CsGy3G040900 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G040900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 38293995 .. 38294274 (-)
RNA-Seq Expression	CsGy3G040900
Synteny	CsGy3G040900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAGACAAATATAAGTACCTAATAATTATTACCTTGAGACAAAATCAAGGAATCAACGAAGAGAAGGAGAATCAAAAGCGGGAAAAGTTGAGTCGGAAGCAGGCGAAAGAGGAGAATCGTAAACTGAGAGTAGAAGATCGAGAGAAATCGGCGATCGGCGCCGCCAAAATGCCTCGGCGGACCGTTGGAGAAGCAGAGGAAGATGGAGATAAAGATGGAGAGGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGCAGTCAAAATGA

mRNA sequence

ATGCGAGAGACAAATATAAGAATCAACGAAGAGAAGGAGAATCAAAAGCGGGAAAAGTTGAGTCGGAAGCAGGCGAAAGAGGAGAATCGTAAACTGAGAGTAGAAGATCGAGAGAAATCGGCGATCGGCGCCGCCAAAATGCCTCGGCGGACCGTTGGAGAAGCAGAGGAAGATGGAGATAAAGATGGAGAGGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGCAGTCAAAATGA

Coding sequence (CDS)

ATGCGAGAGACAAATATAAGAATCAACGAAGAGAAGGAGAATCAAAAGCGGGAAAAGTTGAGTCGGAAGCAGGCGAAAGAGGAGAATCGTAAACTGAGAGTAGAAGATCGAGAGAAATCGGCGATCGGCGCCGCCAAAATGCCTCGGCGGACCGTTGGAGAAGCAGAGGAAGATGGAGATAAAGATGGAGAGGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGTGTGCAGTCAAAATGA

Protein sequence

MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGDKDGEAKERERERERESVCSQNX

Homology

[Close]

BLAST of CsGy3G040900 vs. NCBI nr
Match: KAE8651342.1 (hypothetical protein Csa_001649, partial [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 1.40e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60
          MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD
Sbjct: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60

Query: 61 KDGEAKERERERERESVCSQN 81
          KDGEAKERERERERESVCSQN
Sbjct: 61 KDGEAKERERERERESVCSQN 81

[Close]

BLAST of CsGy3G040900 vs. ExPASy TrEMBL
Match: A0A0A0LH51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872090 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.36e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60
          MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD
Sbjct: 1  MRETNIRINEEKENQKREKLSRKQAKEENRKLRVEDREKSAIGAAKMPRRTVGEAEEDGD 60

Query: 61 KDGEAKERERERER 74
          KDGEAKERERERER
Sbjct: 61 KDGEAKERERERER 74

The following BLAST results are available for this feature:

BLAST of CsGy3G040900 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G040900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651342.1	1.40e-40	100.00	hypothetical protein Csa_001649, partial [Cucumis sativus]	[more]

BLAST of CsGy3G040900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH51	1.36e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872090 PE=4 SV=1	[more]

BLAST of CsGy3G040900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G040900.2	CsGy3G040900.2	mRNA