CsGy3G009580.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G009580.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LOB domain-containing protein
Location	Gy14Chr3: 7702386 .. 7703329 (-)
Sequence length	696
RNA-Seq Expression	CsGy3G009580.2
Synteny	CsGy3G009580.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGTGAAAACAAACATTTGACTTCTGATTGTTGGTTGCCAAAAGGTTAAGCTTATGGAAATCCAAATGCTTCTTATGAAAACTGGCACAATTTTAAAAGACTAAACAATTATCAAATGGAGCCTTAATTGTGAACTTATTATCATATATCATCTACATATGAGAAACAGACTAGTACGGATTCGATGTTTAGTTTTCAATTTCAGTTTCACATAAATGCCAGAATTTGAGTGATATACATTTCTTTTTAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAA

mRNA sequence

ATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAA

Coding sequence (CDS)

ATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAA

Protein sequence

MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA*

Homology

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BLAST of CsGy3G009580.2 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-51
Identity = 111/200 (55.50%), Postives = 133/200 (66.50%), Query Frame = 0


Query: 7   GGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNV 66
           GG  + G G    G GGPCGACKFLRRKC+P CIFAPYFDSEQGS +FAAVHKVFGASNV
Sbjct: 20  GGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNV 79

Query: 67  SKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 126
           SK+LLHIP H+R DA +TICYEAQAR+R+P+ GCV+HIFALQQQ   LQ E+SYLQA+LA
Sbjct: 80  SKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

Query: 127 TSELP----RSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS-- 186
           + ELP    R  P  Q QP      P L +I  LP+     P+  DL+ + D     S  
Sbjct: 140 SLELPQPQTRPQPMPQPQPLFFTPPPPL-AITDLPASVSPLPSTYDLASIFDQTTSSSAW 199

Query: 187 ---QEKLQSPLESYQIGSNN 198
              Q +   P   Y + S++
Sbjct: 200 ATQQRRFIDPRHQYGVSSSS 218

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BLAST of CsGy3G009580.2 vs. ExPASy Swiss-Prot
Match: O81323 (LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-46
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           S G+ +   GGG    GGPCGACKFLRRKC+  CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 3   SSGNPSSSSGGG----GGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASN 62

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+L H+PEHKR DA ++IC+EAQAR+R+P+ GCVSHI +LQQQ   LQ E+SYLQA+L
Sbjct: 63  VSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHL 122

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLS----SIISLPSDCPSFPAESDLSLLLDPVEQVSQ 185
           AT ELP      Q QPP +    + S    SI  LP+  PS     DLS + +PV   + 
Sbjct: 123 ATLELP------QPQPPQVPVSSSGSLQALSITDLPTISPSV---YDLSSIFEPVMSSTW 178

Query: 186 EKLQSPLES 191
              Q P  S
Sbjct: 183 AMQQQPRPS 178

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BLAST of CsGy3G009580.2 vs. ExPASy Swiss-Prot
Match: O22132 (LOB domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=LBD19 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-39
Identity = 81/134 (60.45%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 11  TKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKML 70
           T    GG  G  GPCGACKFLRRKC+  C+FAPYFD+EQG+  FAAVHKVFGASN SKML
Sbjct: 3   TGNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKML 62

Query: 71  LHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLAT-SE 130
           L +P HKRLDA +T+CYEA AR+R+PV G V H+F+LQ Q   LQ E++++QA L+T   
Sbjct: 63  LRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQR 122

Query: 131 LPRSAPHLQAQPPA 144
            P  +P  Q QPP+
Sbjct: 123 FPLQSPQ-QMQPPS 135

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy Swiss-Prot
Match: O81322 (LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-37
Identity = 85/186 (45.70%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G GGPCGACKFLRRKC+ +C+FAPYFDS +G++HF AVHKVFGASN SK+L+ IP 
Sbjct: 3   GSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPA 62

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSE---LPR 135
            +RLDA +T+ YEA AR+R+PV GCV HIFALQ Q   LQ E++Y+Q  L+T +    P 
Sbjct: 63  SRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPN 122

Query: 136 SAPHLQAQPPALVKKPTLSSIIS---LPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLE 195
           S  + + +  +    P +SS+ S   + S     P  S         ++  +E ++ P E
Sbjct: 123 SQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQ-----QQEQEQPKEAIEVPTE 182

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.8e-37
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G+G PCGACKFLRRKC  +CIFAPYF SEQG+  FAA+HKVFGASNVSK+LL++P 
Sbjct: 7   GTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPI 66

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 127
           H R +A +TI YEAQAR+ +PV GCVSHIFALQQQ A LQ ++  ++A +A
Sbjct: 67  HDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

[Close]

BLAST of CsGy3G009580.2 vs. NCBI nr
Match: XP_004134346.1 (LOB domain-containing protein 18 [Cucumis sativus] >KGN56593.1 hypothetical protein Csa_009651 [Cucumis sativus])

HSP 1 Score: 452 bits (1164), Expect = 2.67e-160
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV
Sbjct: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS
Sbjct: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
           QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]

BLAST of CsGy3G009580.2 vs. NCBI nr
Match: XP_008438149.1 (PREDICTED: LOB domain-containing protein 18 [Cucumis melo] >KAA0049032.1 LOB domain-containing protein 18 [Cucumis melo var. makuwa] >TYK17532.1 LOB domain-containing protein 18 [Cucumis melo var. makuwa])

HSP 1 Score: 435 bits (1119), Expect = 1.93e-153
Identity = 220/231 (95.24%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRS GSCTKGKGGGSNGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHKV
Sbjct: 1   MSSRRSSGSCTKGKGGGSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCV+HIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQ YLATSELPR APHLQAQPPALVKKPTLSSI+SLPSDCPSFPAESDLSLLLDPVEQ S
Sbjct: 121 LQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFPAESDLSLLLDPVEQAS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
           QEKLQSPLESYQIGSNNFPSM SIDQQVVQKQLSSMQRIGASLFPN+PKR+
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPKRS 231

[Close]

BLAST of CsGy3G009580.2 vs. NCBI nr
Match: XP_038903049.1 (LOB domain-containing protein 18-like [Benincasa hispida])

HSP 1 Score: 406 bits (1043), Expect = 7.42e-142
Identity = 206/231 (89.18%), Postives = 215/231 (93.07%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MS R SGGSCT+ KGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSE G+THFAAVHKV
Sbjct: 1   MSLRCSGGSCTESKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEHGTTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKML HIPEHKRLDAAITICYEAQAR+REPV GCV+HIFALQQQAARLQ+EISY
Sbjct: 61  FGASNVSKMLQHIPEHKRLDAAITICYEAQARIREPVFGCVAHIFALQQQAARLQVEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQAYLATSELPR APHLQAQ PALVKKPTLSSI++LPSDCP FPAESDLS LLDPVEQ S
Sbjct: 121 LQAYLATSELPRPAPHLQAQLPALVKKPTLSSIVNLPSDCPPFPAESDLSPLLDPVEQAS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
           + KLQSPLE YQIGSNNFPSMGSIDQQVVQKQ SSMQ I ASLFPN+PKRA
Sbjct: 181 RPKLQSPLELYQIGSNNFPSMGSIDQQVVQKQPSSMQCIDASLFPNVPKRA 231

[Close]

BLAST of CsGy3G009580.2 vs. NCBI nr
Match: XP_022924343.1 (LOB domain-containing protein 18-like [Cucurbita moschata])

HSP 1 Score: 370 bits (949), Expect = 1.61e-127
Identity = 193/233 (82.83%), Postives = 206/233 (88.41%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGS-NGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 60
           MSSR  GG C +G GG S NGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHK
Sbjct: 1   MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 60

Query: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 120
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+E+S
Sbjct: 61  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 120

Query: 121 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFP-AESDLSLLLDPVEQ 180
           YLQAYLA SEL R+APH QAQP  LVK PT+ SI++LP DCPS P A SDLSLLLDPVEQ
Sbjct: 121 YLQAYLAASELSRTAPHPQAQPQDLVK-PTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQ 180

Query: 181 VSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
            S  KLQSPLE  QI SNNFPSMGSIDQQ+VQKQLS+MQRIGASLFP +PKRA
Sbjct: 181 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKRA 232

[Close]

BLAST of CsGy3G009580.2 vs. NCBI nr
Match: KAG6582565.1 (LOB domain-containing protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370 bits (949), Expect = 1.61e-127
Identity = 193/233 (82.83%), Postives = 206/233 (88.41%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGS-NGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 60
           MSSR  GG C +G GG S NGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHK
Sbjct: 1   MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 60

Query: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 120
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+E+S
Sbjct: 61  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 120

Query: 121 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFP-AESDLSLLLDPVEQ 180
           YLQAYLA SEL R+APH QAQP  LVK PT+ SI++LP DCPS P A SDLSLLLDPVEQ
Sbjct: 121 YLQAYLAASELSRTAPHPQAQPQDLVK-PTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQ 180

Query: 181 VSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
            S  KLQSPLE  QI SNNFPSMGSIDQQ+VQKQLS+MQRIGASLFP +PKRA
Sbjct: 181 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSAMQRIGASLFPYVPKRA 232

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy TrEMBL
Match: A0A0A0L4D4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126090 PE=3 SV=1)

HSP 1 Score: 452 bits (1164), Expect = 1.29e-160
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV
Sbjct: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS
Sbjct: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
           QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy TrEMBL
Match: A0A5A7TZR4 (LOB domain-containing protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004010 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 9.36e-154
Identity = 220/231 (95.24%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRS GSCTKGKGGGSNGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHKV
Sbjct: 1   MSSRRSSGSCTKGKGGGSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCV+HIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQ YLATSELPR APHLQAQPPALVKKPTLSSI+SLPSDCPSFPAESDLSLLLDPVEQ S
Sbjct: 121 LQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFPAESDLSLLLDPVEQAS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
           QEKLQSPLESYQIGSNNFPSM SIDQQVVQKQLSSMQRIGASLFPN+PKR+
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPKRS 231

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy TrEMBL
Match: A0A1S3AVS3 (LOB domain-containing protein 18 OS=Cucumis melo OX=3656 GN=LOC103483345 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 9.36e-154
Identity = 220/231 (95.24%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKV 60
           MSSRRS GSCTKGKGGGSNGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHKV
Sbjct: 1   MSSRRSSGSCTKGKGGGSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKV 60

Query: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISY 120
           FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCV+HIFALQQQAARLQIEISY
Sbjct: 61  FGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEISY 120

Query: 121 LQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS 180
           LQ YLATSELPR APHLQAQPPALVKKPTLSSI+SLPSDCPSFPAESDLSLLLDPVEQ S
Sbjct: 121 LQGYLATSELPRPAPHLQAQPPALVKKPTLSSIVSLPSDCPSFPAESDLSLLLDPVEQAS 180

Query: 181 QEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
           QEKLQSPLESYQIGSNNFPSM SIDQQVVQKQLSSMQRIGASLFPN+PKR+
Sbjct: 181 QEKLQSPLESYQIGSNNFPSMVSIDQQVVQKQLSSMQRIGASLFPNVPKRS 231

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy TrEMBL
Match: A0A6J1EC58 (LOB domain-containing protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111431863 PE=3 SV=1)

HSP 1 Score: 370 bits (949), Expect = 7.80e-128
Identity = 193/233 (82.83%), Postives = 206/233 (88.41%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGS-NGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 60
           MSSR  GG C +G GG S NGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHK
Sbjct: 1   MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 60

Query: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 120
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+E+S
Sbjct: 61  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELS 120

Query: 121 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFP-AESDLSLLLDPVEQ 180
           YLQAYLA SEL R+APH QAQP  LVK PT+ SI++LP DCPS P A SDLSLLLDPVEQ
Sbjct: 121 YLQAYLAASELSRTAPHPQAQPQDLVK-PTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQ 180

Query: 181 VSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA 231
            S  KLQSPLE  QI SNNFPSMGSIDQQ+VQKQLS+MQRIGASLFP +PKRA
Sbjct: 181 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKRA 232

[Close]

BLAST of CsGy3G009580.2 vs. ExPASy TrEMBL
Match: A0A6J1IR96 (LOB domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111479774 PE=3 SV=1)

HSP 1 Score: 362 bits (929), Expect = 8.08e-125
Identity = 189/231 (81.82%), Postives = 203/231 (87.88%), Query Frame = 0


Query: 1   MSSRRSGGSCTKGKGGGS-NGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHK 60
           MSSR  GG C +G GG S NGSGGPCGACKFLRRKC PECIFAPYFDSEQG+THFAAVHK
Sbjct: 1   MSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHK 60

Query: 61  VFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEIS 120
           VFGASNVSK+LLHIPEHKRLDAAITICYEAQARVREPV GCV+HIFALQQQAARLQ+++S
Sbjct: 61  VFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVQLS 120

Query: 121 YLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAE-SDLSLLLDPVEQ 180
           YLQAYLA SEL R+APH QAQP  LVK  T+ SI++LP DCPS PA  SDLSLLLDPVEQ
Sbjct: 121 YLQAYLAASELSRTAPHPQAQPQDLVKL-TIPSIVNLPLDCPSLPAAASDLSLLLDPVEQ 180

Query: 181 VSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPK 229
            S  KLQSPLE  QI SNNFPSMGSIDQQ+VQKQLS+MQRIGASLFP +PK
Sbjct: 181 ASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPK 230

[Close]

BLAST of CsGy3G009580.2 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 111/200 (55.50%), Postives = 133/200 (66.50%), Query Frame = 0


Query: 7   GGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNV 66
           GG  + G G    G GGPCGACKFLRRKC+P CIFAPYFDSEQGS +FAAVHKVFGASNV
Sbjct: 20  GGGSSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNV 79

Query: 67  SKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 126
           SK+LLHIP H+R DA +TICYEAQAR+R+P+ GCV+HIFALQQQ   LQ E+SYLQA+LA
Sbjct: 80  SKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

Query: 127 TSELP----RSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVS-- 186
           + ELP    R  P  Q QP      P L +I  LP+     P+  DL+ + D     S  
Sbjct: 140 SLELPQPQTRPQPMPQPQPLFFTPPPPL-AITDLPASVSPLPSTYDLASIFDQTTSSSAW 199

Query: 187 ---QEKLQSPLESYQIGSNN 198
              Q +   P   Y + S++
Sbjct: 200 ATQQRRFIDPRHQYGVSSSS 218

[Close]

BLAST of CsGy3G009580.2 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-47
Identity = 108/189 (57.14%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 6   SGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASN 65
           S G+ +   GGG    GGPCGACKFLRRKC+  CIFAPYFDSEQG+ HFAAVHKVFGASN
Sbjct: 3   SSGNPSSSSGGG----GGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASN 62

Query: 66  VSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYL 125
           VSK+L H+PEHKR DA ++IC+EAQAR+R+P+ GCVSHI +LQQQ   LQ E+SYLQA+L
Sbjct: 63  VSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHL 122

Query: 126 ATSELPRSAPHLQAQPPALVKKPTLS----SIISLPSDCPSFPAESDLSLLLDPVEQVSQ 185
           AT ELP      Q QPP +    + S    SI  LP+  PS     DLS + +PV   + 
Sbjct: 123 ATLELP------QPQPPQVPVSSSGSLQALSITDLPTISPSV---YDLSSIFEPVMSSTW 178

Query: 186 EKLQSPLES 191
              Q P  S
Sbjct: 183 AMQQQPRPS 178

[Close]

BLAST of CsGy3G009580.2 vs. TAIR 10
Match: AT2G45410.1 (LOB domain-containing protein 19 )

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-40
Identity = 81/134 (60.45%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 11  TKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKML 70
           T    GG  G  GPCGACKFLRRKC+  C+FAPYFD+EQG+  FAAVHKVFGASN SKML
Sbjct: 3   TGNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKML 62

Query: 71  LHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLAT-SE 130
           L +P HKRLDA +T+CYEA AR+R+PV G V H+F+LQ Q   LQ E++++QA L+T   
Sbjct: 63  LRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQR 122

Query: 131 LPRSAPHLQAQPPA 144
            P  +P  Q QPP+
Sbjct: 123 FPLQSPQ-QMQPPS 135

[Close]

BLAST of CsGy3G009580.2 vs. TAIR 10
Match: AT4G00210.1 (LOB domain-containing protein 31 )

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-38
Identity = 85/186 (45.70%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G GGPCGACKFLRRKC+ +C+FAPYFDS +G++HF AVHKVFGASN SK+L+ IP 
Sbjct: 3   GSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPA 62

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSE---LPR 135
            +RLDA +T+ YEA AR+R+PV GCV HIFALQ Q   LQ E++Y+Q  L+T +    P 
Sbjct: 63  SRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQGLPPPN 122

Query: 136 SAPHLQAQPPALVKKPTLSSIIS---LPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLE 195
           S  + + +  +    P +SS+ S   + S     P  S         ++  +E ++ P E
Sbjct: 123 SQNNSRTEAASSSNVPLISSVDSKDNMSSSSSHIPCMSQ-----QQEQEQPKEAIEVPTE 182

[Close]

BLAST of CsGy3G009580.2 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 155.6 bits (392), Expect = 4.8e-38
Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 16  GGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPE 75
           G + G+G PCGACKFLRRKC  +CIFAPYF SEQG+  FAA+HKVFGASNVSK+LL++P 
Sbjct: 7   GTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPI 66

Query: 76  HKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLA 127
           H R +A +TI YEAQAR+ +PV GCVSHIFALQQQ A LQ ++  ++A +A
Sbjct: 67  HDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIA 117

The following BLAST results are available for this feature:

BLAST of CsGy3G009580.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22131	2.2e-51	55.50	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
O81323	1.6e-46	57.14	LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 S...	[more]
O22132	1.5e-39	60.45	LOB domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=LBD19 PE=2 S...	[more]
O81322	1.8e-37	45.70	LOB domain-containing protein 31 OS=Arabidopsis thaliana OX=3702 GN=LBD31 PE=2 S...	[more]
Q9SLB7	6.8e-37	65.77	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]

BLAST of CsGy3G009580.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134346.1	2.67e-160	100.00	LOB domain-containing protein 18 [Cucumis sativus] >KGN56593.1 hypothetical prot...	[more]
XP_008438149.1	1.93e-153	95.24	PREDICTED: LOB domain-containing protein 18 [Cucumis melo] >KAA0049032.1 LOB dom...	[more]
XP_038903049.1	7.42e-142	89.18	LOB domain-containing protein 18-like [Benincasa hispida]	[more]
XP_022924343.1	1.61e-127	82.83	LOB domain-containing protein 18-like [Cucurbita moschata]	[more]
KAG6582565.1	1.61e-127	82.83	LOB domain-containing protein 18, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CsGy3G009580.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D4	1.29e-160	100.00	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126090 PE=3 SV...	[more]
A0A5A7TZR4	9.36e-154	95.24	LOB domain-containing protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3AVS3	9.36e-154	95.24	LOB domain-containing protein 18 OS=Cucumis melo OX=3656 GN=LOC103483345 PE=3 SV...	[more]
A0A6J1EC58	7.80e-128	82.83	LOB domain-containing protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111431...	[more]
A0A6J1IR96	8.08e-125	81.82	LOB domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11147977...	[more]

BLAST of CsGy3G009580.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45420.1	1.5e-52	55.50	LOB domain-containing protein 18	[more]
AT4G00220.1	1.1e-47	57.14	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G45410.1	1.0e-40	60.45	LOB domain-containing protein 19	[more]
AT4G00210.1	1.3e-38	45.70	LOB domain-containing protein 31	[more]
AT2G42430.1	4.8e-38	65.77	lateral organ boundaries-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 24..122 e-value: 1.7E-36 score: 124.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 23..125 score: 22.847471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 1..213
None	No IPR available	PANTHER	PTHR31529:SF4	LOB DOMAIN-CONTAINING PROTEIN 18	coord: 1..213

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G009580	CsGy3G009580	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G009580.2.exon2	CsGy3G009580.2.exon2	exon
CsGy3G009580.2.exon1	CsGy3G009580.2.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy3G009580.2	cds.CsGy3G009580.2_2	CDS
cds.CsGy3G009580.2	cds.CsGy3G009580.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G009580.2	CsGy3G009580.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus