Cp4.1LG16g03140.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g03140.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Transmembrane protein
Location	Cp4.1LG16: 4918726 .. 4919112 (-)
Sequence length	387
RNA-Seq Expression	Cp4.1LG16g03140.1
Synteny	Cp4.1LG16g03140.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTGGTTAGAACCAAAGAGAAGGGGTCCAGAGTGGAAACAGGGGGGATGGACAGGCCAAACCCTAGGCGGCTCTGTTTCCTCTCCACCACCTCAATTGCTCACCATTTTTGGCATTGTCATTGTCTTGCTTTGGTTTTCTCAGTCCACCACAGGCTACGACACTCAAATGCACAGGTCAGCTGCCAATTTCCAGCTGCTTCTTTTCTTGTTGCCCATCTTGGTGATTTTCTTCATGTCTTCATATTCCATGTGTGGGCTGATCAACCTTCGATCTTGGCGATCGGCAACCGGGTCGCCTCGACGAGGTGCCTCACCATTGACCATTGCCATTTTAGTTTCTCTCATTCTAGTTTTGCTTTATTTCCGCCCCTCGTTCCATTGA

mRNA sequence

ATGGAGTGGTTAGAACCAAAGAGAAGGGGTCCAGAGTGGAAACAGGGGGGATGGACAGGCCAAACCCTAGGCGGCTCTGTTTCCTCTCCACCACCTCAATTGCTCACCATTTTTGGCATTGTCATTGTCTTGCTTTGGTTTTCTCAGTCCACCACAGGCTACGACACTCAAATGCACAGGTCAGCTGCCAATTTCCAGCTGCTTCTTTTCTTGTTGCCCATCTTGGTGATTTTCTTCATGTCTTCATATTCCATGTGTGGGCTGATCAACCTTCGATCTTGGCGATCGGCAACCGGGTCGCCTCGACGAGGTGCCTCACCATTGACCATTGCCATTTTAGTTTCTCTCATTCTAGTTTTGCTTTATTTCCGCCCCTCGTTCCATTGA

Coding sequence (CDS)

ATGGAGTGGTTAGAACCAAAGAGAAGGGGTCCAGAGTGGAAACAGGGGGGATGGACAGGCCAAACCCTAGGCGGCTCTGTTTCCTCTCCACCACCTCAATTGCTCACCATTTTTGGCATTGTCATTGTCTTGCTTTGGTTTTCTCAGTCCACCACAGGCTACGACACTCAAATGCACAGGTCAGCTGCCAATTTCCAGCTGCTTCTTTTCTTGTTGCCCATCTTGGTGATTTTCTTCATGTCTTCATATTCCATGTGTGGGCTGATCAACCTTCGATCTTGGCGATCGGCAACCGGGTCGCCTCGACGAGGTGCCTCACCATTGACCATTGCCATTTTAGTTTCTCTCATTCTAGTTTTGCTTTATTTCCGCCCCTCGTTCCATTGA

Protein sequence

MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRSAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTIAILVSLILVLLYFRPSFH

Homology

[Close]

BLAST of Cp4.1LG16g03140.1 vs. NCBI nr
Match: KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (622), Expect = 4.46e-81
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEWLEPKRRGPEWKQ  WTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR
Sbjct: 1   MEWLEPKRRGPEWKQ-EWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTIAILVSLILVL 120
           SA+NFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTI ILVSLILVL
Sbjct: 61  SASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVL 120

Query: 121 LYFRPSFH 128
           LYFRPSFH
Sbjct: 121 LYFRPSFH 127

[Close]

BLAST of Cp4.1LG16g03140.1 vs. NCBI nr
Match: KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 9.94e-41
Identity = 86/129 (66.67%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQG-GWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMH 60
           M+   PKRRGPEWK+G   TGQTL  SVS PP QLL IFGIVIVLLWFSQ   G++ Q++
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLS-SVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLN 60

Query: 61  RSAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTIAILVSLILV 120
           RS   FQL LFLLPI VIFFM SYS   LIN    RS TG  +RGASP TIAILV LILV
Sbjct: 61  RS---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILV 120

Query: 121 LLYFRPSFH 128
           LLY++ SFH
Sbjct: 121 LLYYQSSFH 125

[Close]

BLAST of Cp4.1LG16g03140.1 vs. NCBI nr
Match: KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])

HSP 1 Score: 130 bits (327), Expect = 4.88e-36
Identity = 76/128 (59.38%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEW  PKRRGPEWKQ GWTGQTL  S+S+PP  LLTIFGIVIVLLWFSQ T GY  Q+ +
Sbjct: 1   MEWFYPKRRGPEWKQ-GWTGQTLT-SISAPPLHLLTIFGIVIVLLWFSQYT-GYKAQLQQ 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTIAILVSLILVL 120
           +  NFQL L +LPIL+IFFM+ YS  G       R      R G SP  +AIL+ L+LVL
Sbjct: 61  TTVNFQLFLMVLPILLIFFMALYSSSGGWFNFQLRRPEAFHRAGGSPWGVAILLVLLLVL 120

Query: 121 LYFRPSFH 128
           L ++ SFH
Sbjct: 121 LSYQSSFH 125

[Close]

BLAST of Cp4.1LG16g03140.1 vs. NCBI nr
Match: XP_022763101.1 (uncharacterized protein LOC111308773 [Durio zibethinus])

HSP 1 Score: 129 bits (325), Expect = 9.24e-36
Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEW+ P+RRGP+WKQ GWTGQTL  SVS+PP  LLTIFGIV+VLLW SQ T GY  ++H 
Sbjct: 1   MEWVYPRRRGPQWKQ-GWTGQTLS-SVSAPPIPLLTIFGIVVVLLWLSQYT-GYKARLHH 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSP---RRGASPLTIAILVSLI 120
           +A NFQL + +LPIL+IFFM S+S  G   L  W+         R G SP  IAILV ++
Sbjct: 61  TAINFQLFIIILPILLIFFMISFSSSG--RLAFWQQRLEHETVHRSGGSPWGIAILVGVL 120

Query: 121 LVLLYFRPSFH 128
           LVLL ++ SFH
Sbjct: 121 LVLLCYQSSFH 126

[Close]

BLAST of Cp4.1LG16g03140.1 vs. NCBI nr
Match: GAV91497.1 (hypothetical protein CFOL_v3_34892 [Cephalotus follicularis])

HSP 1 Score: 128 bits (322), Expect = 2.97e-35
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEW   KRRGPEWKQ GWTGQT+  S+S+PP  LLT+FGIVIVLL  SQ T  Y++Q+H 
Sbjct: 1   MEWFYTKRRGPEWKQ-GWTGQTVA-SISTPPAALLTVFGIVIVLLLLSQYTQ-YNSQLHH 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR-GASPLTIAILVSLILV 120
           +A NF+L +FLLPIL+IFFM+++S  G  N +  R   G+ +R G SP  +AILV L+LV
Sbjct: 61  TATNFKLSIFLLPILLIFFMAAFSSSGRYNFQLPRIGHGAMQRAGGSPWGLAILVLLVLV 120

Query: 121 LLYFRPSFH 128
           LL ++ SFH
Sbjct: 121 LLSYQSSFH 126

[Close]

BLAST of Cp4.1LG16g03140.1 vs. ExPASy TrEMBL
Match: A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 4.81e-41
Identity = 86/129 (66.67%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQG-GWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMH 60
           M+   PKRRGPEWK+G   TGQTL  SVS PP QLL IFGIVIVLLWFSQ   G++ Q++
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLS-SVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLN 60

Query: 61  RSAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTIAILVSLILV 120
           RS   FQL LFLLPI VIFFM SYS   LIN    RS TG  +RGASP TIAILV LILV
Sbjct: 61  RS---FQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILV 120

Query: 121 LLYFRPSFH 128
           LLY++ SFH
Sbjct: 121 LLYYQSSFH 125

[Close]

BLAST of Cp4.1LG16g03140.1 vs. ExPASy TrEMBL
Match: A0A6P6AE81 (uncharacterized protein LOC111308773 OS=Durio zibethinus OX=66656 GN=LOC111308773 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 4.47e-36
Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEW+ P+RRGP+WKQ GWTGQTL  SVS+PP  LLTIFGIV+VLLW SQ T GY  ++H 
Sbjct: 1   MEWVYPRRRGPQWKQ-GWTGQTLS-SVSAPPIPLLTIFGIVVVLLWLSQYT-GYKARLHH 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSP---RRGASPLTIAILVSLI 120
           +A NFQL + +LPIL+IFFM S+S  G   L  W+         R G SP  IAILV ++
Sbjct: 61  TAINFQLFIIILPILLIFFMISFSSSG--RLAFWQQRLEHETVHRSGGSPWGIAILVGVL 120

Query: 121 LVLLYFRPSFH 128
           LVLL ++ SFH
Sbjct: 121 LVLLCYQSSFH 126

[Close]

BLAST of Cp4.1LG16g03140.1 vs. ExPASy TrEMBL
Match: A0A1Q3DG80 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34892 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 1.44e-35
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEW   KRRGPEWKQ GWTGQT+  S+S+PP  LLT+FGIVIVLL  SQ T  Y++Q+H 
Sbjct: 1   MEWFYTKRRGPEWKQ-GWTGQTVA-SISTPPAALLTVFGIVIVLLLLSQYTQ-YNSQLHH 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR-GASPLTIAILVSLILV 120
           +A NF+L +FLLPIL+IFFM+++S  G  N +  R   G+ +R G SP  +AILV L+LV
Sbjct: 61  TATNFKLSIFLLPILLIFFMAAFSSSGRYNFQLPRIGHGAMQRAGGSPWGLAILVLLVLV 120

Query: 121 LLYFRPSFH 128
           LL ++ SFH
Sbjct: 121 LLSYQSSFH 126

[Close]

BLAST of Cp4.1LG16g03140.1 vs. ExPASy TrEMBL
Match: A0A6M2F915 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 1.48e-35
Identity = 76/130 (58.46%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           MEW  PKRRGPEWKQ GWTGQT+G SVSSPP  LL IFGIVI LLW S  T GY  Q+H 
Sbjct: 1   MEWFYPKRRGPEWKQ-GWTGQTMG-SVSSPPLPLLAIFGIVISLLWLSHYT-GYKAQLHH 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLI--NLRSWRSATGSPRRGASPLTIAILVSLIL 120
           SA N Q+ L LLPIL+I FM+SYS   L+   LRS +  +  P  G+ P  IAI V ++L
Sbjct: 61  SAINLQIFLVLLPILLILFMASYSTNWLLYYRLRSSQHDSDPPSSGSFPWGIAIFVVVLL 120

Query: 121 VLLYFRPSFH 128
           +LL +R +FH
Sbjct: 121 MLLSYRSTFH 127

[Close]

BLAST of Cp4.1LG16g03140.1 vs. ExPASy TrEMBL
Match: A0A2P5C233 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4 SV=1)

HSP 1 Score: 127 bits (319), Expect = 4.23e-35
Identity = 71/130 (54.62%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           M W  PKRRGP+WKQ GWT QT+  SVS+P   LL IF IV+VLLW SQ T G+  Q+ +
Sbjct: 1   MGWFYPKRRGPQWKQ-GWTSQTVA-SVSAPSFHLLAIFSIVMVLLWLSQYT-GHKAQLQQ 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR--GASPLTIAILVSLIL 120
           +A NFQL +FLLP+L+I FM+SYS CGL N R  R    +P +  G+SP  +A+ V+L+L
Sbjct: 61  TAVNFQLFVFLLPVLLIVFMASYSSCGLFNFRFRRPRPDTPMQPAGSSPWGVAVFVALLL 120

Query: 121 VLLYFRPSFH 128
           VLL ++ SFH
Sbjct: 121 VLLSYQSSFH 127

[Close]

BLAST of Cp4.1LG16g03140.1 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 1   MEWLEPKRRGPEWKQGGWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHR 60
           M W   +RRG  WK+ GW  +TL  S S+PP  LL +  I+ +LL+ S S   Y  ++ +
Sbjct: 1   MGWFIKERRGGSWKR-GWLEETLLTS-SAPPLTLLALLAIISLLLFLS-SYPRYKYEVEK 60

Query: 61  SAANFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRR-----GASPLTIAILVS 120
           +AAN +L +  LPIL +F + S S    +  +S  S   +  +     G  P  + +++ 
Sbjct: 61  TAANLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLI 120

Query: 121 LILVLLYFRPSFH 129
           L+L+L+  +  FH
Sbjct: 121 LLLLLVSKQSYFH 130

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g03140.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG16g03140.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010871.1	4.46e-81	96.88	hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN61894.1	9.94e-41	66.67	hypothetical protein Csa_005908 [Cucumis sativus]	[more]
KAF3434655.1	4.88e-36	59.38	hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis]	[more]
XP_022763101.1	9.24e-36	57.25	uncharacterized protein LOC111308773 [Durio zibethinus]	[more]
GAV91497.1	2.97e-35	57.36	hypothetical protein CFOL_v3_34892 [Cephalotus follicularis]	[more]

BLAST of Cp4.1LG16g03140.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLH8	4.81e-41	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1	[more]
A0A6P6AE81	4.47e-36	57.25	uncharacterized protein LOC111308773 OS=Durio zibethinus OX=66656 GN=LOC11130877...	[more]
A0A1Q3DG80	1.44e-35	57.36	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34892 PE=4...	[more]
A0A6M2F915	1.48e-35	58.46	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A2P5C233	4.23e-35	54.62	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4...	[more]

BLAST of Cp4.1LG16g03140.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42146.1	2.0e-09	32.33	unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..128
None	No IPR available	PANTHER	PTHR33306:SF21	EXPRESSED PROTEIN	coord: 1..128

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG16g03140	Cp4.1LG16g03140	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03140.1:exon:001	Cp4.1LG16g03140.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03140.1:cds:001	Cp4.1LG16g03140.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g03140.1	Cp4.1LG16g03140.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane