Cp4.1LG18g02580 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG18g02580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG18: 4206517 .. 4209317 (-)
RNA-Seq Expression	Cp4.1LG18g02580
Synteny	Cp4.1LG18g02580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAATCACCTACTTCCGCAACATTGTTCTCATCTTCTTTCATCCAATCATAAACGCCCACGTACTCGAGAGCAAATAAATCCGTCCGTAGCAGATCGTCAAGAATACAAAATTAGCCAGTATAAATAAAGCAAACGCCATTGATGGGTTCACCGGAGCTAGGGTTTCTCCCCCGAATTCTCTCCTCTTCTTGATCGAAGGTTTCTCCTCACAAATCGGCACGTATTCTCTCAATCAACAGATTTTAAAAAAGCGTCGATTTGGCTTTGATTTGATTTGCTTTACCCAGAAAGGGAGGAAAAAAGGGAAAAAACAGCAACAATCGATCAGCCATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCTAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGCGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGGTTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGTAGCTTCAAGAAGTGAAATAAATCCGGATTTCATGATGATGATTAGGGTGGGTGGGCTCAATTCTATGNTTGTTGTGGGAGATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTGCTGATGGAAAGTGGTTTTTAACTTGTAAGGTGTTTGAGTAAAACATATTTGATGTCCTTGGAGCTGCAGTCTCCCTTCTTGAGCTTCTTGCAATTATGTATATGTCATAAAAACATGATCATGGTTGTTATGGTAATGATGGAGGTGTTTCATGTTCTTATTTCCGTGCTTATCATGTCATATGTTTAATTTTAGTTAGATTAGAGTGAGCTTAAGGTGTTGCTGGAATGTTGCAGGCTTAAGCTGTTTATGACTTGAGAATATGTTGTGTGATTTTTATTGTTATTTTGATATTTAGAAAGTAGATTACTGGGGAATGATTAAGAGTTGACCCAGCTCTGAAGGAGGAATTTCGTAAATCCAATCGTCTCTGTGGTCGTCATGGCTTCACTTATGTAAGTTCAACTCTTATATTCTATGATATTTATGTGTTAGAGGCTTGCTTAAGTTGTTAAAACAACTATGTTTTGGGAGAAAAAGTAGTCTTTTGGCAGGACATCTCAGATTCCGGGAAATGAGTTAAAGTCAAGTCAAAGTGTTACTTGGTCGTTGTTCGTTCTAAAATCTCAAAAGGGTCTGTTGATTCGGAATCACGGAATGAGTAGATGTAACTGATCATTATAATCCATTTTGTTTAAGTTTTTATAGCTTTACCTTTTTGTGGTAGTTATATTTAGCTGTTAAAAGAGCTGAACCCTTTGGTATAAGATAGCTGAAGTTTTCAATCATATGACAGCCCAAGTATCATGTTCTTCTTTATTTGACCAATTCTTCGTATAAAGTTAATGTCTCATCTCTTTGAGTGCCTTTGAGTTCTTGTTTGGGGTTGGCCTTTGTTTTTTCTTTGAAGAAGCTTTATGAATGAGATCTTTCACAGCAATCTATCAATATCTGTGTATTTATATTTACATTTTTGTTGTTCTTTTCACTCAGGCTCCAATCTTACCTTGCACTTGGGCTCCAAGGAGCTACTGTCCCACAATTTTCTTGTAAAAGCAATAATCTTTAGTGGTTAATTTCAATCCCCTCGGTATCACTCAATTTATGAGCTTGGTTTCGATTATTGTGGATTGAAGTCCTTTTTTGTAGTTAGTGTTTGGATTCTTTTTCATATGCACTTGTACGTTCTTTTATATTTCTCTAAACTTGGTTTTTGTATTAAAAGATCACATTGATATCAAGCAATGGCATATTCTGATGGTAGAGCTTTAATATCAGGTTAGGTTATTAGTTGGCAACCGGTAAGGTCGATTATGCTGGTTTATTTGGGAGAAAACGTTGTAGTTTTCTCGAACTCGGTGGTGCGTTCAATTGGGACATGTTGCTTCATTGTTTGCGTTCTTATGTTCTGGGTTCTCCTTTTACCTTTGTTGAAGTTTTGTAGGTTTTGGCTATTGAAAGTTAAAGTTGTTTCAAGTTGTTTCAAGTTTGGTCACTGTCATTATTTGAGCATTATTTGTTTGAAGGATGGATGTTTGTTGTTTGCTAGGGAAGATTAAAGTATTCTGACAAACTGAACTGTTTTATAATCAGTTGAAACGAGTTTGATCGGTTGGTTTATATGTTTTTTCTGTTGGGTCTGTAGCAAAACTTTCAGGTCGGTTGGCGAGCAAGCTCAAGAATGGCTCAAATGGGACCAAATCAACCAAATATATGCAGCGTTGTTGCAGCAGAGCTCCTTTGACAGTTGGTGTTAGTTCGAGCTTAAAATTGATATCAACCGATGGATAAATCATCTAAATCAGTAATGTTGTACAAAGCCTTGCAAAAATGTTATAATAACACTTACAAAAATGTAAGTTATGAAGTGTTGTAGCTCAGCTTTACTTGGTCTTGTAGTTGCTTTGATCCATTTCTTGCTATATTGTAACATGAACATGACTTCCCCCTACTGTCCTACTGTTTGTAACTTGTTTCTAAACCCATCAATGGGCTCTAAACTCATGATTTGGACTGAGAGCTGGAAGATGAACTTTATTCTTCTTAACTTGTAACTTGCTTTTGACAATTTTCTTCAACTAAAGTTCTTGCACCATTGATTCT

mRNA sequence

TTAGAATCACCTACTTCCGCAACATTGTTCTCATCTTCTTTCATCCAATCATAAACGCCCACGTACTCGAGAGCAAATAAATCCGTCCGTAGCAGATCGTCAAGAATACAAAATTAGCCAGTATAAATAAAGCAAACGCCATTGATGGGTTCACCGGAGCTAGGGTTTCTCCCCCGAATTCTCTCCTCTTCTTGATCGAAGGTTTCTCCTCACAAATCGGCACGTATTCTCTCAATCAACAGATTTTAAAAAAGCGTCGATTTGGCTTTGATTTGATTTGCTTTACCCAGAAAGGGAGGAAAAAAGGGAAAAAACAGCAACAATCGATCAGCCATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCTAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGCGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGGTTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGTAGCTTCAAGAAGTGAAATAAATCCGGATTTCATGATGATGATTAGGGTGGGTGGGCTCAATTCTATGNTTGTTGTGGGAGATGGATTTGAGGGATTGGAAGTGGGCGTTGGTTGGGTTGGTGCTGATGGAAAGTGGTTTTTAACTTGTAAGGTGTTTGAGTAAAACATATTTGATGTCCTTGGAGCTGCAGTCTCCCTTCTTGAGCTTCTTGCAATTATGTATATGTCATAAAAACATGATCATGGTTGTTATGAAAGTAGATTACTGGGGAATGATTAAGAGTTGACCCAGCTCTGAAGGAGGAATTTCGTAAATCCAATCGTCTCTGTGGTCGTCATGGCTTCACTTATGACATCTCAGATTCCGGGAAATGAGTTAAAGTCAAGTCAAAGTGTTACTTGGTCGTTGTTCGTTCTAAAATCTCAAAAGGGTCTGTTGATTCGGAATCACGGAATGAGTAGATCAAAACTTTCAGGTCGGTTGGCGAGCAAGCTCAAGAATGGCTCAAATGGGACCAAATCAACCAAATATATGCAGCGTTGTTGCAGCAGAGCTCCTTTGACAGTTGGTGTTAGTTCGAGCTTAAAATTGATATCAACCGATGGATAAATCATCTAAATCAGTAATGTTGTACAAAGCCTTGCAAAAATGTTATAATAACACTTACAAAAATGTAAGTTATGAAGTGTTGTAGCTCAGCTTTACTTGGTCTTGTAGTTGCTTTGATCCATTTCTTGCTATATTGTAACATGAACATGACTTCCCCCTACTGTCCTACTGTTTGTAACTTGTTTCTAAACCCATCAATGGGCTCTAAACTCATGATTTGGACTGAGAGCTGGAAGATGAACTTTATTCTTCTTAACTTGTAACTTGCTTTTGACAATTTTCTTCAACTAAAGTTCTTGCACCATTGATTCT

Coding sequence (CDS)

ATGGCTTCACTTATGACATCTCAGATTCCGGGAAATGAGTTAAAGTCAAGTCAAAGTGTTACTTGGTCGTTGTTCGTTCTAAAATCTCAAAAGGGTCTGTTGATTCGGAATCACGGAATGAGTAGATCAAAACTTTCAGGTCGGTTGGCGAGCAAGCTCAAGAATGGCTCAAATGGGACCAAATCAACCAAATATATGCAGCGTTGTTGCAGCAGAGCTCCTTTGACAGTTGGTGTTAGTTCGAGCTTAAAATTGATATCAACCGATGGATAA

Protein sequence

MASLMTSQIPGNELKSSQSVTWSLFVLKSQKGLLIRNHGMSRSKLSGRLASKLKNGSNGTKSTKYMQRCCSRAPLTVGVSSSLKLISTDG

Homology

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g02580 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g02580 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g02580 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g02580 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g02580.1	Cp4.1LG18g02580.1	mRNA