Cp4.1LG20g08700.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCTATTGTGGTCGACTCGTTCAATAATCTGTCCCCAAGAAGCCCTCTTTGTTTCTCGTCCGACGGAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGTAGCCAAGCTTCCTTGCTCCGATGAACTTTCAGACCTGATTCGATTTCCTTACCGATTTTTGGTGCGGTTTTATCTCACTTTCTTTCATTTTTGGTGGTTTAATTGCAGGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACGAGTCCATTTCAAAAAACTATCCACCAACTACTCAATCTCCGGTAAGCGTAAATTTCCTTTTCTGTATCTGTAATGATCAACCGTTCCTTGTTTGTGCTTGACCATTGCTTTGAGACAATTACGATGGCCCTGAATTGAAATATATGTGAAAATGTGGATCTATGAACATTTGGAGGAATGAAATTGTCTAATTTTTCTAAATTAGTTTTACTTTTATAAATGTCTGACAATAATATTGATCTAATTATGGGTTGATTTACATAATTTTTTATGTTTTACTTTGTATATCAACTAGTTTTATCTTTTTAAGTTGGAATATTGCTGAAATTTGTTGAAATTTTATCCAAACTTTGTATAAATGTCGACAATAACAGCCCAAACCCAGCTAGTACATATTGTCCTCTTTAGGCTTTTCGTTTCGAGCTTCCCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGATTTTCACCCTAAGGAATGTTTTGTTTCTTTCTCCAACCGATGTGGGATCTCACAATCCATCCCCTTGGGGGCCAGTATCCTCGCTGACACACCACCCGGTGTCTGGCTCTCATACCATTTCTAACAAGCCAAAAACCGGACCATGTACCAGCGAGGAGGCTGAGGCCTAAGGGGAGTGGACATGAGGTGGTGTGATAGTAAGGACGCTGGGCCTCGAAGGGGGATGGATTGGGGGGGTTCCACATCGATTGGAGAAGTGAACGAGTGCCTTCGAGGGCGCTAGTCCCGAAGGGGGGTGGATTGTGAGATCCTACATCGATTGGAAAGGAGAACGAAACATTCTTTATAAGAGTATGAAAACCTCTTCCTAGTAGACGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGAATAGCCCAAAGAGGACAATATCTACTAATGGTAGGATTGGGCTATTACAATAAATGTTGAATTCGTCGATGCAAGTTCTATCATCTCTGAATTTATACTTCCATCTAGCTGCTAATCCATTAATCTAATAGCATCCTCTTTGAAACTACTTTAGATGAGAAAACCTGTACTAGCAAAGAAATATGGTCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGATGGTGATGCATTGAGAATGGTTTCGTTAGCAATGTATTTAAACACCAATTCATAAAACATGTAAGGAAACAGAATTTTAAATTCTCTCTTTTTAACATTCTAGATTATCAAAGAATTGATGTTATGACTGTGGAACAAAGCCATGAGTATGAAGGCCTTTAAAGCAATAAAAACAAATTATCTTTATTGCTAAACTGTACTTTCGTTTTTCCCATGTATTTCTATGAGAAGCCATGTGTTTAAATTTGTGGACTGCCAGCTCTGAACCCATCCTTTAGTTATCTTCTCTCCCTCCCCCTCACCCCCTATGTAGTCTTGCATTTCTTTAGAATCTGTGTATTCAAAATGGAATATCTGCACGAGTAATTTACCAATGCGTTGCATATTTACATGATGCATCAAGATTGAAGAATTCTGATGCAATGAAAATGCAACCAGTTATACAATGCTAATGCTCATGACTTGATGGCCAATTACTACTGTATAATAAACATTTAAAGGAGATGGTTAACTAGCACCTCTGATTTGTTGCTATGATGAAACACAGTTTTGCAAAAAAGTATCTAACCTTCTTCAGTTTCGTCAAGAACAGAAATCTAATTTCTCAAACTTCCATTTCACACTGGCAACTATGAATTTGATACTAAAGCTGCTATTAATTACTAATATTTCTAGGTTGGAATTTTTGGATTTTAGGTTCTGCTATTTACTAGCCAACAAGAGCAGATTTTTTTTTACTTAATGTTGTTTGGCTAGTTGTTGGCTTAATTTGCTAGGCTATCTAAGATCATGTTATACATTATGTGTATGAAATAGGCCATCTATGCTAATGAACACCATGCATTCTTTGAAAAGCCCTCTGATTGGGTTGATGAGTATTTTTGCTAGAAGTTGGAAGGCTTTGGAAATGATACTATAAGATTGACCGAGGATTTATTTATTTATTTATTTATAATTTTTAAGTTTTTGTTTTGAAACATTTGTGTTTAAGCTAATTTCAGCAATATTCCAACTTAAAAAGAGTATTTACCTAATTACCCCTGATAAAATGTTACATTAGAGAAACTATATTATCGGTGTTCTGGGTATTTTGGTAATTTTGCTCAGCCCTATTGTGGTCGACTCGTTCAATAATCTGTCCCCAAGAAGCCCTCTTTGTTTCTCTTCCGACGGAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGTAGCCAAGCTTCCTTGCTCCGATGAACTTTCAGACCTGATTCGATTTCCTTACCGATTTTTGGTGCGGTTTAATNTCAGACCTGATTCGATTTCCTTACCGATTTTTGGTGCGGTTTTATCTCACTTTCTTTTCATTTTTGGTGGTTTAATTGCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACGAGTCCATTTCCAAAAACTATCCACCAACTACTCAATCTCCGGTAAGCGTAAATTTCCTTTTCTGTATCTGTAATGATCAACCGTTCCTTGTTTGTGTTTGACCATTGCTTTGAGACAATTACGATGGCCCTGAATTGAAATATATGTGAAAATGTGGATCTATGAACATTTGGAGGAATGAAATTGTCTAATTTTTCTAAATTAGTTTTACTTTTATAAATGTCTGACAATAATATTGATCTAATTATGGGTTGATTTACATAATTTTTTATGTTTTACTTTGTATATCAACTAGTTTTATCTTTTTAAGTTGGAATATTGCTGAAATTTGTTGAAATTTTATCCAAACTTTGTATAAATGTCGACAATAACAGCCCAAACCCAGCTAGTACATATTGTCCTCTTTAGGCTTTTCGTTTCGAGCTTCCCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGATTTTCACCCTAAGGAATGTTTTGTTTCTTTCTCCAACCGATGTGGGATCTCACAATCCATCCCCTTGGGGGCCAGTATCCTCGCTGACACACCACCCGGTGTCTGGCTCTCATACCATTTCTAACAAGCCAAAAACCGGACCATGTACCAGCGAGGAGGCTGAGGCCTAAGGGGAGTGGACATGAGGTGGTGTGATAGTAAGGACGCTGGGCCTCGAAGGGGGATGGATTGGGGGGGTTCCACATCGATTGGAGAAGTGAACGAGTGCCTTCGAGGGCGCTAGTCCCGAAGGGGGGTGGATTGTGAGATCCTACATCGATTGGAAAGGAGAACGAAACATTCTTTATAAGAGTATGAAAACCTCTTCCTAGTAGACGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGAATAGCCCAAAGAGGACAATATCTACTAATGGTAGGATTGGGCTATTACAATAAATGTTGAATTCGTCGATGCAAGTTCTATCATCTCTGAATTTATACTTCCATCTAGCTGCTAATCCATTAATCTAATAGCATCCTCTTTGAAACTACTTTAGATGAGAAAACCTGTACTAGCAAAGAAATATGGTCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGA CCTATTGTGGTCGACTCGTTCAATAATCTGTCCCCAAGAAGCCCTCTTTGTTTCTCGTCCGACGGAAATTCAGCCGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACGAGTCCATTTCAAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGTCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGATGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACGAGTCCATTTCCAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGTCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGA CCTATTGTGGTCGACTCGTTCAATAATCTGTCCCCAAGAAGCCCTCTTTGTTTCTCGTCCGACGGAAATTCAGCCGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACGAGTCCATTTCAAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGTCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGATGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTGGGGAGCGTGTTCGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACGAGTCCATTTCCAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAATATGGTCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGACCTGTGATTCAGGCTCTCAGTTCACGGGGA PIVVDSFNNLSPRSPLCFSSDGNSAERLLGAALGSVFAGVVVFEQRKSLYESISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGCREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSLYESISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRG Homology
BLAST of Cp4.1LG20g08700.1 vs. NCBI nr
Match: KAG7019216.1 (hypothetical protein SDJN02_18174, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 171 bits (434), Expect = 9.96e-52 Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. NCBI nr
Match: KAG6583307.1 (General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 171 bits (434), Expect = 9.87e-50 Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. NCBI nr
Match: XP_023519919.1 (uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 162 bits (411), Expect = 1.80e-48 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. NCBI nr
Match: XP_022970477.1 (uncharacterized protein LOC111469446 [Cucurbita maxima]) HSP 1 Score: 161 bits (408), Expect = 5.13e-48 Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. NCBI nr
Match: XP_022964845.1 (uncharacterized protein LOC111464826 [Cucurbita moschata]) HSP 1 Score: 160 bits (404), Expect = 2.08e-47 Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. ExPASy TrEMBL
Match: A0A6J1HZ79 (uncharacterized protein LOC111469446 OS=Cucurbita maxima OX=3661 GN=LOC111469446 PE=4 SV=1) HSP 1 Score: 161 bits (408), Expect = 2.48e-48 Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. ExPASy TrEMBL
Match: A0A6J1HLZ5 (uncharacterized protein LOC111464826 OS=Cucurbita moschata OX=3662 GN=LOC111464826 PE=4 SV=1) HSP 1 Score: 160 bits (404), Expect = 1.01e-47 Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. ExPASy TrEMBL
Match: A0A0A0LXB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495270 PE=4 SV=1) HSP 1 Score: 159 bits (403), Expect = 7.36e-47 Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. ExPASy TrEMBL
Match: A0A5D3BR76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00590 PE=4 SV=1) HSP 1 Score: 150 bits (380), Expect = 4.43e-44 Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. ExPASy TrEMBL
Match: A0A1S3C5P6 (uncharacterized protein LOC103497197 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497197 PE=4 SV=1) HSP 1 Score: 150 bits (380), Expect = 4.43e-44 Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0
BLAST of Cp4.1LG20g08700.1 vs. TAIR 10
Match: AT2G28430.1 (unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16 Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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