Cp4.1LG20g03580.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g03580.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG20: 2056688 .. 2060429 (+)
Sequence length828
RNA-Seq ExpressionCp4.1LG20g03580.1
SyntenyCp4.1LG20g03580.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAGTGTTGTGCTTGTTGTAAGCTTTGTGTTGGCGAAGGGGAATGTATGAATGTATGGATGGATGTTGTATGTATATATGTATGTATGGATGGATGGTGGAGAGATGGTGTATGGTGTATGATGATGCATTGACCATATTGATGCTGGTTATTCAGGATCCATGGCAATGTGCTTGAATTATCTTCTTGTAGTAATAAAAGCTGCTCAATTGTTAATTGTTCATCTTGATTTAACCAAGAACTCGGTCAATATATGAGTGGAGTGGAGGGGTTTTACAAAAACAAAACAAAGTGGTTACTTGGTCAATAGACGACCCCACGTTGAAGGACAAACAATTCAATGTGGTCTAGGTTTGGTAATACTTCTTACTCAAAGACCACCCTGCTCCGATCGTCAATCATATGGTTTGGTACTGCTCTTGTTCTTCTATGATACATAGTACCTCTACATCTCATTCATCCTATCTTCTTTTTGGAGATTGCTATGTTGTTTTTTACCAGCCTTTTTTGGACTATTCTTGTTATATGTGACTCTTCTTCCTGCCGTTGTAGCAAATACATTCAGATCTCTTGTACATAAGAACTCTTGTTGTCGTTCTTCTAAGCTTTTCAAGGTTGTGCAGATCCTTGGTAACTTCTTTCCTTTGTCACCATTTTTGTATCCACACTTGGTAGACATCTTATTGTTGTTTTGTAGAGTGTTTCTTCTTCATCATCATTTAATGTGGAGTCTTCCAGCCACTTCTTTGTTGGCTAACAAATTTTCTATCTCTACCAGTAATGGTTGAGTGGGTCATCCTTGTATATAGCAGTAATGGAACTTCTATATTCTGGTCGCAATCCATGGATAATGATCCTTTTCATTTGAGCTCCTCCAATGACAAACGTTGGATCTAATTCAGTAATCTCTCGACAGGTTGACTTGACCATATGAAAGTATTGAACAATCGTCATATCACATTGTGAGATTGACAACAGCTCGTCCTCCAGAAGTTGTAGCCTTGTATTGTTCTCTTTAAGAATAACATCAAGAACATGTCCCATGCTTCTTTTGGTATCTTGTCATTTCGAATGTGTTCTAACATCTCTTTTTCGATCGTGGTCTTCAAGGTAAACATTGTTTAGAAGAATAACATCAAGAACGTGTCCCATGCTTCTTTTGGTATCTTGTCATTTCGAATGTGTTCTAACATCTCTTTTTCGATTGTGGTCTTCAAGGTAAACATTGTTTGTCTACTTTAATTTTCCATTTGCGCAAGGCACCATTAAAATCCTCCTCTAACGGCGTAGTTTCACTCCCGTCAACGACCTCCCAAAAGTCATGTCCTTGTAAATAGGACATCATGCATGTTGCCCAAATGTTGTAATTCTTGTTATTAAGTTTATGAATTCCTCAAACGATTTGGAAATCACTTATCGTGTTAGTAATACCTTATTAATACCAAAGAAGCATGTTCGACACAAAACTTGCAAAGTCACGGACTACTCACAACACAAAGAAAATAATTCACTAATAATCTCAATAAATCGTTTCTGATATACAAGATCATACACAGCTACAACCACAGAAAGTACTAAGCATCTTAAGATATTAAACAACCTATATCAACCTCGCTCTGATACCAAATTATTGAACACAATCGACAACTTTTTGTTGGAACCAGTTTCAATAATTAAAATAATATCACGTAATTAATAACAAAATCATTTATCATGACGTGGCCTTGAGTTGAAGTTTAGAACATATTCAAGCAGGTAATTGGGCCGGCCCACTAATGACCCAAAACAACGCATACGATCTTTACCGAATTAGGTCAACACAGAAACCTAATTGGGGGCGATTCTGCCGCCTCGCTATCTGTATAAAAGCCGATGGCCACTTTGCTAATTTCATTATCCATCCTCTTCCGTCTCGGTTAGGGTTTCCTCGCTTCCTCGGAAACGAAGGTTCAGTTGGACATGGCGTCAATTATTTTTTAATTGATAAGTTCTTTAGGTGAATTAGCTGCTTCTTCTTCATTGTTTATGATCTTTAGCGTTCGATGCTTCATCATCTGGCGAATGTGGATTCAATCTGTTCCCATTTGACTCGTTCCCTTGAAGCAAGATTGAGTGTGTTACATCCTGGTTTCTTAAATTCTCTTGCGGTGTTTACCATTACTACATGAGAACGCGGGAGTAACTATATATTTTTTTTATTATTATTCTCTTGTTCATGAGTTTATTTTAGTTTTTTTTTTTTTTTTTCTCTTGATCCTTGTTGGAACTTATTTTCTCTCGATAAATGATGATTCGGAGTGCTGTTCTAACGGTGATGAGTCTATCAGACCTGTTATGATTTGCGAATATGATCGCAATCCATAATGAACATCTAAGGGACTGAGTTACTTCGTTGTTCTCCGATTTGTTTTTTATAATGCTACGAAAATGACCACTAGTCTCTACTTTTCTATCACCATAGTTTCTTTCTAGATTAACGTAGTACGTACTAAATGAAATATCTTTGGCCTCACTTTTTTAAAACTGGAAATCTATCTAGCTTCCAATTCGATGAAGCAGGATCCATTTGTGAGGCCTAAAGCTATGTTCTCCTCGCTATCCAGAGTTTCACTTTACATGATTCATTTGGACGTCGGAGAACTACATTTATTTTTTCGTTTCAATATTTTTTATATGTTCTCATTAATTTAATCTTGTTACATTAACCTTTGAAATTCTCAGCTGTCAGTTCCTTCAGGTACTACGAGGCTCTGAGCTCTTCTTCCCTCATAGACGAAGTTGGCCATTTGTATAACTGGTTGCTTGGATTTCATTCACAGGATGGTAATTTGAGATCGTGTAATATTTTCTTCTTCCGATTATTTGGGTTTCAACAACTTTTCAACGCGGACATCGTTTCTCATCAAGGCCCATACCGTTTTTCTACGAATGTTGTAATCTGTTTCTGTAAATATTTGATCCATTTAATGACAACATTCTCGGTGTTGTGCAACGTTATTTATGTTTTTCTCTTCTCTTGTTTTTCTTAATTTACCATCATCGTACTAGTTCAGACCAACAAAGCATCTATATCGATACCGTTTATTCAAACGAAATAGACTTCTTTTTTTACGTGATAAATCTACCGTTCTTTTTCTGTATCATAGGCTTTCGAAACTTTTGTACGATATGATTCTACAGTCAGATTTTGTTGTTGTCGTTTAGTTGTAAGTTTCTTTTTGAAGATGTTATACTTGAATTCATCCTTAGATGTTAACTTAGAAGCACGATTTGAACTCGCTAAGAACATTAGACTCGGTTTATACTATCCTTGTACCATATCGAGATTAACAGAACTCGGTTTCGGTGGTACTCCATCGACACCGTCCTCAGAATCTTTCTCCGATCGGGCACGTTCGTTCACATGGAATATTTCTCGGCGACAATTCTCCCCTGTCGTCCTTCCAGTATCTTGTAAATCAATCGCCACTTCGCCGACGCCGTTCATCACGCGACGTCGATCTCCGTCGAGTTCTGATGACTGCATTGTTCCCGTAAATTTCATAGTTGCCATTGGCTGAATTGTCAAAAATCGATCACACATCTTCGCGGAACTCTGATGAGTCGCACTATATGTGCCTTGAGAGTGTCTATCGCTATGTCTCCCGAGGAACCGTTCGTTCCTCTTTACCCCAACTTCCGTCCTTTCGTTATCCGCCGGCCAAATTTCCGAATATTTCATCAACAAAACTTCAATAA

mRNA sequence

ATGCTAAGTAATTGGGCCGGCCCACTAATGACCCAAAACAACGCATACGATCTTTACCGAATTAGGTCAACACAGAAACCTAATTGGGGGCGATTCTGCCGCCTCGCTATCTGTATAAAAGCCGATGGCCACTTTGCTAATTTCATTATCCATCCTCTTCCGTCTCGGTTAGGGTTTCCTCGCTTCCTCGGAAACGAAGGTTCAGTTGGACATGGCCGTTCGATGCTTCATCATCTGGCGAATGTGGATTCAATCTGTTCCCATTTGACTCGTTCCCTTGAAGCAAGATTGAGTGTGTTACATCCTGGTTTCTTAAATTCTCTTGCGATGTTATACTTGAATTCATCCTTAGATGTTAACTTAGAAGCACGATTTGAACTCGCTAAGAACATTAGACTCGGTTTATACTATCCTTGTACCATATCGAGATTAACAGAACTCGGTTTCGGTGGTACTCCATCGACACCGTCCTCAGAATCTTTCTCCGATCGGGCACGTTCGTTCACATGGAATATTTCTCGGCGACAATTCTCCCCTGTCGTCCTTCCAGTATCTTGTAAATCAATCGCCACTTCGCCGACGCCGTTCATCACGCGACGTCGATCTCCGTCGAGTTCTGATGACTGCATTGTTCCCTTGCCATTGGCTGAATTGTCAAAAATCGATCACACATCTTCGCGGAACTCTGATGAGTCGCACTATATGTGCCTTGAGAGTGTCTATCGCTATGTCTCCCGAGGAACCGTTCGTTCCTCTTTACCCCAACTTCCGTCCTTTCGTTATCCGCCGGCCAAATTTCCGAATATTTCATCAACAAAACTTCAATAA

Coding sequence (CDS)

ATGCTAAGTAATTGGGCCGGCCCACTAATGACCCAAAACAACGCATACGATCTTTACCGAATTAGGTCAACACAGAAACCTAATTGGGGGCGATTCTGCCGCCTCGCTATCTGTATAAAAGCCGATGGCCACTTTGCTAATTTCATTATCCATCCTCTTCCGTCTCGGTTAGGGTTTCCTCGCTTCCTCGGAAACGAAGGTTCAGTTGGACATGGCCGTTCGATGCTTCATCATCTGGCGAATGTGGATTCAATCTGTTCCCATTTGACTCGTTCCCTTGAAGCAAGATTGAGTGTGTTACATCCTGGTTTCTTAAATTCTCTTGCGATGTTATACTTGAATTCATCCTTAGATGTTAACTTAGAAGCACGATTTGAACTCGCTAAGAACATTAGACTCGGTTTATACTATCCTTGTACCATATCGAGATTAACAGAACTCGGTTTCGGTGGTACTCCATCGACACCGTCCTCAGAATCTTTCTCCGATCGGGCACGTTCGTTCACATGGAATATTTCTCGGCGACAATTCTCCCCTGTCGTCCTTCCAGTATCTTGTAAATCAATCGCCACTTCGCCGACGCCGTTCATCACGCGACGTCGATCTCCGTCGAGTTCTGATGACTGCATTGTTCCCTTGCCATTGGCTGAATTGTCAAAAATCGATCACACATCTTCGCGGAACTCTGATGAGTCGCACTATATGTGCCTTGAGAGTGTCTATCGCTATGTCTCCCGAGGAACCGTTCGTTCCTCTTTACCCCAACTTCCGTCCTTTCGTTATCCGCCGGCCAAATTTCCGAATATTTCATCAACAAAACTTCAATAA

Protein sequence

MLSNWAGPLMTQNNAYDLYRIRSTQKPNWGRFCRLAICIKADGHFANFIIHPLPSRLGFPRFLGNEGSVGHGRSMLHHLANVDSICSHLTRSLEARLSVLHPGFLNSLAMLYLNSSLDVNLEARFELAKNIRLGLYYPCTISRLTELGFGGTPSTPSSESFSDRARSFTWNISRRQFSPVVLPVSCKSIATSPTPFITRRRSPSSSDDCIVPLPLAELSKIDHTSSRNSDESHYMCLESVYRYVSRGTVRSSLPQLPSFRYPPAKFPNISSTKLQ
Homology
The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g03580.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g03580.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g03580.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g03580.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG20g03580Cp4.1LG20g03580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG20g03580.1:exon:001Cp4.1LG20g03580.1:exon:001exon
Cp4.1LG20g03580.1:exon:002Cp4.1LG20g03580.1:exon:002exon
Cp4.1LG20g03580.1:exon:003Cp4.1LG20g03580.1:exon:003exon
Cp4.1LG20g03580.1:exon:004Cp4.1LG20g03580.1:exon:004exon
Cp4.1LG20g03580.1:exon:005Cp4.1LG20g03580.1:exon:005exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG20g03580.1:cds:001Cp4.1LG20g03580.1:cds:001CDS
Cp4.1LG20g03580.1:cds:002Cp4.1LG20g03580.1:cds:002CDS
Cp4.1LG20g03580.1:cds:003Cp4.1LG20g03580.1:cds:003CDS
Cp4.1LG20g03580.1:cds:004Cp4.1LG20g03580.1:cds:004CDS
Cp4.1LG20g03580.1:cds:005Cp4.1LG20g03580.1:cds:005CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG20g03580.1Cp4.1LG20g03580.1-proteinpolypeptide