Cp4.1LG16g04920 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g04920
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG16: 5982870 .. 5984959 (-)
RNA-Seq Expression	Cp4.1LG16g04920
Synteny	Cp4.1LG16g04920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACCAATCTAAGTCACCCCAGATGGTCTCACCACCCTTCGGTAACAACGACGCGGTTGAATCCCAGGTCCGGGAAACCCGCAACATGTGTTCTAAGGTTTGAAATCCAAGAATTTCAGATTTAAGAAAACCAGGGGTCATAGCTCTGTAAATGCCAAGATAATCAATCAAGTTCATTATTTTTCCTTGAACCTCTAAGGGTGAAGAAGAGAAGAGAATAGAACCTGAGCAAAGCAATGTGTCTGTCTTCAGCAGAAAGAATTTTACTGACTGCCTTTGGAGTTCCCAAAAATGTAGAGCCAATATTCATGATTGCTTTAATATACTTGGCACACCACCCTTGGCCGCCACCGCCTCCCATCGGCGGCGGCGCTTCCACCCACTTCATGAAATGGAGGAAGTACAGAACCCCCATTGAGTGAGGCACCACCACCACTTTATTCCCACCATTTGTTTCATACATTACCTCTATTTTACTCTTCAATCTGCTCAGAGCCCTGTCTCTAACCTGCGTGATTTCTCAACTCAACTATTGCAAACTCAATGATCAAATGTATAATTTGATTGGAAGAAGAAGAGAGTGTTGTTGGTCACATTGCATACCTCTGTGTTTTGGAAGGCGATCCTCCAATCATATGCAGCCATATGTAAGTTCTTTCCATCATAACCAATTTTAGCCAGATTTTCTATGAGAACAGCCCAAACGAAGTAGCCATGGGTGAAATAATCAGCGGCCACAAGGCCTTCGACTGGCCGGATTCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCCAGAGACAGGTGCTCCAACCAGCATAATGGTCTGGAAGTTTGAATTCAAATTCTCAAATGGGTACACTTCAAGTATCAATCCAAAAGCTTCAGAAATGTAAAATTCATCTGGAATTCGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAACAGTCCCTTGGCGCAGGGCTTGCCATCCCAGAGCTCCAGCCCGCCGGTGACAATGCCGGGCACTAAAACGACTGGGTGAAGACCTGATACGCCATCTCTCTTTAAAACAGTCCCCGGAGAGTCAATCGCTGGAAAGCCAGGTAATGTAAGAGGCAAATAATGGTAGACGAAAAACATCAGCCACCAAAATGTACACATATATCCAATAATCCAACAGCAGTTATCTAAGCACTTCCATTCTCTTGATTGCCCCTTATTGATGTTCTTGTTCCTTTTCTTCTTCCTGTCATTATCTTGCTTCTTTTGCAGCATTTTCTTCACATATGCAACAACAACATTAGGTTTATCCTCTGATTTATGTGCATCATCAATGGATTGGATCCCCATGGAAGAATTCTTAACAGGGTTGACGTAGTATAATTTGCGGAGACGAAGAACAGAGGCCATGGGTTAAGGAGTGAAGAAGTTGAGATCAAGAAAATCAAAGAAGAACGAGGAGAACCCATGACTTAGGGGGGATTTTAAAACAGAAAAAAGTTAAAACAAGCTGTCAAGAAAGCAATACACGTGGTGAAACGAAAGGGACAAGAGGGAGTAAATGGCCTGGTGGCCATGGGTAGCTGAAGGTGTGCAGTCGGAACAAAACAGGGGATGTGAAAGGAAAGAGAAAAGGAAGAGGCTTCTCTTGTGCAACTCATTATGAGAATGAAAAAGGAAAAGGGTTGTGCGAATTGCTGAGGAGATGGGAATGGAGAATCCAAAGTAACACATTTTGTATCATCAAAATGACACTTAGCTCTGTTTCTGCATGGGAGCTTCGTCAGGTGTCGTCCCCTCTGGGCCTCTGTCTTCACTACATATTATAGCTTTTGAATAACACTCTTTTTCGATTGTTTATCGCTAATGTGTCAATGGGAAGGAACTTGCTTTCTTTTCTTTTTAAGTTTTTGGTATATTTATGTGGACGTTAAAAGCTATACAAGCTAACAAACAGGGCTGAGAATAAATGGGTAAGACAGGGTCGATTGGAAGATTCTCATGGTCCTGGGCTTCTCATATGAAGCTCAATACACTATCCTCACACTCCATTGAGCCTAGGGCCCAAATATACCAGCCTTGTCTCA

mRNA sequence

GAGACCAATCTAAGTCACCCCAGATGGTCTCACCACCCTTCGGTAACAACGACGCGGTTGAATCCCAGGTCCGGGAAACCCGCAACATGTGTTCTAAGGGTGAAGAAGAGAAGAGAATAGAACCTGAGCAAAGCAATGTGTCTGTCTTCAGCAGAAAGAATTTTACTGACTGCCTTTGGAGTTCCCAAAAATGTAGAGCCAATATTCATGATTGCTTTAATATACTTGGCACACCACCCTTGGCCGCCACCGCCTCCCATCGGCGGCGGCGCTTCCACCCACTTCATGAAATGGAGGAAATTTTCTATGAGAACAGCCCAAACGAAGTAGCCATGGGTGAAATAATCAGCGGCCACAAGGCCTTCGACTGGCCGGATTCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCCAGAGACAGAAATGTAAAATTCATCTGGAATTCGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAACAGTCCCTTGGCGCAGGGCTTGCCATCCCAGAGCTCCAGCCCGCCGGTGACAATGCCGGGCACTAAAACGACTGGCATTTTCTTCACATATGCAACAACAACATTAGGTTTATCCTCTGATTTATGTGCATCATCAATGGATTGGATCCCCATGGAAGAATTCTTAACAGGGTTGACGTAGTATAATTTGCGGAGACGAAGAACAGAGGCCATGGGTTAAGGAGTGAAGAAGTTGAGATCAAGAAAATCAAAGAAGAACGAGGAGAACCCATGACTTAGGGGGGATTTTAAAACAGAAAAAAGTTAAAACAAGCTGTCAAGAAAGCAATACACGTGGTGAAACGAAAGGGACAAGAGGGAGTAAATGGCCTGGTGGCCATGGGTAGCTGAAGGTGTGCAGTCGGAACAAAACAGGGGATGTGAAAGGAAAGAGAAAAGGAAGAGGCTTCTCTTGTGCAACTCATTATGAGAATGAAAAAGGAAAAGGGTTGTGCGAATTGCTGAGGAGATGGGAATGGAGAATCCAAAGTAACACATTTTGTATCATCAAAATGACACTTAGCTCTGTTTCTGCATGGGAGCTTCGTCAGGTGTCGTCCCCTCTGGGCCTCTGTCTTCACTACATATTATAGCTTTTGAATAACACTCTTTTTCGATTGTTTATCGCTAATGTGTCAATGGGAAGGAACTTGCTTTCTTTTCTTTTTAAGTTTTTGGTATATTTATGTGGACGTTAAAAGCTATACAAGCTAACAAACAGGGCTGAGAATAAATGGGTAAGACAGGGTCGATTGGAAGATTCTCATGGTCCTGGGCTTCTCATATGAAGCTCAATACACTATCCTCACACTCCATTGAGCCTAGGGCCCAAATATACCAGCCTTGTCTCA

Coding sequence (CDS)

ATGGTCTCACCACCCTTCGGTAACAACGACGCGGTTGAATCCCAGGTCCGGGAAACCCGCAACATGTGTTCTAAGGGTGAAGAAGAGAAGAGAATAGAACCTGAGCAAAGCAATGTGTCTGTCTTCAGCAGAAAGAATTTTACTGACTGCCTTTGGAGTTCCCAAAAATGTAGAGCCAATATTCATGATTGCTTTAATATACTTGGCACACCACCCTTGGCCGCCACCGCCTCCCATCGGCGGCGGCGCTTCCACCCACTTCATGAAATGGAGGAAATTTTCTATGAGAACAGCCCAAACGAAGTAGCCATGGGTGAAATAATCAGCGGCCACAAGGCCTTCGACTGGCCGGATTCGAATGCCTGGTGGGTCAAGCCCTGTTTCATTGTCCAGAGACAGAAATGTAAAATTCATCTGGAATTCGCTAACCTTTTCAATGTTTCAGTGAAACTCCCACCCCACAGGCGCTTTCGAAACAGTCCCTTGGCGCAGGGCTTGCCATCCCAGAGCTCCAGCCCGCCGGTGACAATGCCGGGCACTAAAACGACTGGCATTTTCTTCACATATGCAACAACAACATTAGGTTTATCCTCTGATTTATGTGCATCATCAATGGATTGGATCCCCATGGAAGAATTCTTAACAGGGTTGACGTAG

Protein sequence

MVSPPFGNNDAVESQVRETRNMCSKGEEEKRIEPEQSNVSVFSRKNFTDCLWSSQKCRANIHDCFNILGTPPLAATASHRRRRFHPLHEMEEIFYENSPNEVAMGEIISGHKAFDWPDSNAWWVKPCFIVQRQKCKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTTLGLSSDLCASSMDWIPMEEFLTGLT

Homology

[Close]

BLAST of Cp4.1LG16g04920 vs. NCBI nr
Match: KAG7010680.1 (hypothetical protein SDJN02_27475, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162 bits (411), Expect = 6.61e-48
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 134 KCKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTT 193
           +CKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTT
Sbjct: 12  ECKIHLEFANLFNVSVKLPPHRRFRNSPLAQGLPSQSSSPPVTMPGTKTTGIFFTYATTT 71

Query: 194 LGLSSDLCASSMDWIPMEEFLTGLT 218
           LGLSSDLCASSM  IP+EEFLTGLT
Sbjct: 72  LGLSSDLCASSMVRIPIEEFLTGLT 96

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g04920 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g04920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010680.1	6.61e-48	95.29	hypothetical protein SDJN02_27475, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG16g04920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g04920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g04920.1	Cp4.1LG16g04920.1	mRNA