Cp4.1LG13g07630.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCTGGAAACTACCACCAAATCTCTCTCAAGGAGGCTAACTCCGCCGCCAACTCCTCTTTTAGAGTCTATTACGGCGGCGCCACCGGTGCCATTCCGTTCAGATGGGAGTCACGCCCAGGCACTCCTAAGCATACTTATTCAGACACCTCTATCCCTCCTCTTACTCCTCCACCTTCTTACTATTCCTCTTCGCATTCTACTTCTAAAGCCTCTCCCAAGCCGACACGTTTCACTTCAATTTTTAGGAAATCTCGAACCGCCTCGTCTTTCTCCTTCTCCTCGTCCTCCTCTTCCTCGTCATGGTCTTCCTCTCGCTCGTCGCCGTCTGCTTTTGTTAGACCTAAATTCTTCAAACATCGTCGTTGCTTCTCGAATTCTCCAAGCTTGCCATTCGAGTGTAGCTTCGACGACAACGAGGGCGACGAGGCGGTGGGGAGCCCCGATTCTCCTACGTCGACTTTGTGCTTTGGTGGTGGTTCTTCTTCACGTAGAGCTTCATTATTCCGAGGTTGTTACCAGTTAGTGAGTGTGAAGAAGGCCTTGTTGTCCATTGTCGGACATGGATCTGCAAGCCGAGGTACTCATTAA ATGGAAGCTGGAAACTACCACCAAATCTCTCTCAAGGAGGCTAACTCCGCCGCCAACTCCTCTTTTAGAGTCTATTACGGCGGCGCCACCGGTGCCATTCCGTTCAGATGGGAGTCACGCCCAGGCACTCCTAAGCATACTTATTCAGACACCTCTATCCCTCCTCTTACTCCTCCACCTTCTTACTATTCCTCTTCGCATTCTACTTCTAAAGCCTCTCCCAAGCCGACACGTTTCACTTCAATTTTTAGGAAATCTCGAACCGCCTCGTCTTTCTCCTTCTCCTCGTCCTCCTCTTCCTCGTCATGGTCTTCCTCTCGCTCGTCGCCGTCTGCTTTTGTTAGACCTAAATTCTTCAAACATCGTCGTTGCTTCTCGAATTCTCCAAGCTTGCCATTCGAGTGTAGCTTCGACGACAACGAGGGCGACGAGGCGGTGGGGAGCCCCGATTCTCCTACGTCGACTTTGTGCTTTGGTGGTGGTTCTTCTTCACGTAGAGCTTCATTATTCCGAGGTTGTTACCAGTTAGTGAGTGTGAAGAAGGCCTTGTTGTCCATTGTCGGACATGGATCTGCAAGCCGAGGTACTCATTAA ATGGAAGCTGGAAACTACCACCAAATCTCTCTCAAGGAGGCTAACTCCGCCGCCAACTCCTCTTTTAGAGTCTATTACGGCGGCGCCACCGGTGCCATTCCGTTCAGATGGGAGTCACGCCCAGGCACTCCTAAGCATACTTATTCAGACACCTCTATCCCTCCTCTTACTCCTCCACCTTCTTACTATTCCTCTTCGCATTCTACTTCTAAAGCCTCTCCCAAGCCGACACGTTTCACTTCAATTTTTAGGAAATCTCGAACCGCCTCGTCTTTCTCCTTCTCCTCGTCCTCCTCTTCCTCGTCATGGTCTTCCTCTCGCTCGTCGCCGTCTGCTTTTGTTAGACCTAAATTCTTCAAACATCGTCGTTGCTTCTCGAATTCTCCAAGCTTGCCATTCGAGTGTAGCTTCGACGACAACGAGGGCGACGAGGCGGTGGGGAGCCCCGATTCTCCTACGTCGACTTTGTGCTTTGGTGGTGGTTCTTCTTCACGTAGAGCTTCATTATTCCGAGGTTGTTACCAGTTAGTGAGTGTGAAGAAGGCCTTGTTGTCCATTGTCGGACATGGATCTGCAAGCCGAGGTACTCATTAA MEAGNYHQISLKEANSAANSSFRVYYGGATGAIPFRWESRPGTPKHTYSDTSIPPLTPPPSYYSSSHSTSKASPKPTRFTSIFRKSRTASSFSFSSSSSSSSWSSSRSSPSAFVRPKFFKHRRCFSNSPSLPFECSFDDNEGDEAVGSPDSPTSTLCFGGGSSSRRASLFRGCYQLVSVKKALLSIVGHGSASRGTH Homology
BLAST of Cp4.1LG13g07630.1 vs. NCBI nr
Match: XP_023551135.1 (putative protein TPRXL [Cucurbita pepo subsp. pepo]) HSP 1 Score: 380 bits (976), Expect = 8.73e-133 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. NCBI nr
Match: KAG6578473.1 (hypothetical protein SDJN03_22921, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 371 bits (952), Expect = 4.76e-129 Identity = 195/202 (96.53%), Postives = 196/202 (97.03%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. NCBI nr
Match: KAG7016038.1 (hypothetical protein SDJN02_21142, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 370 bits (951), Expect = 6.52e-129 Identity = 194/201 (96.52%), Postives = 196/201 (97.51%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. NCBI nr
Match: XP_022993995.1 (uncharacterized serine-rich protein C215.13-like [Cucurbita maxima]) HSP 1 Score: 370 bits (950), Expect = 9.60e-129 Identity = 195/202 (96.53%), Postives = 195/202 (96.53%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. NCBI nr
Match: XP_022939362.1 (uncharacterized serine-rich protein C215.13-like [Cucurbita moschata]) HSP 1 Score: 369 bits (947), Expect = 2.66e-128 Identity = 193/201 (96.02%), Postives = 195/201 (97.01%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. ExPASy TrEMBL
Match: A0A6J1K022 (uncharacterized serine-rich protein C215.13-like OS=Cucurbita maxima OX=3661 GN=LOC111489820 PE=4 SV=1) HSP 1 Score: 370 bits (950), Expect = 4.65e-129 Identity = 195/202 (96.53%), Postives = 195/202 (96.53%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. ExPASy TrEMBL
Match: A0A6J1FGK5 (uncharacterized serine-rich protein C215.13-like OS=Cucurbita moschata OX=3662 GN=LOC111445301 PE=4 SV=1) HSP 1 Score: 369 bits (947), Expect = 1.29e-128 Identity = 193/201 (96.02%), Postives = 195/201 (97.01%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. ExPASy TrEMBL
Match: A0A5A7UC51 (Putative serine-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005080 PE=4 SV=1) HSP 1 Score: 262 bits (670), Expect = 5.87e-86 Identity = 161/231 (69.70%), Postives = 170/231 (73.59%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. ExPASy TrEMBL
Match: A0A1S4E178 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1) HSP 1 Score: 262 bits (670), Expect = 5.87e-86 Identity = 161/231 (69.70%), Postives = 170/231 (73.59%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. ExPASy TrEMBL
Match: A0A0A0K7T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1) HSP 1 Score: 262 bits (669), Expect = 8.06e-86 Identity = 154/201 (76.62%), Postives = 163/201 (81.09%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). ) HSP 1 Score: 99.0 bits (245), Expect = 4.6e-21 Identity = 89/195 (45.64%), Postives = 118/195 (60.51%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 69.3 bits (168), Expect = 3.9e-12 Identity = 69/163 (42.33%), Postives = 90/163 (55.21%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 3.6e-10 Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0
BLAST of Cp4.1LG13g07630.1 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07 Identity = 51/131 (38.93%), Postives = 64/131 (48.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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