Cp4.1LG16g04920.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG16g04920.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG16: 5982870 .. 5984959 (-)
Sequence length1389
RNA-Seq ExpressionCp4.1LG16g04920.1
SyntenyCp4.1LG16g04920.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACCAATCTAAGTCACCCCAGATGGTCTCACCACCCTTCGGTAACAACGACGCGGTTGAATCCCAGGTCCGGGAAACCCGCAACATGTGTTCTAAGGTTTGAAATCCAAGAATTTCAGATTTAAGAAAACCAGGGGTCATAGCTCTGTAAATGCCAAGATAATCAATCAAGTTCATTATTTTTCCTTGAACCTCTAAGGGTGAAGAAGAGAAGAGAATAGAACCTGAGCAAAGCAATGTGTCTGTCTTCAGCAGAAAGAATTTTACTGACTGCCTTTGGAGTTCCCAAAAATGTAGAGCCAATATTCATGATTGCTTTAATATACTTGGCACACCACCCTTGGCCGCCACCGCCTCCCATCGGCGGCGGCGCTTCCACCCACTTCATGAAATGGAGGAAGTACAGAACCCCCATTGAGTGAGGCACCACCACCACTTTATTCCCACCATTTGTTTCATACATTACCTCTATTTTACTCTTCAATCTGCTCAGAGCCCTGTCTCTAACCTGCGTGATTTCTCAACTCAACTATTGCAAACTCAATGATCAAATGTATAATTTGATTGGAAGAAGAAGAGAGTGTTGTTGGTCACATTGCATACCTCTGTGTTTTGGAAGGCGATCCTCCAATCATATGCAGCCATATGTAAGTTCTTTCCATCATAACCAATTTTAGCCAGATTTTCTATGAGAACAGCCCAAACGAAGTAGCCATGGGTGAAATAATCAGCGGCCACAAGGCCTTCGACTGGCCGGATTCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCCAGAGACAGGTGCTCCAACCAGCATAATGGTCTGGAAGTTTGAATTCAAATTCTCAAATGGGTACACTTCAAGTATCAATCCAAAAGCTTCAGAAATGTAAAATTCATCTGGAATTCGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAACAGTCCCTTGGCGCAGGGCTTGCCATCCCAGAGCTCCAGCCCGCCGGTGACAATGCCGGGCACTAAAACGACTGGGTGAAGACCTGATACGCCATCTCTCTTTAAAACAGTCCCCGGAGAGTCAATCGCTGGAAAGCCAGGTAATGTAAGAGGCAAATAATGGTAGACGAAAAACATCAGCCACCAAAATGTACACATATATCCAATAATCCAACAGCAGTTATCTAAGCACTTCCATTCTCTTGATTGCCCCTTATTGATGTTCTTGTTCCTTTTCTTCTTCCTGTCATTATCTTGCTTCTTTTGCAGCATTTTCTTCACATATGCAACAACAACATTAGGTTTATCCTCTGATTTATGTGCATCATCAATGGATTGGATCCCCATGGAAGAATTCTTAACAGGGTTGACGTAGTATAATTTGCGGAGACGAAGAACAGAGGCCATGGGTTAAGGAGTGAAGAAGTTGAGATCAAGAAAATCAAAGAAGAACGAGGAGAACCCATGACTTAGGGGGGATTTTAAAACAGAAAAAAGTTAAAACAAGCTGTCAAGAAAGCAATACACGTGGTGAAACGAAAGGGACAAGAGGGAGTAAATGGCCTGGTGGCCATGGGTAGCTGAAGGTGTGCAGTCGGAACAAAACAGGGGATGTGAAAGGAAAGAGAAAAGGAAGAGGCTTCTCTTGTGCAACTCATTATGAGAATGAAAAAGGAAAAGGGTTGTGCGAATTGCTGAGGAGATGGGAATGGAGAATCCAAAGTAACACATTTTGTATCATCAAAATGACACTTAGCTCTGTTTCTGCATGGGAGCTTCGTCAGGTGTCGTCCCCTCTGGGCCTCTGTCTTCACTACATATTATAGCTTTTGAATAACACTCTTTTTCGATTGTTTATCGCTAATGTGTCAATGGGAAGGAACTTGCTTTCTTTTCTTTTTAAGTTTTTGGTATATTTATGTGGACGTTAAAAGCTATACAAGCTAACAAACAGGGCTGAGAATAAATGGGTAAGACAGGGTCGATTGGAAGATTCTCATGGTCCTGGGCTTCTCATATGAAGCTCAATACACTATCCTCACACTCCATTGAGCCTAGGGCCCAAATATACCAGCCTTGTCTCA

mRNA sequence

GAGACCAATCTAAGTCACCCCAGATGGTCTCACCACCCTTCGGTAACAACGACGCGGTTGAATCCCAGGTCCGGGAAACCCGCAACATGTGTTCTAAGGGTGAAGAAGAGAAGAGAATAGAACCTGAGCAAAGCAATGTGTCTGTCTTCAGCAGAAAGAATTTTACTGACTGCCTTTGGAGTTCCCAAAAATGTAGAGCCAATATTCATGATTGCTTTAATATACTTGGCACACCACCCTTGGCCGCCACCGCCTCCCATCGGCGGCGGCGCTTCCACCCACTTCATGAAATGGAGGAAATTTTCTATGAGAACAGCCCAAACGAAGTAGCCATGGGTGAAATAATCAGCGGCCACAAGGCCTTCGACTGGCCGGATTCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCCAGAGACAGAAATGTAAAATTCATCTGGAATTCGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAACAGTCCCTTGGCGCAGGGCTTGCCATCCCAGAGCTCCAGCCCGCCGGTGACAATGCCGGGCACTAAAACGACTGGCATTTTCTTCACATATGCAACAACAACATTAGGTTTATCCTCTGATTTATGTGCATCATCAATGGATTGGATCCCCATGGAAGAATTCTTAACAGGGTTGACGTAGTATAATTTGCGGAGACGAAGAACAGAGGCCATGGGTTAAGGAGTGAAGAAGTTGAGATCAAGAAAATCAAAGAAGAACGAGGAGAACCCATGACTTAGGGGGGATTTTAAAACAGAAAAAAGTTAAAACAAGCTGTCAAGAAAGCAATACACGTGGTGAAACGAAAGGGACAAGAGGGAGTAAATGGCCTGGTGGCCATGGGTAGCTGAAGGTGTGCAGTCGGAACAAAACAGGGGATGTGAAAGGAAAGAGAAAAGGAAGAGGCTTCTCTTGTGCAACTCATTATGAGAATGAAAAAGGAAAAGGGTTGTGCGAATTGCTGAGGAGATGGGAATGGAGAATCCAAAGTAACACATTTTGTATCATCAAAATGACACTTAGCTCTGTTTCTGCATGGGAGCTTCGTCAGGTGTCGTCCCCTCTGGGCCTCTGTCTTCACTACATATTATAGCTTTTGAATAACACTCTTTTTCGATTGTTTATCGCTAATGTGTCAATGGGAAGGAACTTGCTTTCTTTTCTTTTTAAGTTTTTGGTATATTTATGTGGACGTTAAAAGCTATACAAGCTAACAAACAGGGCTGAGAATAAATGGGTAAGACAGGGTCGATTGGAAGATTCTCATGGTCCTGGGCTTCTCATATGAAGCTCAATACACTATCCTCACACTCCATTGAGCCTAGGGCCCAAATATACCAGCCTTGTCTCA

Coding sequence (CDS)

ATGGTCTCACCACCCTTCGGTAACAACGACGCGGTTGAATCCCAGGTCCGGGAAACCCGCAACATGTGTTCTAAGGGTGAAGAAGAGAAGAGAATAGAACCTGAGCAAAGCAATGTGTCTGTCTTCAGCAGAAAGAATTTTACTGACTGCCTTTGGAGTTCCCAAAAATGTAGAGCCAATATTCATGATTGCTTTAATATACTTGGCACACCACCCTTGGCCGCCACCGCCTCCCATCGGCGGCGGCGCTTCCACCCACTTCATGAAATGGAGGAAATTTTCTATGAGAACAGCCCAAACGAAGTAGCCATGGGTGAAATAATCAGCGGCCACAAGGCCTTCGACTGGCCGGATTCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCCAGAGACAGAAATGTAAAATTCATCTGGAATTCGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAACAGTCCCTTGGCGCAGGGCTTGCCATCCCAGAGCTCCAGCCCGCCGGTGACAATGCCGGGCACTAAAACGACTGGCATTTTCTTCACATATGCAACAACAACATTAGGTTTATCCTCTGATTTATGTGCATCATCAATGGATTGGATCCCCATGGAAGAATTCTTAACAGGGTTGACGTAG

Protein sequence

MVSPPFGNNDAVESQVRETRNMCSKGEEEKRIEPEQSNVSVFSRKNFTDCLWSSQKCRANIHDCFNILGTPPLAATASHRRRRFHPLHEMEEIFYENSPNEVAMGEIISGHKAFDWPDSNAWWVKPCFIVQRQKCKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTTLGLSSDLCASSMDWIPMEEFLTGLT
Homology
[Close]
BLAST of Cp4.1LG16g04920.1 vs. NCBI nr
Match: KAG7010680.1 (hypothetical protein SDJN02_27475, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162 bits (411), Expect = 6.61e-48
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0 

Query: 134 KCKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTT 193
           +CKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTT
Sbjct: 12  ECKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTT 71

Query: 194 LGLSSDLCASSMDWIPMEEFLTGLT 218
           LGLSSDLCASSM  IP+EEFLTGLT
Sbjct: 72  LGLSSDLCASSMVRIPIEEFLTGLT 96

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g04920.1 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04920.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010680.16.61e-4895.29hypothetical protein SDJN02_27475, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG16g04920.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g04920.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG16g04920Cp4.1LG16g04920gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04920.1:three_prime_utr:001Cp4.1LG16g04920.1:three_prime_utr:001three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04920.1:exon:005Cp4.1LG16g04920.1:exon:005exon
Cp4.1LG16g04920.1:exon:004Cp4.1LG16g04920.1:exon:004exon
Cp4.1LG16g04920.1:exon:003Cp4.1LG16g04920.1:exon:003exon
Cp4.1LG16g04920.1:exon:002Cp4.1LG16g04920.1:exon:002exon
Cp4.1LG16g04920.1:exon:001Cp4.1LG16g04920.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04920.1:cds:001Cp4.1LG16g04920.1:cds:001CDS
Cp4.1LG16g04920.1:cds:002Cp4.1LG16g04920.1:cds:002CDS
Cp4.1LG16g04920.1:cds:003Cp4.1LG16g04920.1:cds:003CDS
Cp4.1LG16g04920.1:cds:004Cp4.1LG16g04920.1:cds:004CDS
Cp4.1LG16g04920.1:cds:005Cp4.1LG16g04920.1:cds:005CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04920.1:five_prime_utr:001Cp4.1LG16g04920.1:five_prime_utr:001five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG16g04920.1Cp4.1LG16g04920.1-proteinpolypeptide