Cp4.1LG18g02580.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG18g02580.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG18: 4206517 .. 4209317 (-)
Sequence length1558
RNA-Seq ExpressionCp4.1LG18g02580.1
SyntenyCp4.1LG18g02580.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGAATCACCTACTTCCGCAACATTGTTCTCATCTTCTTTCATCCAATCATAAACGCCCACGTACTCGAGAGCAAATAAATCCGTCCGTAGCAGATCGTCAAGAATACAAAATTAGCCAGTATAAATAAAGCAAACGCCATTGATGGGTTCACCGGAGCTAGGGTTTCTCCCCCGAATTCTCTCCTCTTCTTGATCGAAGGTTTCTCCTCACAAATCGGCACGTATTCTCTCAATCAACAGATTTTAAAAAAGCGTCGATTTGGCTTTGATTTGATTTGCTTTACCCAGAAAGGGAGGAAAAAAGGGAAAAAACAGCAACAATCGATCAGCCATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCTAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGCGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGGTTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGTAGCTTCAAGAAGTGAAATAAATCCGGATTTCATGATGATGATTAGGGTGGGTGGGCTCAATTCTATGNTTGTTGTGGGAGATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTGCTGATGGAAAGTGGTTTTTAACTTGTAAGGTGTTTGAGTAAAACATATTTGATGTCCTTGGAGCTGCAGTCTCCCTTCTTGAGCTTCTTGCAATTATGTATATGTCATAAAAACATGATCATGGTTGTTATGGTAATGATGGAGGTGTTTCATGTTCTTATTTCCGTGCTTATCATGTCATATGTTTAATTTTAGTTAGATTAGAGTGAGCTTAAGGTGTTGCTGGAATGTTGCAGGCTTAAGCTGTTTATGACTTGAGAATATGTTGTGTGATTTTTATTGTTATTTTGATATTTAGAAAGTAGATTACTGGGGAATGATTAAGAGTTGACCCAGCTCTGAAGGAGGAATTTCGTAAATCCAATCGTCTCTGTGGTCGTCATGGCTTCACTTATGTAAGTTCAACTCTTATATTCTATGATATTTATGTGTTAGAGGCTTGCTTAAGTTGTTAAAACAACTATGTTTTGGGAGAAAAAGTAGTCTTTTGGCAGGACATCTCAGATTCCGGGAAATGAGTTAAAGTCAAGTCAAAGTGTTACTTGGTCGTTGTTCGTTCTAAAATCTCAAAAGGGTCTGTTGATTCGGAATCACGGAATGAGTAGATGTAACTGATCATTATAATCCATTTTGTTTAAGTTTTTATAGCTTTACCTTTTTGTGGTAGTTATATTTAGCTGTTAAAAGAGCTGAACCCTTTGGTATAAGATAGCTGAAGTTTTCAATCATATGACAGCCCAAGTATCATGTTCTTCTTTATTTGACCAATTCTTCGTATAAAGTTAATGTCTCATCTCTTTGAGTGCCTTTGAGTTCTTGTTTGGGGTTGGCCTTTGTTTTTTCTTTGAAGAAGCTTTATGAATGAGATCTTTCACAGCAATCTATCAATATCTGTGTATTTATATTTACATTTTTGTTGTTCTTTTCACTCAGGCTCCAATCTTACCTTGCACTTGGGCTCCAAGGAGCTACTGTCCCACAATTTTCTTGTAAAAGCAATAATCTTTAGTGGTTAATTTCAATCCCCTCGGTATCACTCAATTTATGAGCTTGGTTTCGATTATTGTGGATTGAAGTCCTTTTTTGTAGTTAGTGTTTGGATTCTTTTTCATATGCACTTGTACGTTCTTTTATATTTCTCTAAACTTGGTTTTTGTATTAAAAGATCACATTGATATCAAGCAATGGCATATTCTGATGGTAGAGCTTTAATATCAGGTTAGGTTATTAGTTGGCAACCGGTAAGGTCGATTATGCTGGTTTATTTGGGAGAAAACGTTGTAGTTTTCTCGAACTCGGTGGTGCGTTCAATTGGGACATGTTGCTTCATTGTTTGCGTTCTTATGTTCTGGGTTCTCCTTTTACCTTTGTTGAAGTTTTGTAGGTTTTGGCTATTGAAAGTTAAAGTTGTTTCAAGTTGTTTCAAGTTTGGTCACTGTCATTATTTGAGCATTATTTGTTTGAAGGATGGATGTTTGTTGTTTGCTAGGGAAGATTAAAGTATTCTGACAAACTGAACTGTTTTATAATCAGTTGAAACGAGTTTGATCGGTTGGTTTATATGTTTTTTCTGTTGGGTCTGTAGCAAAACTTTCAGGTCGGTTGGCGAGCAAGCTCAAGAATGGCTCAAATGGGACCAAATCAACCAAATATATGCAGCGTTGTTGCAGCAGAGCTCCTTTGACAGTTGGTGTTAGTTCGAGCTTAAAATTGATATCAACCGATGGATAAATCATCTAAATCAGTAATGTTGTACAAAGCCTTGCAAAAATGTTATAATAACACTTACAAAAATGTAAGTTATGAAGTGTTGTAGCTCAGCTTTACTTGGTCTTGTAGTTGCTTTGATCCATTTCTTGCTATATTGTAACATGAACATGACTTCCCCCTACTGTCCTACTGTTTGTAACTTGTTTCTAAACCCATCAATGGGCTCTAAACTCATGATTTGGACTGAGAGCTGGAAGATGAACTTTATTCTTCTTAACTTGTAACTTGCTTTTGACAATTTTCTTCAACTAAAGTTCTTGCACCATTGATTCT

mRNA sequence

TTAGAATCACCTACTTCCGCAACATTGTTCTCATCTTCTTTCATCCAATCATAAACGCCCACGTACTCGAGAGCAAATAAATCCGTCCGTAGCAGATCGTCAAGAATACAAAATTAGCCAGTATAAATAAAGCAAACGCCATTGATGGGTTCACCGGAGCTAGGGTTTCTCCCCCGAATTCTCTCCTCTTCTTGATCGAAGGTTTCTCCTCACAAATCGGCACGTATTCTCTCAATCAACAGATTTTAAAAAAGCGTCGATTTGGCTTTGATTTGATTTGCTTTACCCAGAAAGGGAGGAAAAAAGGGAAAAAACAGCAACAATCGATCAGCCATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCTAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGCGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGGTTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGTAGCTTCAAGAAGTGAAATAAATCCGGATTTCATGATGATGATTAGGGTGGGTGGGCTCAATTCTATGNTTGTTGTGGGAGATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTGCTGATGGAAAGTGGTTTTTAACTTGTAAGGTGTTTGAGTAAAACATATTTGATGTCCTTGGAGCTGCAGTCTCCCTTCTTGAGCTTCTTGCAATTATGTATATGTCATAAAAACATGATCATGGTTGTTATGAAAGTAGATTACTGGGGAATGATTAAGAGTTGACCCAGCTCTGAAGGAGGAATTTCGTAAATCCAATCGTCTCTGTGGTCGTCATGGCTTCACTTATGACATCTCAGATTCCGGGAAATGAGTTAAAGTCAAGTCAAAGTGTTACTTGGTCGTTGTTCGTTCTAAAATCTCAAAAGGGTCTGTTGATTCGGAATCACGGAATGAGTAGATCAAAACTTTCAGGTCGGTTGGCGAGCAAGCTCAAGAATGGCTCAAATGGGACCAAATCAACCAAATATATGCAGCGTTGTTGCAGCAGAGCTCCTTTGACAGTTGGTGTTAGTTCGAGCTTAAAATTGATATCAACCGATGGATAAATCATCTAAATCAGTAATGTTGTACAAAGCCTTGCAAAAATGTTATAATAACACTTACAAAAATGTAAGTTATGAAGTGTTGTAGCTCAGCTTTACTTGGTCTTGTAGTTGCTTTGATCCATTTCTTGCTATATTGTAACATGAACATGACTTCCCCCTACTGTCCTACTGTTTGTAACTTGTTTCTAAACCCATCAATGGGCTCTAAACTCATGATTTGGACTGAGAGCTGGAAGATGAACTTTATTCTTCTTAACTTGTAACTTGCTTTTGACAATTTTCTTCAACTAAAGTTCTTGCACCATTGATTCT

Coding sequence (CDS)

ATGGCTTCACTTATGACATCTCAGATTCCGGGAAATGAGTTAAAGTCAAGTCAAAGTGTTACTTGGTCGTTGTTCGTTCTAAAATCTCAAAAGGGTCTGTTGATTCGGAATCACGGAATGAGTAGATCAAAACTTTCAGGTCGGTTGGCGAGCAAGCTCAAGAATGGCTCAAATGGGACCAAATCAACCAAATATATGCAGCGTTGTTGCAGCAGAGCTCCTTTGACAGTTGGTGTTAGTTCGAGCTTAAAATTGATATCAACCGATGGATAA

Protein sequence

MASLMTSQIPGNELKSSQSVTWSLFVLKSQKGLLIRNHGMSRSKLSGRLASKLKNGSNGTKSTKYMQRCCSRAPLTVGVSSSLKLISTDG
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..64

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG18g02580Cp4.1LG18g02580gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02580.1:three_prime_utr:001Cp4.1LG18g02580.1:three_prime_utr:001three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02580.1:exon:004Cp4.1LG18g02580.1:exon:004exon
Cp4.1LG18g02580.1:exon:003Cp4.1LG18g02580.1:exon:003exon
Cp4.1LG18g02580.1:exon:002Cp4.1LG18g02580.1:exon:002exon
Cp4.1LG18g02580.1:exon:001Cp4.1LG18g02580.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02580.1:cds:001Cp4.1LG18g02580.1:cds:001CDS
Cp4.1LG18g02580.1:cds:002Cp4.1LG18g02580.1:cds:002CDS
Cp4.1LG18g02580.1:cds:003Cp4.1LG18g02580.1:cds:003CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02580.1:five_prime_utr:001Cp4.1LG18g02580.1:five_prime_utr:001five_prime_UTR
Cp4.1LG18g02580.1:five_prime_utr:002Cp4.1LG18g02580.1:five_prime_utr:002five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02580.1Cp4.1LG18g02580.1-proteinpolypeptide