPASy TrEMBL
Match: A0A6J1IQN3 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 GN=LOC111477902 PE=3 SV=1)

HSP 1 Score: 505 bits (1301), Expect = 9.93e-180
Identity = 273/284 (96.13%), Postives = 279/284 (98.24%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           +ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  DERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180

Query: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
           APPP+GRGMPPP PPPQFS ARPGGAPPQPF  PPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFQVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284
           GMPAPPPRPGMPPPPGGAVP+YGPPRPGMPPPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of CsGy6G036560 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94
Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPP 240
            GQ  PP+GRG PPP       G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPP
Sbjct: 181 GGQG-PPMGRGPPPPY------GMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPP 240

Query: 241 PPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of CsGy6G036560 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94
Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPP 240
            GQ  PP+GRG PPP       G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPP
Sbjct: 181 GGQG-PPMGRGPPPPY------GMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPP 240

Query: 241 PPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of CsGy6G036560 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94
Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPP 240
            GQ  PP+GRG PPP       G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPP
Sbjct: 181 GGQG-PPMGRGPPPPY------GMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPP 240

Query: 241 PPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of CsGy6G036560 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 342.0 bits (876), Expect = 4.5e-94
Identity = 217/285 (76.14%), Postives = 228/285 (80.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       PIIRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAP-------PIIRPPGQMLPPPPF 180

Query: 181 PGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPP 240
            GQ  PP+GRG PPP       G RP   PPQ F  P PPQ+ QRPM PPP G +MRGPP
Sbjct: 181 GGQG-PPMGRGPPPPY------GMRP---PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPP 240

Query: 241 PPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 281
           PPP      PPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 PPPHGMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of CsGy6G036560 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 314.7 bits (805), Expect = 7.6e-86
Identity = 202/284 (71.13%), Postives = 216/284 (76.06%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPG 180
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               IIRPPGQMP    
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMP---- 180

Query: 181 QAPPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFA--QRPMGPPPTGQVMRGPPPP 240
             PP  G+G PPP           G  PP P P PPQ+   QRPM  PP G +MRGPPPP
Sbjct: 181 PQPPFAGQGGPPP---------PYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPP 240

Query: 241 PRPGMPAPPP-RPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ 280
              GM  PPP RPGMPPP  G  P++ PP PGMPP PPN  NQQ
Sbjct: 241 --HGMQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHNQQ 253

The following BLAST results are available for this feature:

BLAST of CsGy6G036560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14678	7.5e-46	53.49	Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=...	[more]
Q9TU67	1.7e-45	53.10	Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=...	[more]
Q9N1Q0	1.7e-45	52.71	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
Q58DW4	3.7e-45	53.10	Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=S...	[more]
P27048	8.3e-45	53.09	Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus OX=10090 GN...	[more]

BLAST of CsGy6G036560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134546.1	6.99e-187	100.00	small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN4949...	[more]
XP_008439504.1	8.15e-186	99.30	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]
KAA0052454.1	1.26e-184	99.29	small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. ...	[more]
XP_038882444.1	2.73e-184	98.59	small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >...	[more]
XP_022925730.1	7.48e-182	97.54	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ...	[more]

BLAST of CsGy6G036560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA9	3.38e-187	100.00	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]
A0A1S3AZK2	3.95e-186	99.30	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7UAP6	6.08e-185	99.29	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa O...	[more]
A0A6J1EJ14	3.62e-182	97.54	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IQN3	9.93e-180	96.13	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CsGy6G036560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20440.1	4.5e-94	76.14	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.2	4.5e-94	76.14	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	4.5e-94	76.14	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.4	4.5e-94	76.14	small nuclear ribonucleoprotein associated protein B	[more]
AT5G44500.1	7.6e-86	71.13	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 7..84 e-value: 4.5E-22 score: 89.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..83 e-value: 7.8E-19 score: 67.1
None	No IPR available	GENE3D	2.30.30.100		coord: 1..93 e-value: 6.2E-33 score: 114.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..284
None	No IPR available	PANTHER	PTHR10701:SF14	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN	coord: 1..259
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 1..259
None	No IPR available	CDD	cd01717	Sm_B	coord: 5..85 e-value: 1.55429E-53 score: 166.958
IPR017131	Small ribonucleoprotein associated, SmB/SmN	PIRSF	PIRSF037187	SmB_SmN	coord: 1..251 e-value: 9.2E-82 score: 272.1 coord: 237..275 e-value: 4000.0 score: -13.3
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G036560.1	CsGy6G036560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding