Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA
mRNA sequence
ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA
Coding sequence (CDS)
ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA
Protein sequence
MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN*
Homology
BLAST of CsGy4G006310.1 vs. NCBI nr
Match:
XP_011653217.1 (uncharacterized protein LOC105435188 [Cucumis sativus])
HSP 1 Score: 265 bits (676), Expect = 7.92e-89
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV
Sbjct: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSLVAN 142
GDVASELMRIPPTRVRSSLVAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142
BLAST of CsGy4G006310.1 vs. NCBI nr
Match:
KAE8649206.1 (hypothetical protein Csa_015041 [Cucumis sativus])
HSP 1 Score: 243 bits (619), Expect = 2.98e-80
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query: 14 QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 73
QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI
Sbjct: 6 QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
Query: 74 IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 133
IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT
Sbjct: 66 IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
Query: 134 RVRSSLVAN 142
RVRSSLVAN
Sbjct: 126 RVRSSLVAN 134
BLAST of CsGy4G006310.1 vs. NCBI nr
Match:
XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])
HSP 1 Score: 236 bits (603), Expect = 1.00e-77
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKV
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAISTDREEEE ETEKKVVRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61 KKRVRFADTEPVIIAISTDREEEE--EETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSLVAN 142
GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140
BLAST of CsGy4G006310.1 vs. NCBI nr
Match:
XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])
HSP 1 Score: 203 bits (516), Expect = 1.69e-64
Identity = 115/142 (80.99%), Postives = 123/142 (86.62%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MISN I SLNKKLQAVEIS+RC+RTKKT YVYRD+L+KK SPP SSS PQ EIKKV
Sbjct: 1 MISNFILSLNKKLQAVEISNRCRRTKKTTYVYRDDLSKKKQSPPPSSSQPQ---PEIKKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAI TD+EE E ETEKKVVRITVKLTK+EANRMLSRCS+GGVLEF
Sbjct: 61 KKRVRFADTEPVIIAI-TDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSLVAN 142
GDVA ELMRIP TRV SS+VAN
Sbjct: 121 GDVACELMRIPATRVSSSMVAN 138
BLAST of CsGy4G006310.1 vs. NCBI nr
Match:
XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])
HSP 1 Score: 180 bits (456), Expect = 2.81e-55
Identity = 107/139 (76.98%), Postives = 116/139 (83.45%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MI NLISSLNKKLQAVEIS+RC+RTKKT VYR +++KK P S S Q +PE I+KV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKPE-IEKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAI DREE E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61 KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSL 139
GDVASELMRIP RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 134
BLAST of CsGy4G006310.1 vs. ExPASy TrEMBL
Match:
A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)
HSP 1 Score: 265 bits (676), Expect = 3.84e-89
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV
Sbjct: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSLVAN 142
GDVASELMRIPPTRVRSSLVAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142
BLAST of CsGy4G006310.1 vs. ExPASy TrEMBL
Match:
A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)
HSP 1 Score: 236 bits (603), Expect = 4.84e-78
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKV
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAISTDREEEE ETEKKVVRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61 KKRVRFADTEPVIIAISTDREEEE--EETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSLVAN 142
GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140
BLAST of CsGy4G006310.1 vs. ExPASy TrEMBL
Match:
A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)
HSP 1 Score: 236 bits (603), Expect = 4.84e-78
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKV
Sbjct: 1 MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAISTDREEEE ETEKKVVRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61 KKRVRFADTEPVIIAISTDREEEE--EETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSLVAN 142
GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140
BLAST of CsGy4G006310.1 vs. ExPASy TrEMBL
Match:
A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)
HSP 1 Score: 180 bits (456), Expect = 1.36e-55
Identity = 107/139 (76.98%), Postives = 116/139 (83.45%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MI NLISSLNKKLQAVEIS+RC+RTKKT VYR +++KK P S S Q +PE I+KV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKPE-IEKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAI DREE E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61 KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSL 139
GDVASELMRIP RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 134
BLAST of CsGy4G006310.1 vs. ExPASy TrEMBL
Match:
A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)
HSP 1 Score: 177 bits (449), Expect = 1.91e-54
Identity = 104/139 (74.82%), Postives = 112/139 (80.58%), Query Frame = 0
Query: 1 MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
MI NLISSLNKKLQAVEIS+RC+RTKKT VYR +++KK S P EI+KV
Sbjct: 1 MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
Query: 61 KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
KKRVRFADTEPVIIAI DREE E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61 KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
Query: 121 GDVASELMRIPPTRVRSSL 139
GDVASELMRIP RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 132
BLAST of CsGy4G006310.1 vs. TAIR 10
Match:
AT4G23880.1 (unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). )
HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 34 DNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELE-VETEKK 93
D KK + P Q + +I + KK V F D + + E+E L+ VE +++
Sbjct: 73 DEQNKKPLAKPRKVVRFQLENNKIFEPKKTVSFDDDHELKPKENPLEEKESLKMVEGKEE 132
Query: 94 VVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLV 141
VVR+ +K+TK EA R+LS+C N VL+ + ++ +P +++ ++V
Sbjct: 133 VVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAMV 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_011653217.1 | 7.92e-89 | 100.00 | uncharacterized protein LOC105435188 [Cucumis sativus] | [more] |
KAE8649206.1 | 2.98e-80 | 100.00 | hypothetical protein Csa_015041 [Cucumis sativus] | [more] |
XP_008451951.1 | 1.00e-77 | 91.55 | PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc... | [more] |
XP_038906331.1 | 1.69e-64 | 80.99 | uncharacterized protein LOC120092170 [Benincasa hispida] | [more] |
XP_022985430.1 | 2.81e-55 | 76.98 | uncharacterized protein LOC111483436 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KYE1 | 3.84e-89 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1 | [more] |
A0A5D3D246 | 4.84e-78 | 91.55 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3BS40 | 4.84e-78 | 91.55 | uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... | [more] |
A0A6J1JBA8 | 1.36e-55 | 76.98 | uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436... | [more] |
A0A6J1EU86 | 1.91e-54 | 74.82 | uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376... | [more] |
Match Name | E-value | Identity | Description | |
AT4G23880.1 | 1.1e-05 | 30.56 | unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bac... | [more] |