CsGy3G040900.2 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy3G040900.2
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr3: 38293995 .. 38294274 (-)
Sequence length245
RNA-Seq ExpressionCsGy3G040900.2
SyntenyCsGy3G040900.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGAGACAAATATAAGTACCTAATAATTATTACCTTGAGACAAAATCAAGGAATCAACGAAGAGAAGGAGAATCAAAAGCGGGAAAAGTTGAGTCGGAAGCAGGCGAAAGAGGAGAATCGTAAACTGAGAGTAGAAGATCGAGAGAAATCGGCGATCGGCGCCGCCAAAATGCCTCGGCGGACCGTTGGAGAAGCAGAGGAAGATGGAGATAAAGATGGAGAGGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGCAGTCAAAATGA

mRNA sequence

ATGCGAGAGACAAATATAAGAATCAACGAAGAGAAGGAGAATCAAAAGCGGGAAAAGTTGAGTCGGAAGCAGGCGAAAGAGGAGAATCGTAAACTGAGAGTAGAAGATCGAGAGAAATCGGCGATCGGCGCCGCCAAAATGCCTCGGCGGACCGTTGGAGAAGCAGAGGAAGATGGAGATAAAGATGGAGAGGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGCAGTCAAAATGA

Coding sequence (CDS)

ATGCGAGAGACAAATATAAGAATCAACGAAGAGAAGGAGAATCAAAAGCGGGAAAAGTTGAGTCGGAAGCAGGCGAAAGAGGAGAATCGTAAACTGAGAGTAGAAGATCGAGAGAAATCGGCGATCGGCGCCGCCAAAATGCCTCGGCGGACCGTTGGAGAAGCAGAGGAAGATGGAGATAAAGATGGAGAGGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGCAGTCAAAATGA

Protein sequence

MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGDKDGEAKERERERERESVCSQNX
Homology
[Close]
BLAST of CsGy3G040900.2 vs. NCBI nr
Match: KAE8651342.1 (hypothetical protein Csa_001649, partial [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 1.40e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60
          MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD
Sbjct: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60

Query: 61 KDGEAKERERERERESVCSQN 81
          KDGEAKERERERERESVCSQN
Sbjct: 61 KDGEAKERERERERESVCSQN 81

[Close]
BLAST of CsGy3G040900.2 vs. ExPASy TrEMBL
Match: A0A0A0LH51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872090 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.36e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60
          MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD
Sbjct: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60

Query: 61 KDGEAKERERERER 74
          KDGEAKERERERER
Sbjct: 61 KDGEAKERERERER 74

The following BLAST results are available for this feature:
BLAST of CsGy3G040900.2 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy3G040900.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651342.11.40e-40100.00hypothetical protein Csa_001649, partial [Cucumis sativus][more]
BLAST of CsGy3G040900.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH511.36e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872090 PE=4 SV=1[more]
BLAST of CsGy3G040900.2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G040900CsGy3G040900gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G040900.2.exon2CsGy3G040900.2.exon2exon
CsGy3G040900.2.exon1CsGy3G040900.2.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy3G040900.2cds.CsGy3G040900.2_2CDS
cds.CsGy3G040900.2cds.CsGy3G040900.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G040900.2CsGy3G040900.2-proteinpolypeptide