Cp4.1LG17g09510.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g09510.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	40S ribosomal protein S27
Location	Cp4.1LG17: 7270571 .. 7272002 (+)
Sequence length	1132
RNA-Seq Expression	Cp4.1LG17g09510.1
Synteny	Cp4.1LG17g09510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCTTTTGACAGGGAAGAACATTTTACTTAAATTTGTGAATGGACGGTTATACCCTTCAGTTCATGGCCATGCGTAGCCCTAGGCACTTCAGAGACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCAAAATTTCCAGCTGCTCCCTTATATTCTTACTAGACGGCGCTATATCGCTTTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTAAACTTCCTGCTACATTCGATTATGCCTTTTTTTCTCTTCTGAATTTGGATCCAACAATTTTCACTTTCTTTCACGCTATTTTCAGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTTTGCTCTTTCGTTTAAATTCTTTTTGCTTTGTTTGATCTAATAATCTTTTCTCCGACAATGGTGATCGAGCTGTTTTGTGATTTCTGTGGGCAGGACGTGAAGTGCCAGGGTTGCTTTAACATGTAAGTTTTCATCTTTTCTCATGTATTATGGTTATGTGACCTTTCTTTTTTCTGCAAGTTGTTGAAGTTGGGTTCTTAAGTGAGTAATGGCACATAACTCTTTGAATGAATAACAGAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAATTCCTTGGCCCCAGAATTGGCTTTTAGTAGGATCAGGATGGATGGGTTTGAATTTTGATATTGCAATTGAGCACAATTTTTCTTTGTCTCGGGTTTTCTACGTTTTGCATGTTGATTATTCAATTTTGCTTGAGAAGAGGAGCATTTTGTCCCCGTTGTTGCAGTACGTTAATTTTCATGTTTTCAATGAAACTAAACTTTGTTTGAAGTAATTCACACATCAGTTGTATTGCGTGTTATCCAGTACTTCTTTAATTGATCGAACTGTTTTGATTTGGCTGCCATTATTCCACGAGTTATGAACTTAGATCCTATTTTCTGATGCTTTTAGTGTTGGAAATATTGGATTGATATTTGTTATTTATCAGATAGTTAATTCAAAGTCATCGGGAATTCTTGTTTTTATCTCAATGTCAGGGAGTGGTTGTCTATTTGTTCCCCTTGATCCTTATTTTCAATTGTTCTTATCGTCTTTTTCTGGTGTGCTTGTCGTTTTTGTACTACTAAGTAGCATCCATCGAACGAGTGTCGCAGAGAATGTTTGATACTATATTCTGACATATTTTTGGTCCTGTGGTCTAATGTTTGG

mRNA sequence

AATTTTCTTTTGACAGGGAAGAACATTTTACTTAAATTTGTGAATGGACGGTTATACCCTTCAGTTCATGGCCATGCGTAGCCCTAGGCACTTCAGAGACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCAAAATTTCCAGCTGCTCCCTTATATTCTTACTAGACGGCGCTATATCGCTTTTTTATAACGTTCATTGCACCGCCCTGATTCTTTCGCGAACTCTCGTTGGGATTCTAGGGTTCGCGATCCAGACAGTTCCTTACTGATCAACATGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAATTCCTTGGCCCCAGAATTGGCTTTTAGTAGGATCAGGATGGATGGGTTTGAATTTTGATATTGCAATTGAGCACAATTTTTCTTTGTCTCGGGTTTTCTACGTTTTGCATGTTGATTATTCAATTTTGCTTGAGAAGAGGAGCATTTTGTCCCCGTTGTTGCAGTACGTTAATTTTCATGTTTTCAATGAAACTAAACTTTGTTTGAAGTAATTCACACATCAGTTGTATTGCGTGTTATCCAGTACTTCTTTAATTGATCGAACTGTTTTGATTTGGCTGCCATTATTCCACGAGTTATGAACTTAGATCCTATTTTCTGATGCTTTTAGTGTTGGAAATATTGGATTGATATTTGTTATTTATCAGATAGTTAATTCAAAGTCATCGGGAATTCTTGTTTTTATCTCAATGTCAGGGAGTGGTTGTCTATTTGTTCCCCTTGATCCTTATTTTCAATTGTTCTTATCGTCTTTTTCTGGTGTGCTTGTCGTTTTTGTACTACTAAGTAGCATCCATCGAACGAGTGTCGCAGAGAATGTTTGATACTATATTCTGACATATTTTTGGTCCTGTGGTCTAATGTTTGG

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATTGATTTGCTTAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAGACAGTCGTGGTATGTGGGAATTGCCAGTCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGCTGCTCCTTCAGAAGAAAGGGTGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 4.7e-44
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.9e-41
Identity = 77/84 (91.67%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ++LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ+VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-37
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          C SVLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. NCBI nr
Match: XP_022960233.1 (40S ribosomal protein S27-2-like [Cucurbita moschata] >XP_023004242.1 40S ribosomal protein S27-2-like [Cucurbita maxima] >XP_023513990.1 40S ribosomal protein S27-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181 bits (460), Expect = 1.10e-57
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. NCBI nr
Match: XP_006446889.1 (40S ribosomal protein S27-2 [Citrus clementina] >XP_006446892.1 40S ribosomal protein S27-2 [Citrus clementina] >XP_006468930.1 40S ribosomal protein S27-2 [Citrus sinensis] >XP_006468931.1 40S ribosomal protein S27-2 [Citrus sinensis] >GAY61583.1 hypothetical protein CUMW_211090 [Citrus unshiu] >ESR60129.1 hypothetical protein CICLE_v10017335mg [Citrus clementina] >ESR60132.1 hypothetical protein CICLE_v10017332mg [Citrus clementina] >GAY65076.1 hypothetical protein CUMW_238430 [Citrus unshiu] >GAY65077.1 hypothetical protein CUMW_238430 [Citrus unshiu])

HSP 1 Score: 180 bits (457), Expect = 3.15e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. NCBI nr
Match: XP_002512685.1 (40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal protein S27-2 [Ricinus communis] >XP_004143769.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_008465377.1 PREDICTED: 40S ribosomal protein S27-2-like [Cucumis melo] >XP_010028919.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_010057712.1 40S ribosomal protein S27-2 [Eucalyptus grandis] >XP_012078870.1 40S ribosomal protein S27-2 [Jatropha curcas] >XP_018829355.1 40S ribosomal protein S27-2 [Juglans regia] >XP_021660002.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_021680473.1 40S ribosomal protein S27-2 [Hevea brasiliensis] >XP_022141357.1 40S ribosomal protein S27-2 [Momordica charantia] >XP_022939288.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022952540.1 40S ribosomal protein S27-2 [Cucurbita moschata] >XP_022990942.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_022993712.1 40S ribosomal protein S27-2 [Cucurbita maxima] >XP_023524061.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023548719.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023549571.1 40S ribosomal protein S27-2 [Cucurbita pepo subsp. pepo] >XP_023872417.1 40S ribosomal protein S27-2 [Quercus suber] >XP_030450730.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030452017.1 40S ribosomal protein S27-2 [Syzygium oleosum] >XP_030513362.1 40S ribosomal protein S27-2 [Rhodamnia argentea] >XP_030956657.1 40S ribosomal protein S27-2 [Quercus lobata] >XP_031276672.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_031276714.1 40S ribosomal protein S27-2 [Pistacia vera] >XP_038906694.1 40S ribosomal protein S27-2-like [Benincasa hispida] >XP_041012643.1 40S ribosomal protein S27-2 [Juglans microcarpa x Juglans regia] >XP_042982589.1 40S ribosomal protein S27-2 [Carya illinoinensis] >KAA0066103.1 Ribosomal protein S27e [Cucumis melo var. makuwa] >KAF3943728.1 hypothetical protein CMV_029739 [Castanea mollissima] >KAF8013305.1 hypothetical protein BT93_I1220 [Corymbia citriodora subsp. variegata] >KAG6579093.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014613.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 3.15e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. NCBI nr
Match: XP_020587178.1 (40S ribosomal protein S27-2-like [Phalaenopsis equestris])

HSP 1 Score: 180 bits (457), Expect = 3.15e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. NCBI nr
Match: XP_031384267.1 (40S ribosomal protein S27-2 [Punica granatum])

HSP 1 Score: 180 bits (456), Expect = 4.47e-57
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQND+DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDVDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy TrEMBL
Match: A0A6J1KPW3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111497636 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 5.31e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy TrEMBL
Match: A0A6J1H892 (40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111461035 PE=3 SV=1)

HSP 1 Score: 181 bits (460), Expect = 5.31e-58
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.52e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy TrEMBL
Match: A0A2H5QKC8 (40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_211090 PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.52e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy TrEMBL
Match: V4W2J8 (40S ribosomal protein S27 OS=Citrus clementina OX=85681 GN=CICLE_v10017332mg PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.52e-57
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86
          CQSVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 177.9 bits (450), Expect = 3.4e-45
Identity = 82/86 (95.35%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cp4.1LG17g09510.1 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.9 bits (424), Expect = 3.5e-42
Identity = 77/84 (91.67%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ++LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cp4.1LG17g09510.1 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 167.5 bits (423), Expect = 4.6e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRK 85
          CQ+VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

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BLAST of Cp4.1LG17g09510.1 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 150.6 bits (379), Expect = 5.8e-37
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09510.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	4.7e-44	95.35	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
Q96564	2.2e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
O64650	4.9e-41	91.67	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q8L953	6.4e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	1.9e-37	86.05	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of Cp4.1LG17g09510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960233.1	1.10e-57	100.00	40S ribosomal protein S27-2-like [Cucurbita moschata] >XP_023004242.1 40S riboso...	[more]
XP_006446889.1	3.15e-57	98.84	40S ribosomal protein S27-2 [Citrus clementina] >XP_006446892.1 40S ribosomal pr...	[more]
XP_002512685.1	3.15e-57	98.84	40S ribosomal protein S27-2 [Ricinus communis] >XP_002519401.1 40S ribosomal pro...	[more]
XP_020587178.1	3.15e-57	98.84	40S ribosomal protein S27-2-like [Phalaenopsis equestris]	[more]
XP_031384267.1	4.47e-57	97.67	40S ribosomal protein S27-2 [Punica granatum]	[more]

BLAST of Cp4.1LG17g09510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KPW3	5.31e-58	100.00	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111497636 PE=3 SV=1	[more]
A0A6J1H892	5.31e-58	100.00	40S ribosomal protein S27 OS=Cucurbita moschata OX=3662 GN=LOC111461035 PE=3 SV=...	[more]
A0A6J1JTM3	1.52e-57	98.84	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1	[more]
A0A2H5QKC8	1.52e-57	98.84	40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_211090 PE=3 SV=1	[more]
V4W2J8	1.52e-57	98.84	40S ribosomal protein S27 OS=Citrus clementina OX=85681 GN=CICLE_v10017332mg PE=...	[more]

BLAST of Cp4.1LG17g09510.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	3.4e-45	95.35	ribosomal protein S27	[more]
AT2G45710.1	3.5e-42	91.67	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	4.6e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	5.8e-37	81.40	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 5..85 e-value: 5.0E-49 score: 166.2
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 e-value: 2.4E-27 score: 94.4
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 2..85
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16.715874
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 2..85
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 30..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g09510	Cp4.1LG17g09510	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09510.1:five_prime_utr:001	Cp4.1LG17g09510.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09510.1:exon:001	Cp4.1LG17g09510.1:exon:001	exon
Cp4.1LG17g09510.1:exon:002	Cp4.1LG17g09510.1:exon:002	exon
Cp4.1LG17g09510.1:exon:003	Cp4.1LG17g09510.1:exon:003	exon
Cp4.1LG17g09510.1:exon:004	Cp4.1LG17g09510.1:exon:004	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09510.1:cds:001	Cp4.1LG17g09510.1:cds:001	CDS
Cp4.1LG17g09510.1:cds:002	Cp4.1LG17g09510.1:cds:002	CDS
Cp4.1LG17g09510.1:cds:003	Cp4.1LG17g09510.1:cds:003	CDS
Cp4.1LG17g09510.1:cds:004	Cp4.1LG17g09510.1:cds:004	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09510.1:three_prime_utr:001	Cp4.1LG17g09510.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09510.1	Cp4.1LG17g09510.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding