Cp4.1LG18g04880.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g04880.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionAlba domain-containing protein
LocationCp4.1LG18: 5700484 .. 5705012 (+)
Sequence length973
RNA-Seq ExpressionCp4.1LG18g04880.1
SyntenyCp4.1LG18g04880.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTAAAGAAAGTCCATCACTTTCACTCTCCTTTCTCATAGTCGCACTTCCAGAAGTGAGTGTTAGGGTTAGGGTTTTAGGTTTCAGAAGCTCGATGGAAGAGATTACAGAGGGTGTCAACTCCATTGCATTGACAGCTGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTATTCTTCTATGTTAATCTCGCCAAGGTTTGTTTCCTTTCGACTCTTGGCTTCGGATTCGCTTCATTTATTGACTCCTTCCCAATCTGGCTTCTCTAATTTGGTATAAATTGTTAACAGGTTCATTGTTTTGGGATTTGTCTGTTCGTTTATCTGGTTTGTTTTGCTAACCCTCTGGTTACCGATTTTTCTTTTTTCCAATTTATGTAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGGATGGGTAGGTTTTCTATACTGTTTTTACTCCTAATATTAATGGCTATCCATTTTGAGAAGTGCGGATTTGCCTCATAGCCATAGTATGTTTATTCAAGTTTGAAACTGGGACACTTGAATACTCTGCTTAAATGATGGATTTTTTGTAATGTTCTCATGTGGGTAGTCGACTTTTCATTGTTTTTTATGCGACAATTGAAACATTTTTCTATTTGAATTTCAATGCAGTCAATTGATCCTTTCAAATGGTGGTTTGGGTTATTAGTATGTTAAAACTTCTATGTATGCCTTTGCAGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAGTAAATATCCTCTTCCTTCTTTTTTTGGAATATACTATTGGGGCTACCTCTTAGAGATAATGACTTCTTTAGAGATGATGAATATAATTTTGAATGCTCACAAAAATTTTCTTATCTTCTATAGAGATAATGACTTCTACTGTTGATATCAAGGATGATTCTCGAGGGAGACCAGTTCAAAAAGCTAAGGTAATACGTCGTACTGCTTTCTTGCTTTGTTACTTCACAATGGATGATAATTTGGAAGCTGCCTCTCTCGTTTTTTCTCCCTTAAAAGAAACATTGCAAGAGATTTCTCTCTCGTATTTTGGCACATAAAAGTATACCCTCGTGTAACTTCCAATCCGATTTATCACGTTTATTTACTTTCATATTTGGACCCTAGAAATTAGTGGTGTGGGTTACAGACGTTTATTCACTGAGCGTGCAAATTAATTGCTGGGACTGTGCGAAATTTCTCTGTGATTTTCATCTGATTAGATAAGTCTAACATTTGTAATGACTGATTTTTACCTTCTAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGAGAAAACGAAGATGGTGAAGAGCAGAGTTGAAAAGGTTTTTTTTTTTTCTTTTTTGTTCTTATCCTCCTTGTGGATGACTCTTGTTCTTTCCTTATATCTGGTCTCTCTGTTGTTAATTACGTTAGTAAACAAGTGGTTCATTTACTGATGTAGGTTTTTTAGTTGGGGAATCATTGACTTGCCCATTTTTAGGTACCATGGGATATCTTTGTTTAAGAGAGTGGAAACATAATCTGATTCTTCAGTTTTGGTAAATATGCATTCGATAGATGATCTGCTTCAGAAATTTAAACTGCATTCAAAGTATTTTTACATGTAGTACGATTTAACCTTGTTTCCCACAATCTGATAATCACTTTGGACGAACTGCACATGTAAGGTCAAAAGAGAATGCTTTTGAGAAACATGTTTTTTCATGGCATGGTACTCTCCTAACCGATCCCACATTGGGTTCCATTTATTTGTCCTCAAGTCTGATACAGTGGGGAAGTGCCCTTTTTTTTTTGTATTCTCTTCATCAAAGTAGCTAATATACCGTATTGGTACAATTGAAGCATCTTCTTCTTTCTCGATCTCAGTATTCTCTTTGATACTCTCTCTATAAAGCACAGGAAAACTATTCCTACGGCTTGGACAAGCTTAAAGTAGCTTTCCTCCCGTGCGTAAACTTTCTTGTTAGATCACACGTCGGTTGGAGAGGGGAACAAAATATTCCTTATAAGAGTGTGGAAACCTCTCCCTGGTGGATGCGTTTTTAAACTTTGAGGGGAAGTTCGAAAGGGAAAGTCCAAAGAGGACAATATCNGATGGGTAGGTTTTCTATACTGTTTTTACTCCTAATATTAATGGCTATCCATTTTGAGAAGTGCGGATTTGCCTCATAGCCATAGTATGTTTATTCAAGTTTGAAACTGGGACACTTGAATACTCTGCTTAAATGATGGATTTTTTGTAATGTTCTCATGTGGGTAGTCGACTTTTCATTGTTTTTTATGCGACAATTGAAACATTTTTCTATTTGAATTTCAATGCAGTCAATTGATCCTTTCAAATGGTGGTTTGGGTTATTAGTATGTTAAAACTTCTATGTATGCCTTTGCAGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAGTAAATATCCTCTTCCTTCTTTTTTTGGAATATACTATTGGGGCTACCTCTTAGAGATAATGACTTCTTTAGAGATGATGAATATAATTTTGAATGCTCACAAAAATTTTCTTATCTTCTATAGAGATAATGACTTCTACTGTTGATATCAAGGATGATTCTCGAGGGAGACCAGTTCAAAAAGCTAAGGTAATACGTCGTACTGCTTTCTTGCTTTGTTACTTCACAATGGATGATAATTTGGAAGCTGCCTCTCTCGTTTTTTCTCCCTTAAAAGAAACATTGCAAGAGATTTCTCTCTCGTATTTTGGCACATAAAAGTATACCCTCGTGTAACTTCCAATCCGATTTATCACGTTTATTTACTTTCATATTTGGACCCTAGAAATTAGTGGTGTGGGTTACAGACGTTTATTCACTGAGCGTGCAAATTAATTGCTGGGACTGTGCGAAATTTCTCTGTGATTTTCATCTGATTAGATAAGTCTAACATTTGTAATGACTGATTTTTACCTTCTAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGAGAAAACGAAGATGGTGAAGAGCAGAGTTGAAAAGGTTTTTTTTTTTTCTTTTTTGTTCTTATCCTCCTTGTGGATGACTCTTGTTCTTTCCTTATATCTGGTCTCTCTGTTGTTAATTACGTTAGTAAACAAGTGGTTCATTTACTGATGTAGGTTTTTTAGTTGGGGAATCATTGACTTGCCCATTTTTAGGTACCATGGGATATCTTTGTTTAAGAGAGTGGAAACATAATCTGATTCTTCAGTTTTGGTAAATATGCATTCGATAGATGATCTGCTTCAGAAATTTAAACTGCATTCAAAGTATTTTTACATGTAGTACGATTTAACCTTGTTTCCCACAATCTGATAATCACTTTGGACGAACTGCACATGTAAGGTCAAAAGAGAATGCTTTTGAGAAACATGTTTTTTCATGGCATGGTACTCTCCTAACCGATCCCACATTGGGTTCCATTTATTTGTCCTCAAGTCTGATACAGTGGGGAAGTGCCCTTTTTTTTTTGTATTCTCTTCATCAAAGTAGCTAATATACCGTATTGGTACAATTGAAGCATCTTCTTCTTTCTCGATCTCAGTATTCTCTTTGATACTCTCTCTATAAAGCACAGGAAAACTATTCCTACGGCTTGGACAAGCTTAAAGTAGCTTTCCTCCCGTGCGTAAACTTTCTTGTTAGATCACACGTCGGTTGGAGAGGGGAACAAAATATTCCTTATAAGAGTGTGGAAACCTCTCCCTGGTGGATGCGTTTTTAAACTTTGAGGGGAAGTTCGAAAGGGAAAGTCCAAAGAGGACAATATCCGAGCGAGACATCGGTAGTGCGCCAGGGAGGACGCTAGGCCTCCAAGGGGATGGATTGTGAGATCTCACATAGGTTGGAGAGGAACAAAACATTTCTTAGAAGGGTGTGGAAACTCTCCTTGTTGGACGTGTTTTAAAATCTTGAGGGAGAGCTCGAAAGGAATAGTCTAAAAAATACAATATCTGCTAGCGGTGGGCTTAAAATTTGGAAGTCCCTCTCCTTTGGTCTCCTTGTTCTTAATTATTTTTTCCGTTCTTATCCTCCTTGCTTGTGGGTTATCGCTGATAACAGTTACAAACTATGGTGCTTAGGAATCGCTTCCATCAACAAAGCTAAAGGAAAGAGAAGACAAAACATGTTATTACTTCATGGCACAGAGAATATCACTCAATAGAGCAGGTTTCAAACTCTGTATTAGTTCCATTTGGCAACGTGATGCTCGAATTCAGCTATTTAAACTGTACTTTATGTATGACCATGAACCTCTTTTTGTCACTGAAAATTTGTGGTTTTAGTCAATTTTTATCTCTTAGATATTGAAAATTTGTGATTCATTTTTGTCGATTGTTAGAGAATTATAAGATT

mRNA sequence

AAATTAAAGAAAGTCCATCACTTTCACTCTCCTTTCTCATAGTCGCACTTCCAGAAGTGAGTGTTAGGGTTAGGGTTTTAGGTTTCAGAAGCTCGATGGAAGAGATTACAGAGGGTGTCAACTCCATTGCATTGACAGCTGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTATTCTTCTATGTTAATCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGGATGGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATAATGACTTCTACTGTTGATATCAAGGATGATTCTCGAGGGAGACCAGTTCAAAAAGCTAAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGAGAAAACGAAGATGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATAATGACTTCTACTGTTGATATCAAGGATGATTCTCGAGGGAGACCAGTTCAAAAAGCTAAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGAGAAAACGAAGATGGTGAAGAGCAGAGTTGAAAAGGAATCGCTTCCATCAACAAAGCTAAAGGAAAGAGAAGACAAAACATGTTATTACTTCATGGCACAGAGAATATCACTCAATAGAGCAGGTTTCAAACTCTGTATTAGTTCCATTTGGCAACGTGATGCTCGAATTCAGCTATTTAAACTGTACTTTATGTATGACCATGAACCTCTTTTTGTCACTGAAAATTTGTGGTTTTAGTCAATTTTTATCTCTTAGATATTGAAAATTTGTGATTCATTTTTGTCGATTGTTAGAGAATTATAAGATT

Coding sequence (CDS)

ATGGAAGAGATTACAGAGGGTGTCAACTCCATTGCATTGACAGCTGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTATTCTTCTATGTTAATCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGGATGGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATAATGACTTCTACTGTTGATATCAAGGATGATTCTCGAGGGAGACCAGTTCAAAAAGCTAAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGAGAAAACGAAGATGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATAATGACTTCTACTGTTGATATCAAGGATGATTCTCGAGGGAGACCAGTTCAAAAAGCTAAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCTGCTGCAGAGGAAAGAGAAAACGAAGATGGTGAAGAGCAGAGTTGA

Protein sequence

MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEERENEDAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEERENEDGEEQS
Homology
[Close]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-51
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RENEDA 127
           +E+ +A
Sbjct: 121 KEDAEA 126

[Close]
BLAST of Cp4.1LG18g04880.1 vs. NCBI nr
Match: XP_022961070.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023516863.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >XP_023516864.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >XP_023516865.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >KAG6589857.1 hypothetical protein SDJN03_15280, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023529.1 hypothetical protein SDJN02_14555 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (596), Expect = 7.52e-76
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. NCBI nr
Match: XP_004150019.1 (uncharacterized protein At2g34160 [Cucumis sativus] >XP_008444017.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >XP_022144816.1 uncharacterized protein At2g34160-like [Momordica charantia] >XP_038878653.1 uncharacterized protein At2g34160-like [Benincasa hispida] >KAA0046788.1 Alba domain-containing protein [Cucumis melo var. makuwa] >KGN65316.1 hypothetical protein Csa_020079 [Cucumis sativus] >TYK29659.1 Alba domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 232 bits (592), Expect = 3.06e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. NCBI nr
Match: XP_022987902.1 (uncharacterized protein At2g34160-like [Cucurbita maxima] >XP_022987903.1 uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 232 bits (591), Expect = 4.34e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAA EE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAEEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. NCBI nr
Match: XP_022924689.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023529342.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo] >KAG7021810.1 hypothetical protein SDJN02_15538 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231 bits (589), Expect = 8.75e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           REN D
Sbjct: 121 RENGD 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. NCBI nr
Match: XP_022972044.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 231 bits (589), Expect = 9.66e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 4   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 63

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 64  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 123

Query: 121 RENED 125
           REN D
Sbjct: 124 RENGD 128

[Close]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy TrEMBL
Match: A0A6J1HAY2 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111461689 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 3.64e-76
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy TrEMBL
Match: A0A5A7TV88 (Alba domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00010 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.48e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy TrEMBL
Match: A0A0A0LZB6 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G320340 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.48e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy TrEMBL
Match: A0A6J1CUJ0 (uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC111014408 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.48e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy TrEMBL
Match: A0A1S3B8Y2 (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103487464 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.48e-75
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120

Query: 121 RENED 125
           RENED
Sbjct: 121 RENED 125

[Close]
BLAST of Cp4.1LG18g04880.1 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-52
Identity = 107/126 (84.92%), Postives = 115/126 (91.27%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEITEGVN++ L  D+QKKNRIQVSNTKKPLFFYVNLAKRYMQQY +VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNG A+EKKIMTSTVDIKDDSRGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

Query: 121 RENEDA 127
           +E  +A
Sbjct: 121 KEAAEA 126

[Close]
BLAST of Cp4.1LG18g04880.1 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-52
Identity = 106/126 (84.13%), Postives = 116/126 (92.06%), Query Frame = 0 

Query: 1   MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIAT 60
           MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RENEDA 127
           +E+ +A
Sbjct: 121 KEDAEA 126

[Close]
BLAST of Cp4.1LG18g04880.1 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 154.5 bits (389), Expect = 9.2e-38
Identity = 78/112 (69.64%), Postives = 96/112 (85.71%), Query Frame = 0 

Query: 14  TADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGL 73
           T ++ KKNRIQVSNTKKPLFFYVNLAKRY+QQ+NEVELSALGMAI TVVT++EILKNNGL
Sbjct: 31  TVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGL 90

Query: 74  ALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEERENED 126
           A EKK++TSTV +KD+++G+ VQKAKIEIVLGK++ FD L+      +  E+
Sbjct: 91  ATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEE 142

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g04880.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O229697.1e-5184.13Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P... [more]
BLAST of Cp4.1LG18g04880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961070.17.52e-76100.00uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023516863.1 unch... [more]
XP_004150019.13.06e-7599.20uncharacterized protein At2g34160 [Cucumis sativus] >XP_008444017.1 PREDICTED: u... [more]
XP_022987902.14.34e-7599.20uncharacterized protein At2g34160-like [Cucurbita maxima] >XP_022987903.1 unchar... [more]
XP_022924689.18.75e-7599.20uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023529342.1 unch... [more]
XP_022972044.19.66e-7599.20uncharacterized protein At2g34160-like [Cucurbita maxima][more]
BLAST of Cp4.1LG18g04880.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HAY23.64e-76100.00uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A5A7TV881.48e-7599.20Alba domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0LZB61.48e-7599.20Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G320340 PE=4 S... [more]
A0A6J1CUJ01.48e-7599.20uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A1S3B8Y21.48e-7599.20uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103487464 P... [more]
BLAST of Cp4.1LG18g04880.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G29250.13.9e-5284.92Alba DNA/RNA-binding protein [more]
AT2G34160.15.0e-5284.13Alba DNA/RNA-binding protein [more]
AT3G04620.19.2e-3869.64Alba DNA/RNA-binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036882Alba-like domain superfamilyGENE3D3.30.110.20coord: 19..124
e-value: 2.4E-56
score: 190.6
coord: 125..199
e-value: 2.5E-29
score: 103.6
IPR036882Alba-like domain superfamilySUPERFAMILY82704AlbA-likecoord: 126..184
IPR036882Alba-like domain superfamilySUPERFAMILY82704AlbA-likecoord: 20..115
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 21..74
e-value: 2.7E-12
score: 46.3
NoneNo IPR availablePANTHERPTHR31947:SF32SUBFAMILY NOT NAMEDcoord: 126..199
coord: 1..125
IPR014560Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-relatedPANTHERPTHR31947DNA/RNA-BINDING PROTEIN ALBA 3coord: 126..199
coord: 1..125

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG18g04880Cp4.1LG18g04880gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g04880.1:five_prime_utr:001Cp4.1LG18g04880.1:five_prime_utr:001five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g04880.1:exon:001Cp4.1LG18g04880.1:exon:001exon
Cp4.1LG18g04880.1:exon:002Cp4.1LG18g04880.1:exon:002exon
Cp4.1LG18g04880.1:exon:003Cp4.1LG18g04880.1:exon:003exon
Cp4.1LG18g04880.1:exon:004Cp4.1LG18g04880.1:exon:004exon
Cp4.1LG18g04880.1:exon:005Cp4.1LG18g04880.1:exon:005exon
Cp4.1LG18g04880.1:exon:006Cp4.1LG18g04880.1:exon:006exon
Cp4.1LG18g04880.1:exon:007Cp4.1LG18g04880.1:exon:007exon
Cp4.1LG18g04880.1:exon:008Cp4.1LG18g04880.1:exon:008exon
Cp4.1LG18g04880.1:exon:009Cp4.1LG18g04880.1:exon:009exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g04880.1:cds:001Cp4.1LG18g04880.1:cds:001CDS
Cp4.1LG18g04880.1:cds:002Cp4.1LG18g04880.1:cds:002CDS
Cp4.1LG18g04880.1:cds:003Cp4.1LG18g04880.1:cds:003CDS
Cp4.1LG18g04880.1:cds:004Cp4.1LG18g04880.1:cds:004CDS
Cp4.1LG18g04880.1:cds:005Cp4.1LG18g04880.1:cds:005CDS
Cp4.1LG18g04880.1:cds:006Cp4.1LG18g04880.1:cds:006CDS
Cp4.1LG18g04880.1:cds:007Cp4.1LG18g04880.1:cds:007CDS
Cp4.1LG18g04880.1:cds:008Cp4.1LG18g04880.1:cds:008CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g04880.1:three_prime_utr:001Cp4.1LG18g04880.1:three_prime_utr:001three_prime_UTR
Cp4.1LG18g04880.1:three_prime_utr:002Cp4.1LG18g04880.1:three_prime_utr:002three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG18g04880.1Cp4.1LG18g04880.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding