CsGy4G006310 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G006310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 4561985 .. 4562413 (-)
RNA-Seq Expression	CsGy4G006310
Synteny	CsGy4G006310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

mRNA sequence

ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

Coding sequence (CDS)

ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

Protein sequence

MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN*

Homology

[Close]

BLAST of CsGy4G006310 vs. NCBI nr
Match: XP_011653217.1 (uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 265 bits (676), Expect = 7.92e-89
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 142
           GDVASELMRIPPTRVRSSLVAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CsGy4G006310 vs. NCBI nr
Match: KAE8649206.1 (hypothetical protein Csa_015041 [Cucumis sativus])

HSP 1 Score: 243 bits (619), Expect = 2.98e-80
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 14  QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 73
           QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI
Sbjct: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65

Query: 74  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 133
           IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT
Sbjct: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125

Query: 134 RVRSSLVAN 142
           RVRSSLVAN
Sbjct: 126 RVRSSLVAN 134

[Close]

BLAST of CsGy4G006310 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (603), Expect = 1.00e-77
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAISTDREEEE   ETEKKVVRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEE--EETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 142
           GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G006310 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 203 bits (516), Expect = 1.69e-64
Identity = 115/142 (80.99%), Postives = 123/142 (86.62%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MISN I SLNKKLQAVEIS+RC+RTKKT YVYRD+L+KK  SPP SSS PQ    EIKKV
Sbjct: 1   MISNFILSLNKKLQAVEISNRCRRTKKTTYVYRDDLSKKKQSPPPSSSQPQ---PEIKKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAI TD+EE   E ETEKKVVRITVKLTK+EANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAI-TDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 142
           GDVA ELMRIP TRV SS+VAN
Sbjct: 121 GDVACELMRIPATRVSSSMVAN 138

[Close]

BLAST of CsGy4G006310 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 180 bits (456), Expect = 2.81e-55
Identity = 107/139 (76.98%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK    P S S  Q +PE I+KV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKPE-IEKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSL 139
           GDVASELMRIP  RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 134

[Close]

BLAST of CsGy4G006310 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 3.84e-89
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 142
           GDVASELMRIPPTRVRSSLVAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CsGy4G006310 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 4.84e-78
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAISTDREEEE   ETEKKVVRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEE--EETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 142
           GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G006310 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 4.84e-78
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAISTDREEEE   ETEKKVVRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEE--EETEKKVVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 142
           GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G006310 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.36e-55
Identity = 107/139 (76.98%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK    P S S  Q +PE I+KV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKPE-IEKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSL 139
           GDVASELMRIP  RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 134

[Close]

BLAST of CsGy4G006310 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 1.91e-54
Identity = 104/139 (74.82%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK      S   P     EI+KV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60

Query: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSL 139
           GDVASELMRIP  RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 132

[Close]

BLAST of CsGy4G006310 vs. TAIR 10
Match: AT4G23880.1 (unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 34  DNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELE-VETEKK 93
           D   KK  + P      Q +  +I + KK V F D   +    +   E+E L+ VE +++
Sbjct: 73  DEQNKKPLAKPRKVVRFQLENNKIFEPKKTVSFDDDHELKPKENPLEEKESLKMVEGKEE 132

Query: 94  VVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLV 141
           VVR+ +K+TK EA R+LS+C N  VL+   +  ++  +P  +++ ++V
Sbjct: 133 VVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAMV 180

The following BLAST results are available for this feature:

BLAST of CsGy4G006310 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G006310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653217.1	7.92e-89	100.00	uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
KAE8649206.1	2.98e-80	100.00	hypothetical protein Csa_015041 [Cucumis sativus]	[more]
XP_008451951.1	1.00e-77	91.55	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc...	[more]
XP_038906331.1	1.69e-64	80.99	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
XP_022985430.1	2.81e-55	76.98	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]

BLAST of CsGy4G006310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1	3.84e-89	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
A0A5D3D246	4.84e-78	91.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	4.84e-78	91.55	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A6J1JBA8	1.36e-55	76.98	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A6J1EU86	1.91e-54	74.82	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]

BLAST of CsGy4G006310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23880.1	1.1e-05	30.56	unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..61
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 1..140
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G006310.1	CsGy4G006310.1	mRNA