Cp4.1LG20g07460.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g07460.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG20: 6041841 .. 6044580 (-)
Sequence length	1530
RNA-Seq Expression	Cp4.1LG20g07460.1
Synteny	Cp4.1LG20g07460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTAGGCTCCTCTATGAGGATCCTTAAAAACCAGGCCAAATTCACCGTTGCAAATGGCAGATTACAGAGTTCCATACATCAAATCAAACAATTATTGCGTCCCCATGGCTTCTTCTATCACGAATCTCTTCCCGTCATCTCTCAACTCTCGCACCCACGTTATGCCCACCAACTGTTCGACGAAATTCCCCTTAAAGATATCTCACAATACAACCGTCTGCTCTTCGAGTATTCTCGCAACGATCATAATCGCGAAGCTTTGCATCTCTTTAAGGGCCTTCACTCGACGGGGTTGGCCGTTGATGGTTCAACTCTGTCATGTGTTTTGAAGGTCTGCGGAGTCTTGTTTGATCAAGTTGTGGGAAGACAGGTGCACTCTCAATCTTTGAAATCTGGGTTTTTAGAGAATGTCAGCGTTGGGACTGCTCTTGTTGATATGTACATGAAAACGGATGATTTTGAAGGTGGGAGAGAAATCTTCGATGAAATGGGTAACAAAAATGTTGTGTCATGGACTTCATTGCTGGCTGGATATGTACGCAATGGATTCAACGACTCAATCATTCATTTGATTAACCAAATGCAGATGGAGGGAGTAAAGCCAAACGACTTTACTTTTGCAACAATTCTTGGAGGTTTGGCTGATGAGAGTAAGATTGAGGTAGGAGTTCAAGTTCATGCCATGATAGTAAAAAATGGGTTTGAATTAAACACATCTGTATGCAATGCTTTGATATGTTTGTATCTAAAATCTGAGATGGTTGGAGATGCTGAACTTGTTTTTGATAGTATGTTTGCTAGAGATTCAGTCACTTGGAATGTTATGATTGCTGGCTATACATCCATTGGGTATGATTTAGAAGGCTTTGAACTGTTTCATCGGATGAGGCTTGCAGGTGTTAAGCTCAGCCAAACTCTATTTTGCACAATTCTAAAGCTATGCTCTCGCCTGAGGGAGCTGAATTTCACCACACAGCTGCATTGTTTGGTGGTGAAAAATGGCTATGAATTTGATCAGAACGTCAGGACAGCACTCATGGTCACTTACAGCAAGTGCAGCAAAGTGGATGAAGCTTTCAAGTTGTTCTCCATGGCGGATGGAGCTCATAATGTTGTCACCTGGACGGCCATGATTGGTGGGTTTGTGCAGAATAACAACAACAAGGAAGCGGTTGATTTGTTTTGTCAAATGAACAGGGAAGGTGTAAGGCCAAATCATTTCACATACTCCACAGTCCTTTCAGGTAAGCCTTCTTCATTACTTTGCCAATTACATGCACAAATCATTAAATCTGATTATGAGAAAGTACCTTCAGTAGCTACTGCACTTTTAGATGCATATATTAACGAGGGATATGTTGTTGAGAGTGCTCGGGTATTCGATTCGATTACTGTAAAGGATATTGTTGCATGGTCTGCCATGTTATCTGGTTTAGCTCAAATAGGAGATTCTGAAAAGGCAATGGAATTATTCAATCAATTAGTGAAAGAGGGAGTGAAACCCAATGAGTACTCATTTTCTAGTGTCATCAATGCATGTTCTTCACCAACAGCAACAGCAGAACATGGAAAACAAGTTCATGCAACTTCAATCAAATCAGGAAAGAGCAATGCTTTATGTGTAAGCAGTGCATTGGTCACAATGTACTCAAAAAGAGGTAATATTGAGAGTGCAAATAAGGTGTTCATCAGACAAGAAGAGAAAGATACAGTTTCATGGAATTCCATGATCACTGGCTATGCTCAACATGGTGATGCCAAGAAAGCTCTTGAAGTGTTTCAAGTTATGCAAAACAAAGGATTATCAATGGATGATGTAACATTCATTGGAGTACTTACTGCTTGTACTCATGCAGGATTAGTGCAAGAAGGCGAAAAATACTTCGATATTATGATTAACGATTGTCATATCGATCCAACAATTGATCATTATTCGTGTATGGTCGATCTATACAGCCGATCTGGAATGTTCGAAAAAGCCATGAACATCATGAATGGAATGCCATTCCTGGCTAGTCCAACAATGTGGCGGACTGTGCTAGCGGCGTGTCGTATTCACCGTAATTTAGAGCTCGGAAAACTCGCTGCAGAGAAGCTCATTTCACTTCAACCAAATGACTCGGCAGCATACGTCCTGTTATCGAACATCCATGCCGTGGCTGGGAATTGGCAAGAGAGAGCCAAAGTGAGGAAACTAATGGATGAGAGGAAGGTTAAAAAGGAAGCTGGGTGCAGCTGGATTGAGGTAAAGAACAGGATTTACTCATTCTTGGCTGGGGATGTTTCACATCCATTTTCTGATATTGTTTATGCAAAGCTTGAAGAACTGAGTATTAAACTGAAAGACATGGGGTATCAGGCGGATACGAATTATGTTCTTCATGATGTGGAGGAAGAACACAAAGAAGCCATTCTGGGTCAACACAGTGAGAGATTGGCTATTGCTTACGGATTGATTGCTCTGCCGCCTGGATCTCCGATTCAGATTGTAAAGAATCTAAGGATTTGTGGGGATTGTCACAACGTAATTGAGTTAATATCGTTGATTGAAGAGAGGGCTCTGATTGTGAGAGATTCAAGCCGCTTCCACCATTTCAAAGGGGGAGTTTGCTCTTGTGGAGGTTATTGGTAACCCTCGTTCTAAACATACAATATGATTTAGTTTATATTGCCGCCATTTTTTTTCTCCATATTTGTTTATCACTGTAATTCATTCTAGATTTTTAACTTGGTGA

mRNA sequence

ATGAGTTTAGGCTCCTCTATGAGGATCCTTAAAAACCAGGCCAAATTCACCGTTGCAAATGGCAGATTACAGAGTTCCATACATCAAATCAAACAATTATTGCGTCCCCATGGCTTCTTCTATCACGAATCTCTTCCCGTCATCTCTCAACTCTCGCACCCACGTTATGCCCACCAACTGTTCGACGAAATTCCCCTTAAAGATATCTCACAATACAACCGTCTGCTCTTCGAGTATTCTCGCAACGATCATAATCGCGAAGCTTTGCATCTCTTTAAGGGCCTTCACTCGACGGGGTTGGCCGTTGATGGTTCAACTCTGTCATGTGTTTTGAAGGTCTGCGGAGTCTTGTTTGATCAAGTTGTGGGAAGACAGGTGCACTCTCAATCTTTGAAATCTGGGTTTTTAGAGAATGTCAGCGTTGGGACTGCTCTTGTTGATATGTACATGAAAACGGATGATTTTGAAGGTGGGAGAGAAATCTTCGATGAAATGGGTAACAAAAATGTTGTGTCATGGACTTCATTGCTGGCTGGATATGTACGCAATGGATTCAACGACTCAATCATTCATTTGATTAACCAAATGCAGATGGAGGGAGTAAAGCCAAACGACTTTACTTTTGCAACAATTCTTGGAGGTTTGGCTGATGAGAGTAAGATTGAGGTAGGAGTTCAAGTTCATGCCATGATAGTAAAAAATGGGTTTGAATTAAACACATCTGTATGCAATGCTTTGATATGTTTGTATCTAAAATCTGAGATGGTTGGAGATGCTGAACTTGTTTTTGATAGTATGTTTGCTAGAGATTCAGTCACTTGGAATGTTATGATTGCTGGCTATACATCCATTGGGTATGATTTAGAAGGCTTTGAACTGTTTCATCGGATGAGGCTTGCAGGTGTTAAGCTCAGCCAAACTCTATTTTGCACAATTCTAAAGCTATGCTCTCGCCTGAGGGAGCTGAATTTCACCACACAGCTGCATTGTTTGGTGGTGAAAAATGGCTATGAATTTGATCAGAACGTCAGGACAGCACTCATGGTCACTTACAGCAAGTGCAGCAAAGTGGATGAAGCTTTCAAGTTGTTCTCCATGGCGGATGGAGCTCATAATGTTGTCACCTGGACGGCCATGATTGGTGGGTTTGTGCAGAATAACAACAACAAGGAAGCGGTTGATTTGTTTTGTCAAATGAACAGGGAAGGTGTAAGGCCAAATCATTTCACATACTCCACAGTCCTTTCAGGTAAGCCTTCTTCATTACTTTGCCAATTACATGCACAAATCATTAAATCTGATTATGAGAAAGTACCTTCAGTAGCTACTGCACTTTTAGATGCATATATTAACGAGGGATATGTTGTTGAGAGTGCTCGGGTATTCGATTCGATTACTGTAAAGGATATTGTTGCATGGTCTGCCATGTTATCTGGTTTAGCTCAAATAGGAGATTCTGAAAAGGCAATGGAATTATTCAATCAATTAGTGAAAGAGGGAGTGAAACCCAATGAATTTTTAACTTGGTGA

Coding sequence (CDS)

ATGAGTTTAGGCTCCTCTATGAGGATCCTTAAAAACCAGGCCAAATTCACCGTTGCAAATGGCAGATTACAGAGTTCCATACATCAAATCAAACAATTATTGCGTCCCCATGGCTTCTTCTATCACGAATCTCTTCCCGTCATCTCTCAACTCTCGCACCCACGTTATGCCCACCAACTGTTCGACGAAATTCCCCTTAAAGATATCTCACAATACAACCGTCTGCTCTTCGAGTATTCTCGCAACGATCATAATCGCGAAGCTTTGCATCTCTTTAAGGGCCTTCACTCGACGGGGTTGGCCGTTGATGGTTCAACTCTGTCATGTGTTTTGAAGGTCTGCGGAGTCTTGTTTGATCAAGTTGTGGGAAGACAGGTGCACTCTCAATCTTTGAAATCTGGGTTTTTAGAGAATGTCAGCGTTGGGACTGCTCTTGTTGATATGTACATGAAAACGGATGATTTTGAAGGTGGGAGAGAAATCTTCGATGAAATGGGTAACAAAAATGTTGTGTCATGGACTTCATTGCTGGCTGGATATGTACGCAATGGATTCAACGACTCAATCATTCATTTGATTAACCAAATGCAGATGGAGGGAGTAAAGCCAAACGACTTTACTTTTGCAACAATTCTTGGAGGTTTGGCTGATGAGAGTAAGATTGAGGTAGGAGTTCAAGTTCATGCCATGATAGTAAAAAATGGGTTTGAATTAAACACATCTGTATGCAATGCTTTGATATGTTTGTATCTAAAATCTGAGATGGTTGGAGATGCTGAACTTGTTTTTGATAGTATGTTTGCTAGAGATTCAGTCACTTGGAATGTTATGATTGCTGGCTATACATCCATTGGGTATGATTTAGAAGGCTTTGAACTGTTTCATCGGATGAGGCTTGCAGGTGTTAAGCTCAGCCAAACTCTATTTTGCACAATTCTAAAGCTATGCTCTCGCCTGAGGGAGCTGAATTTCACCACACAGCTGCATTGTTTGGTGGTGAAAAATGGCTATGAATTTGATCAGAACGTCAGGACAGCACTCATGGTCACTTACAGCAAGTGCAGCAAAGTGGATGAAGCTTTCAAGTTGTTCTCCATGGCGGATGGAGCTCATAATGTTGTCACCTGGACGGCCATGATTGGTGGGTTTGTGCAGAATAACAACAACAAGGAAGCGGTTGATTTGTTTTGTCAAATGAACAGGGAAGGTGTAAGGCCAAATCATTTCACATACTCCACAGTCCTTTCAGGTAAGCCTTCTTCATTACTTTGCCAATTACATGCACAAATCATTAAATCTGATTATGAGAAAGTACCTTCAGTAGCTACTGCACTTTTAGATGCATATATTAACGAGGGATATGTTGTTGAGAGTGCTCGGGTATTCGATTCGATTACTGTAAAGGATATTGTTGCATGGTCTGCCATGTTATCTGGTTTAGCTCAAATAGGAGATTCTGAAAAGGCAATGGAATTATTCAATCAATTAGTGAAAGAGGGAGTGAAACCCAATGAATTTTTAACTTGGTGA

Protein sequence

MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPSSLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPNEFLTW

Homology

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 3.6e-131
Identity = 233/450 (51.78%), Postives = 315/450 (70.00%), Query Frame = 0


Query: 57  AHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGV 116
           AH LFD+ P +D   Y  LLF +SR+   +EA  LF  +H  G+ +D S  S VLKV   
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 117 LFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSL 176
           L D++ GRQ+H Q +K GFL++VSVGT+LVD YMK  +F+ GR++FDEM  +NVV+WT+L
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 177 LAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGF 236
           ++GY RN  ND ++ L  +MQ EG +PN FTFA  LG LA+E     G+QVH ++VKNG 
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225

Query: 237 ELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHR 296
           +    V N+LI LYLK   V  A ++FD    +  VTWN MI+GY + G DLE   +F+ 
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285

Query: 297 MRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSK 356
           MRL  V+LS++ F +++KLC+ L+EL FT QLHC VVK G+ FDQN+RTALMV YSKC+ 
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345

Query: 357 VDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLS 416
           + +A +LF       NVV+WTAMI GF+QN+  +EAVDLF +M R+GVRPN FTYS +L+
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405

Query: 417 GKPSSLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAM 476
             P     ++HAQ++K++YE+  +V TALLDAY+  G V E+A+VF  I  KDIVAWSAM
Sbjct: 406 ALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465

Query: 477 LSGLAQIGDSEKAMELFNQLVKEGVKPNEF 507
           L+G AQ G++E A+++F +L K G+KPNEF
Sbjct: 466 LAGYAQTGETEAAIKMFGELTKGGIKPNEF 495

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 255.0 bits (650), Expect = 1.8e-66
Identity = 137/457 (29.98%), Postives = 239/457 (52.30%), Query Frame = 0


Query: 57  AHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGV 116
           A  +F  +  +D   YN L+   S+  +  +A+ LFK +H  GL  D +TL+ ++  C  
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401

Query: 117 LFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSL 176
                 G+Q+H+ + K GF  N  +  AL+++Y K  D E   + F E   +NVV W  +
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 177 LAGY-----VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMI 236
           L  Y     +RN F      +  QMQ+E + PN +T+ +IL        +E+G Q+H+ I
Sbjct: 462 LVAYGLLDDLRNSF-----RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 521

Query: 237 VKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGF 296
           +K  F+LN  VC+ LI +Y K   +  A  +      +D V+W  MIAGYT   +D +  
Sbjct: 522 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 581

Query: 297 ELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTY 356
             F +M   G++  +      +  C+ L+ L    Q+H     +G+  D   + AL+  Y
Sbjct: 582 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 641

Query: 357 SKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTY 416
           S+C K++E++  F   +   N + W A++ GF Q+ NN+EA+ +F +MNREG+  N+FT+
Sbjct: 642 SRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 701

Query: 417 STVLSGKPSSLLC----QLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITV 476
            + +     +       Q+HA I K+ Y+    V  AL+  Y   G + ++ + F  ++ 
Sbjct: 702 GSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVST 761

Query: 477 KDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPN 505
           K+ V+W+A+++  ++ G   +A++ F+Q++   V+PN
Sbjct: 762 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPN 792

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy Swiss-Prot
Match: Q9SS83 (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-66
Identity = 151/477 (31.66%), Postives = 251/477 (52.62%), Query Frame = 0


Query: 35  RPHGFFYHESLPVISQLSHPRYAHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKG 94
           RP    +   +    +L   + A  LF E+   D+  +N ++  + +      A+  F  
Sbjct: 258 RPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN 317

Query: 95  LHSTGLAVDGSTLSCVLKVCGVLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDD 154
           +  + +    STL  VL   G++ +  +G  VH++++K G   N+ VG++LV MY K + 
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377

Query: 155 FEGGREIFDEMGNKNVVSWTSLLAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGG 214
            E   ++F+ +  KN V W +++ GY  NG +  ++ L   M+  G   +DFTF ++L  
Sbjct: 378 MEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 215 LADESKIEVGVQVHAMIVKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTW 274
            A    +E+G Q H++I+K     N  V NAL+ +Y K   + DA  +F+ M  RD+VTW
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497

Query: 275 NVMIAGYTSIGYDLEGFELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVK 334
           N +I  Y     + E F+LF RM L G+        + LK C+ +  L    Q+HCL VK
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557

Query: 335 NGYEFDQNVRTALMVTYSKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVD 394
            G + D +  ++L+  YSKC  + +A K+FS      +VV+  A+I G+ Q NN +EAV 
Sbjct: 558 CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP-EWSVVSMNALIAGYSQ-NNLEEAVV 617

Query: 395 LFCQMNREGVRPNHFTYSTVLSG--KPSSLL--CQLHAQIIKSDYEKVPS-VATALLDAY 454
           LF +M   GV P+  T++T++    KP SL    Q H QI K  +      +  +LL  Y
Sbjct: 618 LFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMY 677

Query: 455 INEGYVVESARVFDSI-TVKDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPNE 506
           +N   + E+  +F  + + K IV W+ M+SG +Q G  E+A++ + ++  +GV P++
Sbjct: 678 MNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQ 732

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.9e-64
Identity = 147/458 (32.10%), Postives = 245/458 (53.49%), Query Frame = 0


Query: 57  AHQLFDEIPLKDISQYNRLLFEYSRN---DHNREALHLFKGLHSTGLAVDGSTLSCVLKV 116
           AH +F+ I  KD+  +N L+  YS+N     +   + LF+ + +  +  +  TL+ + K 
Sbjct: 68  AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127

Query: 117 CGVLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSW 176
              L    VGRQ H+  +K     ++ V T+LV MY K    E G ++F  M  +N  +W
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTW 187

Query: 177 TSLLAGYVRNGFNDSIIHLINQM--QMEGVKPNDFTFATILGGLADESKIEVGVQVHAMI 236
           +++++GY   G  +  I + N    + E    +D+ F  +L  LA    + +G Q+H + 
Sbjct: 188 STMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCIT 247

Query: 237 VKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGF 296
           +KNG     ++ NAL+ +Y K E + +A  +FDS   R+S+TW+ M+ GY+  G  LE  
Sbjct: 248 IKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAV 307

Query: 297 ELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTY 356
           +LF RM  AG+K S+     +L  CS +  L    QLH  ++K G+E      TAL+  Y
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 367

Query: 357 SKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTY 416
           +K   + +A K F       +V  WT++I G+VQN++N+EA+ L+ +M   G+ PN  T 
Sbjct: 368 AKAGCLADARKGFDCLQ-ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTM 427

Query: 417 STVLSGKPS----SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITV 476
           ++VL    S     L  Q+H   IK  +     + +AL   Y   G + +   VF     
Sbjct: 428 ASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPN 487

Query: 477 KDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPNE 506
           KD+V+W+AM+SGL+  G  ++A+ELF +++ EG++P++
Sbjct: 488 KDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDD 524

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy Swiss-Prot
Match: Q9SVA5 (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E52 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-63
Identity = 140/456 (30.70%), Postives = 241/456 (52.85%), Query Frame = 0


Query: 56  YAHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCG 115
           YA  +FD +P K    +  ++    +   +  +L LF  L    +  DG  LS VL  C 
Sbjct: 201 YARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACS 260

Query: 116 VLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTS 175
           +L     G+Q+H+  L+ G   + S+   L+D Y+K        ++F+ M NKN++SWT+
Sbjct: 261 ILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTT 320

Query: 176 LLAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNG 235
           LL+GY +N  +   + L   M   G+KP+ +  ++IL   A    +  G QVHA  +K  
Sbjct: 321 LLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKAN 380

Query: 236 FELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIG--YDL-EGFE 295
              ++ V N+LI +Y K + + DA  VFD   A D V +N MI GY+ +G  ++L E   
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALN 440

Query: 296 LFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYS 355
           +F  MR   ++ S   F ++L+  + L  L  + Q+H L+ K G   D    +AL+  YS
Sbjct: 441 IFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYS 500

Query: 356 KCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYS 415
            C  + ++  +F       ++V W +M  G+VQ + N+EA++LF ++     RP+ FT++
Sbjct: 501 NCYCLKDSRLVFDEMK-VKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFA 560

Query: 416 TVLSGKPSSLLCQL----HAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVK 475
            +++   +    QL    H Q++K   E  P +  ALLD Y   G   ++ + FDS   +
Sbjct: 561 NMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASR 620

Query: 476 DIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPN 505
           D+V W++++S  A  G+ +KA+++  +++ EG++PN
Sbjct: 621 DVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN 655

[Close]

BLAST of Cp4.1LG20g07460.1 vs. NCBI nr
Match: XP_023519093.1 (pentatricopeptide repeat-containing protein At2g27610 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1004 bits (2595), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
           VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT
Sbjct: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAMELFNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMELFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. NCBI nr
Match: XP_022964727.1 (pentatricopeptide repeat-containing protein At2g27610 isoform X1 [Cucurbita moschata])

HSP 1 Score: 997 bits (2578), Expect = 0.0
Identity = 502/506 (99.21%), Postives = 503/506 (99.41%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVK GYEFDQNVRTALMVTY KCSKVDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKIGYEFDQNVRTALMVTYGKCSKVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAMELFNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMELFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. NCBI nr
Match: KAG7019303.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 996 bits (2575), Expect = 0.0
Identity = 501/506 (99.01%), Postives = 503/506 (99.41%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADES IEVGVQVHAMIVKNGFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESNIEVGVQVHAMIVKNGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIK DYEKVPSVATALLDAYINEGYVVESARVF+SITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKFDYEKVPSVATALLDAYINEGYVVESARVFNSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAMELFNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMELFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. NCBI nr
Match: KAG6583601.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 994 bits (2569), Expect = 0.0
Identity = 500/506 (98.81%), Postives = 502/506 (99.21%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSS RILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSTRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADES IEVGVQVHAMIVKNGFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESNIEVGVQVHAMIVKNGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIK DYEKVPSVATALLDAYINEGYVVESARVF+SITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKFDYEKVPSVATALLDAYINEGYVVESARVFNSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAMELFNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMELFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. NCBI nr
Match: XP_022970293.1 (pentatricopeptide repeat-containing protein At2g27610 isoform X1 [Cucurbita maxima])

HSP 1 Score: 981 bits (2535), Expect = 0.0
Identity = 494/506 (97.63%), Postives = 500/506 (98.81%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSS+HQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSLHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREAL+LFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALYLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVK GFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKYGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLREL+FT QLHCLVVKNG EFDQNVRTALMVTYSKCS VDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELHFTIQLHCLVVKNGNEFDQNVRTALMVTYSKCSTVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNN+ KEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNDTKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAME+FNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMEVFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy TrEMBL
Match: A0A6J1HII8 (pentatricopeptide repeat-containing protein At2g27610 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464718 PE=3 SV=1)

HSP 1 Score: 997 bits (2578), Expect = 0.0
Identity = 502/506 (99.21%), Postives = 503/506 (99.41%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVK GYEFDQNVRTALMVTY KCSKVDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKIGYEFDQNVRTALMVTYGKCSKVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAMELFNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMELFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy TrEMBL
Match: A0A6J1I3H2 (pentatricopeptide repeat-containing protein At2g27610 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469302 PE=3 SV=1)

HSP 1 Score: 981 bits (2535), Expect = 0.0
Identity = 494/506 (97.63%), Postives = 500/506 (98.81%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSS+HQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSLHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREAL+LFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALYLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVK GFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKYGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLREL+FT QLHCLVVKNG EFDQNVRTALMVTYSKCS VDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELHFTIQLHCLVVKNGNEFDQNVRTALMVTYSKCSTVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNN+ KEAVDLFCQMNREGVRPNHFTYSTVLSGKPS
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNDTKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL
Sbjct: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQIGDSEKAME+FNQLVKEGVKPNE+
Sbjct: 481 AQIGDSEKAMEVFNQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy TrEMBL
Match: A0A6J1HLR8 (pentatricopeptide repeat-containing protein At2g27610 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464718 PE=3 SV=1)

HSP 1 Score: 870 bits (2247), Expect = 4.33e-312
Identity = 441/505 (87.33%), Postives = 462/505 (91.49%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVK GYEFDQNVRTALMVTY KCSKVDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKIGYEFDQNVRTALMVTYGKCSKVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLS    
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSATAE 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
               Q+HA  IKS       V++AL+  Y   G +  + +VF     KD V+W++M++G 
Sbjct: 421 HGK-QVHATSIKSGKSNALCVSSALVTMYSKRGNIESANKVFIRQEEKDTVSWNSMITGY 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNE 505
           AQ GD++KA+E+F  +  +G+  ++
Sbjct: 481 AQHGDAKKALEVFQVMQNKGLSMDD 504

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy TrEMBL
Match: A0A6J1I542 (pentatricopeptide repeat-containing protein At2g27610 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469302 PE=3 SV=1)

HSP 1 Score: 854 bits (2207), Expect = 5.18e-306
Identity = 434/505 (85.94%), Postives = 459/505 (90.89%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           MSLGSSMRILKNQAKFTVANGRLQSS+HQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL
Sbjct: 1   MSLGSSMRILKNQAKFTVANGRLQSSLHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDEIPLKDISQYNRLLFEYSRNDHNREAL+LFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ
Sbjct: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALYLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY
Sbjct: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVK GFELNT
Sbjct: 181 ARNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKYGFELNT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
           SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA
Sbjct: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLSQTLFCTILKLCSRLREL+FT QLHCLVVKNG EFDQNVRTALMVTYSKCS VDEA
Sbjct: 301 GVKLSQTLFCTILKLCSRLRELHFTIQLHCLVVKNGNEFDQNVRTALMVTYSKCSTVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMADGAHNVVTWTAMIGGFVQNN+ KEAVDLFCQMNREGVRPNHFTYSTVLS    
Sbjct: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNDTKEAVDLFCQMNREGVRPNHFTYSTVLSATAE 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
               Q+HA  IKS       V++AL+  Y   G +  + +VF     KD V+W++M++G 
Sbjct: 421 HGK-QVHATSIKSGKSNALCVSSALVTMYSKRGNIESANKVFIRQEEKDTVSWNSMITGY 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNE 505
           AQ GD++KA+E+F  +  +G+  ++
Sbjct: 481 AQHGDAKKALEVFQVMQNKGLSMDD 504

[Close]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy TrEMBL
Match: A0A0A0LY35 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G145880 PE=3 SV=1)

HSP 1 Score: 826 bits (2134), Expect = 2.27e-293
Identity = 413/506 (81.62%), Postives = 449/506 (88.74%), Query Frame = 0


Query: 1   MSLGSSMRILKNQAKFTVANGRLQSSIHQIKQLLRPHGFFYHESLPVISQLSHPRYAHQL 60
           M+LGSS+R L+N+AK TV NGRLQSSIH IK  L PHGF YH+SLP IS  S PRYAHQL
Sbjct: 1   MTLGSSLRTLQNKAKITVGNGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQL 60

Query: 61  FDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGVLFDQ 120
           FDE PLKDIS YNRLLF++SRN+H+REALHLFK LHS+GL VDG TLSC LKVCGVLFDQ
Sbjct: 61  FDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQ 120

Query: 121 VVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSLLAGY 180
           VVGRQVH QSLKSGFLE+VSVGT+LVDMYMKT+DFE GR IFDEMG KNVVSWTSLL+GY
Sbjct: 121 VVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGY 180

Query: 181 VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGFELNT 240
            RNG ND +IHLINQMQMEGV PN FTFAT+LG LADES IE GVQVHAMIVKNGFE  T
Sbjct: 181 ARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTT 240

Query: 241 SVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHRMRLA 300
            VCNALIC+YLKSEMVGDAE VFDSM  RDSVTWN+MI GY +IG+ LEGF++FHRMRLA
Sbjct: 241 FVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLA 300

Query: 301 GVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSKVDEA 360
           GVKLS+T+FCT LKLCS+ RELNFT QLHC VVKNGYEF Q++RTALMVTYSKCS VDEA
Sbjct: 301 GVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEA 360

Query: 361 FKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLSGKPS 420
           FKLFSMAD AHNVVTWTAMIGGFVQNNNN++AVDLFCQM+REGVRPNHFTYSTVL+GKPS
Sbjct: 361 FKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPS 420

Query: 421 SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAMLSGL 480
           SLL QLHAQIIK+ YEKVPSVATALLDAY+  G VVESARVF SI  KDIVAWSAML+GL
Sbjct: 421 SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGL 480

Query: 481 AQIGDSEKAMELFNQLVKEGVKPNEF 506
           AQ  DSEKAME+F QLVKEGVKPNE+
Sbjct: 481 AQTRDSEKAMEVFIQLVKEGVKPNEY 506

[Close]

BLAST of Cp4.1LG20g07460.1 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 469.9 bits (1208), Expect = 2.5e-132
Identity = 233/450 (51.78%), Postives = 315/450 (70.00%), Query Frame = 0


Query: 57  AHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGV 116
           AH LFD+ P +D   Y  LLF +SR+   +EA  LF  +H  G+ +D S  S VLKV   
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 117 LFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSL 176
           L D++ GRQ+H Q +K GFL++VSVGT+LVD YMK  +F+ GR++FDEM  +NVV+WT+L
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTL 165

Query: 177 LAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNGF 236
           ++GY RN  ND ++ L  +MQ EG +PN FTFA  LG LA+E     G+QVH ++VKNG 
Sbjct: 166 ISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 225

Query: 237 ELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGFELFHR 296
           +    V N+LI LYLK   V  A ++FD    +  VTWN MI+GY + G DLE   +F+ 
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 285

Query: 297 MRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYSKCSK 356
           MRL  V+LS++ F +++KLC+ L+EL FT QLHC VVK G+ FDQN+RTALMV YSKC+ 
Sbjct: 286 MRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTA 345

Query: 357 VDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYSTVLS 416
           + +A +LF       NVV+WTAMI GF+QN+  +EAVDLF +M R+GVRPN FTYS +L+
Sbjct: 346 MLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILT 405

Query: 417 GKPSSLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVKDIVAWSAM 476
             P     ++HAQ++K++YE+  +V TALLDAY+  G V E+A+VF  I  KDIVAWSAM
Sbjct: 406 ALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465

Query: 477 LSGLAQIGDSEKAMELFNQLVKEGVKPNEF 507
           L+G AQ G++E A+++F +L K G+KPNEF
Sbjct: 466 LAGYAQTGETEAAIKMFGELTKGGIKPNEF 495

[Close]

BLAST of Cp4.1LG20g07460.1 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 1.3e-67
Identity = 137/457 (29.98%), Postives = 239/457 (52.30%), Query Frame = 0


Query: 57  AHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCGV 116
           A  +F  +  +D   YN L+   S+  +  +A+ LFK +H  GL  D +TL+ ++  C  
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA 401

Query: 117 LFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTSL 176
                 G+Q+H+ + K GF  N  +  AL+++Y K  D E   + F E   +NVV W  +
Sbjct: 402 DGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVM 461

Query: 177 LAGY-----VRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMI 236
           L  Y     +RN F      +  QMQ+E + PN +T+ +IL        +E+G Q+H+ I
Sbjct: 462 LVAYGLLDDLRNSF-----RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 521

Query: 237 VKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGF 296
           +K  F+LN  VC+ LI +Y K   +  A  +      +D V+W  MIAGYT   +D +  
Sbjct: 522 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 581

Query: 297 ELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTY 356
             F +M   G++  +      +  C+ L+ L    Q+H     +G+  D   + AL+  Y
Sbjct: 582 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 641

Query: 357 SKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTY 416
           S+C K++E++  F   +   N + W A++ GF Q+ NN+EA+ +F +MNREG+  N+FT+
Sbjct: 642 SRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTF 701

Query: 417 STVLSGKPSSLLC----QLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITV 476
            + +     +       Q+HA I K+ Y+    V  AL+  Y   G + ++ + F  ++ 
Sbjct: 702 GSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVST 761

Query: 477 KDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPN 505
           K+ V+W+A+++  ++ G   +A++ F+Q++   V+PN
Sbjct: 762 KNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPN 792

[Close]

BLAST of Cp4.1LG20g07460.1 vs. TAIR 10
Match: AT3G09040.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-67
Identity = 151/477 (31.66%), Postives = 251/477 (52.62%), Query Frame = 0


Query: 35  RPHGFFYHESLPVISQLSHPRYAHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKG 94
           RP    +   +    +L   + A  LF E+   D+  +N ++  + +      A+  F  
Sbjct: 258 RPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFN 317

Query: 95  LHSTGLAVDGSTLSCVLKVCGVLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDD 154
           +  + +    STL  VL   G++ +  +G  VH++++K G   N+ VG++LV MY K + 
Sbjct: 318 MRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEK 377

Query: 155 FEGGREIFDEMGNKNVVSWTSLLAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGG 214
            E   ++F+ +  KN V W +++ GY  NG +  ++ L   M+  G   +DFTF ++L  
Sbjct: 378 MEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLST 437

Query: 215 LADESKIEVGVQVHAMIVKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTW 274
            A    +E+G Q H++I+K     N  V NAL+ +Y K   + DA  +F+ M  RD+VTW
Sbjct: 438 CAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTW 497

Query: 275 NVMIAGYTSIGYDLEGFELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVK 334
           N +I  Y     + E F+LF RM L G+        + LK C+ +  L    Q+HCL VK
Sbjct: 498 NTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVK 557

Query: 335 NGYEFDQNVRTALMVTYSKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVD 394
            G + D +  ++L+  YSKC  + +A K+FS      +VV+  A+I G+ Q NN +EAV 
Sbjct: 558 CGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP-EWSVVSMNALIAGYSQ-NNLEEAVV 617

Query: 395 LFCQMNREGVRPNHFTYSTVLSG--KPSSLL--CQLHAQIIKSDYEKVPS-VATALLDAY 454
           LF +M   GV P+  T++T++    KP SL    Q H QI K  +      +  +LL  Y
Sbjct: 618 LFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMY 677

Query: 455 INEGYVVESARVFDSI-TVKDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPNE 506
           +N   + E+  +F  + + K IV W+ M+SG +Q G  E+A++ + ++  +GV P++
Sbjct: 678 MNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQ 732

[Close]

BLAST of Cp4.1LG20g07460.1 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 247.7 bits (631), Expect = 2.0e-65
Identity = 147/458 (32.10%), Postives = 245/458 (53.49%), Query Frame = 0


Query: 57  AHQLFDEIPLKDISQYNRLLFEYSRN---DHNREALHLFKGLHSTGLAVDGSTLSCVLKV 116
           AH +F+ I  KD+  +N L+  YS+N     +   + LF+ + +  +  +  TL+ + K 
Sbjct: 68  AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127

Query: 117 CGVLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSW 176
              L    VGRQ H+  +K     ++ V T+LV MY K    E G ++F  M  +N  +W
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTW 187

Query: 177 TSLLAGYVRNGFNDSIIHLINQM--QMEGVKPNDFTFATILGGLADESKIEVGVQVHAMI 236
           +++++GY   G  +  I + N    + E    +D+ F  +L  LA    + +G Q+H + 
Sbjct: 188 STMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCIT 247

Query: 237 VKNGFELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIGYDLEGF 296
           +KNG     ++ NAL+ +Y K E + +A  +FDS   R+S+TW+ M+ GY+  G  LE  
Sbjct: 248 IKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAV 307

Query: 297 ELFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTY 356
           +LF RM  AG+K S+     +L  CS +  L    QLH  ++K G+E      TAL+  Y
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMY 367

Query: 357 SKCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTY 416
           +K   + +A K F       +V  WT++I G+VQN++N+EA+ L+ +M   G+ PN  T 
Sbjct: 368 AKAGCLADARKGFDCLQ-ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTM 427

Query: 417 STVLSGKPS----SLLCQLHAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITV 476
           ++VL    S     L  Q+H   IK  +     + +AL   Y   G + +   VF     
Sbjct: 428 ASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPN 487

Query: 477 KDIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPNE 506
           KD+V+W+AM+SGL+  G  ++A+ELF +++ EG++P++
Sbjct: 488 KDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDD 524

[Close]

BLAST of Cp4.1LG20g07460.1 vs. TAIR 10
Match: AT4G39530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-64
Identity = 140/456 (30.70%), Postives = 241/456 (52.85%), Query Frame = 0


Query: 56  YAHQLFDEIPLKDISQYNRLLFEYSRNDHNREALHLFKGLHSTGLAVDGSTLSCVLKVCG 115
           YA  +FD +P K    +  ++    +   +  +L LF  L    +  DG  LS VL  C 
Sbjct: 201 YARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACS 260

Query: 116 VLFDQVVGRQVHSQSLKSGFLENVSVGTALVDMYMKTDDFEGGREIFDEMGNKNVVSWTS 175
           +L     G+Q+H+  L+ G   + S+   L+D Y+K        ++F+ M NKN++SWT+
Sbjct: 261 ILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTT 320

Query: 176 LLAGYVRNGFNDSIIHLINQMQMEGVKPNDFTFATILGGLADESKIEVGVQVHAMIVKNG 235
           LL+GY +N  +   + L   M   G+KP+ +  ++IL   A    +  G QVHA  +K  
Sbjct: 321 LLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKAN 380

Query: 236 FELNTSVCNALICLYLKSEMVGDAELVFDSMFARDSVTWNVMIAGYTSIG--YDL-EGFE 295
              ++ V N+LI +Y K + + DA  VFD   A D V +N MI GY+ +G  ++L E   
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALN 440

Query: 296 LFHRMRLAGVKLSQTLFCTILKLCSRLRELNFTTQLHCLVVKNGYEFDQNVRTALMVTYS 355
           +F  MR   ++ S   F ++L+  + L  L  + Q+H L+ K G   D    +AL+  YS
Sbjct: 441 IFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYS 500

Query: 356 KCSKVDEAFKLFSMADGAHNVVTWTAMIGGFVQNNNNKEAVDLFCQMNREGVRPNHFTYS 415
            C  + ++  +F       ++V W +M  G+VQ + N+EA++LF ++     RP+ FT++
Sbjct: 501 NCYCLKDSRLVFDEMK-VKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFA 560

Query: 416 TVLSGKPSSLLCQL----HAQIIKSDYEKVPSVATALLDAYINEGYVVESARVFDSITVK 475
            +++   +    QL    H Q++K   E  P +  ALLD Y   G   ++ + FDS   +
Sbjct: 561 NMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASR 620

Query: 476 DIVAWSAMLSGLAQIGDSEKAMELFNQLVKEGVKPN 505
           D+V W++++S  A  G+ +KA+++  +++ EG++PN
Sbjct: 621 DVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN 655

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUW3	3.6e-131	51.78	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX...	[more]
Q9SVP7	1.8e-66	29.98	Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX...	[more]
Q9SS83	2.4e-66	31.66	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidop...	[more]
P93005	2.9e-64	32.10	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX...	[more]
Q9SVA5	1.9e-63	30.70	Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG20g07460.1 vs. NCBI nr


Match Name	Identity	Description
XP_023519093.1	99.80	pentatricopeptide repeat-containing protein At2g27610 isoform X1 [Cucurbita pepo...	[more]
XP_022964727.1	99.21	pentatricopeptide repeat-containing protein At2g27610 isoform X1 [Cucurbita mosc...	[more]
KAG7019303.1	99.01	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6583601.1	98.81	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022970293.1	97.63	pentatricopeptide repeat-containing protein At2g27610 isoform X1 [Cucurbita maxi...	[more]

BLAST of Cp4.1LG20g07460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HII8	0.0	99.21	pentatricopeptide repeat-containing protein At2g27610 isoform X1 OS=Cucurbita mo...	[more]
A0A6J1I3H2	0.0	97.63	pentatricopeptide repeat-containing protein At2g27610 isoform X1 OS=Cucurbita ma...	[more]
A0A6J1HLR8	4.33e-312	87.33	pentatricopeptide repeat-containing protein At2g27610 isoform X2 OS=Cucurbita mo...	[more]
A0A6J1I542	5.18e-306	85.94	pentatricopeptide repeat-containing protein At2g27610 isoform X2 OS=Cucurbita ma...	[more]
A0A0A0LY35	2.27e-293	81.62	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G1458...	[more]

BLAST of Cp4.1LG20g07460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27610.1	2.5e-132	51.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G13650.1	1.3e-67	29.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G09040.1	1.7e-67	31.66	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G33680.1	2.0e-65	32.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39530.1	1.3e-64	30.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 272..302 e-value: 3.0E-5 score: 24.0 coord: 242..267 e-value: 0.067 score: 13.5 coord: 345..365 e-value: 1.1 score: 9.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 468..506 e-value: 9.5E-9 score: 35.3 coord: 372..417 e-value: 1.9E-15 score: 56.8 coord: 168..216 e-value: 8.6E-11 score: 41.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 471..505 e-value: 5.7E-8 score: 30.5 coord: 374..407 e-value: 2.0E-6 score: 25.6 coord: 242..269 e-value: 0.002 score: 16.2 coord: 171..204 e-value: 6.3E-4 score: 17.7 coord: 272..305 e-value: 2.9E-4 score: 18.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 469..503 score: 12.660359
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 372..406 score: 12.145178
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 169..203 score: 10.840783
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 270..304 score: 10.457138
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 222..327 e-value: 5.9E-18 score: 66.8 coord: 421..509 e-value: 6.6E-13 score: 50.4 coord: 20..118 e-value: 1.7E-6 score: 29.5 coord: 119..221 e-value: 2.9E-20 score: 74.4 coord: 328..420 e-value: 2.7E-19 score: 71.2
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 196..504 coord: 56..302
None	No IPR available	PANTHER	PTHR47924:SF8	SUBFAMILY NOT NAMED	coord: 106..416
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 106..416
None	No IPR available	PANTHER	PTHR47924:SF8	SUBFAMILY NOT NAMED	coord: 196..504 coord: 56..302

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG20g07460	Cp4.1LG20g07460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g07460.1:exon:002	Cp4.1LG20g07460.1:exon:002	exon
Cp4.1LG20g07460.1:exon:001	Cp4.1LG20g07460.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g07460.1:cds:002	Cp4.1LG20g07460.1:cds:002	CDS
Cp4.1LG20g07460.1:cds:001	Cp4.1LG20g07460.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g07460.1	Cp4.1LG20g07460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding