Cp4.1LG08g13820.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG08g13820.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L22, chloroplastic
Location	Cp4.1LG08: 10012501 .. 10016995 (+)
Sequence length	1408
RNA-Seq Expression	Cp4.1LG08g13820.1
Synteny	Cp4.1LG08g13820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATGGGAGAAGTTTAGGGCTGTAGCGTTTATACCCACGACTCACACGCATCGCTAGGCTTCTTCTTATATCACTTCCGCGCACTTTCCTCTCCCGACTCTCTGCTCAGTTCAGCTCGCGCCTCTTCTTCCCTCTCGACTTGCGAAGGCCATTTGTCGAATCCCCATCGTTTGCTGGCGATGAAGCAAGAGTGATCGAAGTGTGCAACCATTCCACAATCAGCACGAGTTCTTCCATTACGATCAGATTCATTTCCCGTTTGGTATGGCTTTCGTATTCGTTTATTGTTCCATCTGCTGACAAACTAGCTCGACGTTCTTCCTCTGACCCATTTCAAAGATCAATTGCATTCAGATTATTAGCATAGTCAATTGAGTTTCTGGATTTGGACTCTTTTCTGTCAGCTACTCTGAGACATTGGTTAAAGTGCAGAAATACAAGGATATTTTGGATTATTTAGTACCTTAAATTTAGGAATTAATCCAGCAAATTGTTGATTGCAATGTGGATTGAGCTGCTGTCGTTTTGATTGTGTTGGTTTCATTTTTTTTTGTACCCTGGTTGAGGAAAATGTTGCCATCAATTCGCAGTTTCTCCTTTATGTTATATGAATCATAAAGTTTGAGAAATGATGTGATAGGAGATGAAATTGTGGATTTGCTGTAATAGGAAGTTTAGTGATGAAGTTCTCTTCTTTGTAATTTCTTATGTTGAATCTCTAGTTATCTGTTGGGTGACTAATTATCTTCAGTATTCAAAGATTACGTTGTCTTTCTTTTTGGTTTTCAGGACTTCCGCAGTATTCTTTTTTATCATGGGTGGTTGGCAAAGATGTATTCGGTCCATGCTTGGCCATGTGCAGAAGAGAGTGGAATTGAGTTATAATGCAGCTGCCAACTCTAATTGTTATCGCTCGCAATCCACTCTTTCATATGGTCAGTGATACTTTCTTTTGGATGAGTGTATGAATCATATAAGACCTTCCAGCCCATTCAAGCATCAACATATCGTACATATAATAGAAACAGAAAATTATTTGCTAAGTTGTTCTACCTTGCAGAATCATTAAGCGTGAATATTGATTTGATGAAGTATGTAAGAACTATAACCTTTACAATCTGCCTTAAAGTTATTCTTAAAAGTTGAAAGTGGTGGAGAAAAGAAAGCAGAAAACTGTTTTCAAAACAGCTTCCAAATAACTCGATCAATTTGATTAGAGCTTTCTTTTGGGTTGTGTGGAACAAGAGGAAACAAAGGTTTTTGTGAACAATGAGGACAATGATCAACCCATAATATTACATTACTTAATAGCATTAATTACCCTAAACCTTATGATAGACTTGTTCATAACATTACTTGGCTATCTTGGTGTAAATTGTCTTCTTTATTCAATCTTATAACTTGTTCCTCTTCTCCAATATGGAATCCGAAACGCGATTAAATAGGTTGCAATCCTGGTAATTTGTGTTTTTGAGAGGACTCCCTCTTCAAAATGTTCATCATATTATTTGTTCATTACAAAACTGTTTTGCATCTGACTAAAATCACTAGAACCACAGAATCTACAAAACTGAAGTTCCTGAGTTGAATCATTTTCTTATGCAGGGCAGTTGCCTTATTTACAGAGACTTTTGAAGCCATCCTCAACGGGCCTTACACAGCCTTACTATCGGTGTCTCCAACAGATGGTACACATACCAACCATACCATCCACTAAATCTTTATGATAATAATTTTGATAAAACACTTGTAATCATTATATTTTCTGAAACATGTCTTCACTGTATTATCATTTTTTTTTTCCTTTTATAGGGAATTTCCAGTTCAAGGATGTTATTAGCAGATAAATCTGAGGAACCAATTTCATCTCCTCTGACTTCTGCTTTGGCTATAAGCAGTGGAAAAGATGGAGATACAGACCAGAAAGTAGTCTCTAAACCTTCCAAAGTCCAAGCTATATTAAAGGGAATCAAACAGGTGAAATCTTTAGATTCATTCTTGTTACTCACCAAAAGCTGAAGTAAAAAGAGATGAAAGTCATAATGGAGTGAAACTTGCCAATTTTTTTAAGTTTGTGATTTTGTAATTATAGAACTTGATAAAATTTGAATTTTTTATGATTTTCAATTCATACATCAAACTTATTAGATTTTAGGACAAAAACACTCTTGGTGTTTGAAGTTTGAGTTTGATGTCTATGTGGTCTGTGAAGTTTGAGTTTGTTGTTCATTTGTTCTTTGAAATTTCAAAAGTGACACTTTTAGTCTGTGAGGTTTAGAAAATAGTTCAAAATGATTCTTGAGCTCATTTGACTGATGATTAATATATATATAGACAGATGATGTTGATATGCTAATTACTCGCTTTCTGACTGGGTAGATCTTTTTATGACTGAACATGTTAGTTGGTCATCACATTTCTCTCTCTTTCCTATTTTCCTTTCTTTCTTTTTCTCTTCAGCGAACTTTGCTAGCACTAGTGTAACATTCACTGTCCGCTTTCCTATGGCCTCTTTTTTCTTCTCTTTCTTCCATTCTTCTTCTAATTTGCCTCCATCAAACGTGCACCACTATCTCCTCTTCCCTGTCTCATATGCCACTGCACTTGTTGTAGCTCACCCTCTCGTAGACTTGAAACAAAGTTGAGCTACATGTTGCTGACGAGATGGTAGAAAATGTGACAGGGGAGGAGGGAGATGGTGATCTTTTCATTAGTCAACTTCCAGCCAAATGAGCTTAGGAATCATTTTGAACCTTTTCCAAACCTTAGGGACAAGCCTCCTTTGAAACTTTTGAAACTTTGAGGACCAAGCTGAAACAACCCAAGCCCACTGCTAGCAAATATTGTCCGTTTTGGCCTATTACGTATCGCCATCAACCACACGGTTTTAAAACGCATCTACTAGGGAGAGGTTTCCACACCCCCGTATAAGGAATGCTTTGTTCCCTCTCCGACCAATGTGAGATCTCACAATCCACCCGCCTTGGGTGCTTAGCATTCTCGTTGACACACCGCCCGGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACTATTAGCTGATATTGTCCGTTTTGGCCCGTTGTGTATTGCCGTCAACTTCACGGTTTTGAAACGCATATACTAGGGAGAGGTTTCCACACCCTTATAAGAAATGATTCGTTCCCTCTCCAGCCGATGTGAGATCTCACAAAGCAAACATCAAACTCAAACTTCCAAGGACCATAAATGTATTTTATATATTGGTTTAAGTGTGGTAACTCACTTTTTGTTGATTGAAGTAGTTTCCACGAGGCGTTGCGACTCATTTGGTTTGCCTTTTATTTAAAAAGAATTAATATAACTATTACATTTGAATTGTTCTACCAGAGTCCCAAAAAAGTCAACTTGGTTGCTGCTTTAGTTCGAGGCATGCGTGTTGAAGATGCACTGATGCAGTTACAATTGACTGTAAAACGAGCTTCAAAAACTGTTTATCAGGTGAAACACTATCTTACAGTGCTCGATGTACACCTCGTTTACCGACGACTGTGATCGAATATTATTTGATTTCATTATTTGGGATAGTCTGCCAGACTTGAGCATACAAATGCTTGAGTTTAATGAATGATTTTGGAGCTGGAGACCATTTTATTTTTAGAAAATTTCAAGTTAATGCGAGTTTCATGTCATAAATTGTTCTCCCATTTCATATGCAATATGTAACTCCTTTGGTATTGATAAAAGTTACCGATGATTTAAAAATTTGTGTTGTGACATTTCGAAGGTCATTCACTCAGCCAAAGCAAATGCAACCCACAATCATGGACTGGATTCAGATCGGCTCCTTGTTGGTAAATGAAGCAATCATAGACAAACCATTGTTTATATTTTATGGTTTTGTTTATTTAACTTCACTTCCTGTTATCTTGTACAGCTGAGGCATTTGTAGGAAAGGGATTCTTCAAGAAAAGAATATCATATCATGCCAAAGGAAAATGTGGGATCAAAGTTAGACCAGAATGTCGGCTAACAGTAGTTCTTAGGGAAACAACCCCCGAAGAAGAGGCAGAGATTGCGAAGCTGCGAGTTAGAAAATTCCGCAAGCTTTCCAAGCGCGAAAGTCGACTCGTACCTCATAAGCTTATCGAAACCACACCTATCTGGAACCGAAAGGGCAAAGCTAGAGCAAACGAAGAAGGTCGAATGGATTCATAATCTCGTCTCTTTCTTCTTGTCATTTCTTACTTTCATGTCCTTTTGTTCTAGACAATGTAGGCAGGATAAGTGATTTTAATGTGGTAGGAACCCAAGGGATAGCTTTTGCACAAGGAAGCCTTTGCTGCAATCACGTTCTGTTGTTTTTCTGGCATTCTTGTATAAAAATCATGTGTCCTCATTTTGTGGAGGATTTTCTTTTGTTTCGCTTATACAATCTTCACAACTTTTCACAACTTTTTTGGATTTGAATGGAAGACTGTCTCGAAAAGTCATGTGATGACTTGTTTCA

mRNA sequence

CATATGGGAGAAGTTTAGGGCTGTAGCGTTTATACCCACGACTCACACGCATCGCTAGGCTTCTTCTTATATCACTTCCGCGCACTTTCCTCTCCCGACTCTCTGCTCAGTTCAGCTCGCGCCTCTTCTTCCCTCTCGACTTGCGAAGGCCATTTGTCGAATCCCCATCGTTTGCTGGCGATGAAGCAAGAGTGATCGAAGTGTGCAACCATTCCACAATCAGCACGAGTTCTTCCATTACGATCAGATTCATTTCCCGTTTGGACTTCCGCAGTATTCTTTTTTATCATGGGTGGTTGGCAAAGATGTATTCGGTCCATGCTTGGCCATGTGCAGAAGAGAGTGGAATTGAGTTATAATGCAGCTGCCAACTCTAATTGTTATCGCTCGCAATCCACTCTTTCATATGGGCAGTTGCCTTATTTACAGAGACTTTTGAAGCCATCCTCAACGGGCCTTACACAGCCTTACTATCGGTGTCTCCAACAGATGGGAATTTCCAGTTCAAGGATGTTATTAGCAGATAAATCTGAGGAACCAATTTCATCTCCTCTGACTTCTGCTTTGGCTATAAGCAGTGGAAAAGATGGAGATACAGACCAGAAAGTAGTCTCTAAACCTTCCAAAGTCCAAGCTATATTAAAGGGAATCAAACAGAGTCCCAAAAAAGTCAACTTGGTTGCTGCTTTAGTTCGAGGCATGCGTGTTGAAGATGCACTGATGCAGTTACAATTGACTGTAAAACGAGCTTCAAAAACTGTTTATCAGGTCATTCACTCAGCCAAAGCAAATGCAACCCACAATCATGGACTGGATTCAGATCGGCTCCTTGTTGCTGAGGCATTTGTAGGAAAGGGATTCTTCAAGAAAAGAATATCATATCATGCCAAAGGAAAATGTGGGATCAAAGTTAGACCAGAATGTCGGCTAACAGTAGTTCTTAGGGAAACAACCCCCGAAGAAGAGGCAGAGATTGCGAAGCTGCGAGTTAGAAAATTCCGCAAGCTTTCCAAGCGCGAAAGTCGACTCGTACCTCATAAGCTTATCGAAACCACACCTATCTGGAACCGAAAGGGCAAAGCTAGAGCAAACGAAGAAGGTCGAATGGATTCATAATCTCGTCTCTTTCTTCTTGTCATTTCTTACTTTCATGTCCTTTTGTTCTAGACAATGTAGGCAGGATAAGTGATTTTAATGTGGTAGGAACCCAAGGGATAGCTTTTGCACAAGGAAGCCTTTGCTGCAATCACGTTCTGTTGTTTTTCTGGCATTCTTGTATAAAAATCATGTGTCCTCATTTTGTGGAGGATTTTCTTTTGTTTCGCTTATACAATCTTCACAACTTTTCACAACTTTTTTGGATTTGAATGGAAGACTGTCTCGAAAAGTCATGTGATGACTTGTTTCA

Coding sequence (CDS)

ATGGGTGGTTGGCAAAGATGTATTCGGTCCATGCTTGGCCATGTGCAGAAGAGAGTGGAATTGAGTTATAATGCAGCTGCCAACTCTAATTGTTATCGCTCGCAATCCACTCTTTCATATGGGCAGTTGCCTTATTTACAGAGACTTTTGAAGCCATCCTCAACGGGCCTTACACAGCCTTACTATCGGTGTCTCCAACAGATGGGAATTTCCAGTTCAAGGATGTTATTAGCAGATAAATCTGAGGAACCAATTTCATCTCCTCTGACTTCTGCTTTGGCTATAAGCAGTGGAAAAGATGGAGATACAGACCAGAAAGTAGTCTCTAAACCTTCCAAAGTCCAAGCTATATTAAAGGGAATCAAACAGAGTCCCAAAAAAGTCAACTTGGTTGCTGCTTTAGTTCGAGGCATGCGTGTTGAAGATGCACTGATGCAGTTACAATTGACTGTAAAACGAGCTTCAAAAACTGTTTATCAGGTCATTCACTCAGCCAAAGCAAATGCAACCCACAATCATGGACTGGATTCAGATCGGCTCCTTGTTGCTGAGGCATTTGTAGGAAAGGGATTCTTCAAGAAAAGAATATCATATCATGCCAAAGGAAAATGTGGGATCAAAGTTAGACCAGAATGTCGGCTAACAGTAGTTCTTAGGGAAACAACCCCCGAAGAAGAGGCAGAGATTGCGAAGCTGCGAGTTAGAAAATTCCGCAAGCTTTCCAAGCGCGAAAGTCGACTCGTACCTCATAAGCTTATCGAAACCACACCTATCTGGAACCGAAAGGGCAAAGCTAGAGCAAACGAAGAAGGTCGAATGGATTCATAA

Protein sequence

MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQPYYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKLSKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS

Homology

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BLAST of Cp4.1LG08g13820.1 vs. ExPASy Swiss-Prot
Match: Q92QG5 (50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=rplV PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-19
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 110 KPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 169
           K ++ QA+ + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVKKTLESAIANA 70

Query: 170 THNHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEA 228
            +NH LD D L+VAEAFVGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAKGEA 128

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BLAST of Cp4.1LG08g13820.1 vs. ExPASy Swiss-Prot
Match: A6U864 (50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=rplV PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-19
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 110 KPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 169
           K ++ QA+ + I+ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAVARTIRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVRKTLESAIANA 70

Query: 170 THNHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEA 228
            +NH LD D L+VAEAFVGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDSLIVAEAFVGKSIVMKRFHARGRGRASRVEKPFAHLTIVVREVEAKGEA 128

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BLAST of Cp4.1LG08g13820.1 vs. ExPASy Swiss-Prot
Match: Q0ANQ5 (50S ribosomal protein L22 OS=Maricaulis maris (strain MCS10) OX=394221 GN=rplV PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.6e-19
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 112 SKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 171
           ++ +A L+ I+ SP+K+NLVAAL+RG +VE AL  L+ + KR SK V + + SA ANA +
Sbjct: 13  NEARAKLRMIRTSPQKLNLVAALIRGKKVERALADLEFSRKRISKEVKKTLESAIANAEN 72

Query: 172 NHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRE 221
           NHGLD D L+V+EAFVGK    KR    A+G+    ++P   LT+V+RE
Sbjct: 73  NHGLDIDSLVVSEAFVGKNLVMKRFRARARGRGAKILKPFSELTIVVRE 121

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BLAST of Cp4.1LG08g13820.1 vs. ExPASy Swiss-Prot
Match: Q8UE23 (50S ribosomal protein L22 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=rplV PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-18
Identity = 52/118 (44.07%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 110 KPSKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANA 169
           K ++ QAI + ++ SP+K+NLVAAL+RG +V+ AL +L+ + KR + TV + + SA ANA
Sbjct: 11  KDNEAQAIARTLRVSPQKLNLVAALIRGKKVDRALAELEFSRKRIAGTVKKTLESAIANA 70

Query: 170 THNHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEA 228
            +NH LD D L+VAEA+VGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 71  ENNHDLDVDALVVAEAYVGKSITMKRFHARGRGRASRIEKPFAHLTIVVREVEEKGEA 128

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BLAST of Cp4.1LG08g13820.1 vs. ExPASy Swiss-Prot
Match: Q98N52 (50S ribosomal protein L22 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=rplV PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-18
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 112 SKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 171
           ++ +A+L+ I+ SP+K+NLVAAL+RG +V  AL  L+ + KR S TV + + SA ANA +
Sbjct: 13  NEARAVLRTIRISPQKLNLVAALIRGKKVATALSDLEFSAKRISGTVKKTLESAIANAEN 72

Query: 172 NHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEA 228
           NH LD D L+VAEA+VGK    KR     +G+     +P   LT+V+RE   + EA
Sbjct: 73  NHDLDVDALVVAEAYVGKSIVMKRFHARGRGRASRIEKPFSHLTIVVREVEEKGEA 128

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BLAST of Cp4.1LG08g13820.1 vs. NCBI nr
Match: XP_023540568.1 (uncharacterized protein LOC111800895 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 530 bits (1365), Expect = 1.73e-189
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS
Sbjct: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275

[Close]

BLAST of Cp4.1LG08g13820.1 vs. NCBI nr
Match: XP_022955020.1 (uncharacterized protein LOC111457075 [Cucurbita moschata])

HSP 1 Score: 527 bits (1357), Expect = 2.88e-188
Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           SKRESRLVPHKLIETTPIWNRKGKARANEEGRM S
Sbjct: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMAS 275

[Close]

BLAST of Cp4.1LG08g13820.1 vs. NCBI nr
Match: KAG7027774.1 (rplV [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 527 bits (1357), Expect = 2.32e-187
Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 58  MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 117

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 118 YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 177

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 178 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 237

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 238 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 297

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           SKRESRLVPHKLIETTPIWNRKGKARANEEGRM S
Sbjct: 298 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMAS 332

[Close]

BLAST of Cp4.1LG08g13820.1 vs. NCBI nr
Match: KAG6596231.1 (hypothetical protein SDJN03_09411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 522 bits (1345), Expect = 3.11e-185
Identity = 271/273 (99.27%), Postives = 272/273 (99.63%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 49  MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 108

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 109 YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 168

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 169 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 228

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 229 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 288

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRM 273
           SKRESRLVPHKLIETTPIWNRKGKARANEEG +
Sbjct: 289 SKRESRLVPHKLIETTPIWNRKGKARANEEGSV 321

[Close]

BLAST of Cp4.1LG08g13820.1 vs. NCBI nr
Match: XP_022971240.1 (uncharacterized protein LOC111470023 [Cucurbita maxima])

HSP 1 Score: 519 bits (1337), Expect = 3.22e-185
Identity = 270/275 (98.18%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAA NS CYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 1   MGGWQRCIRSMLGHVQKRVELSYNAAVNSKCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKG FKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 181 LVAEAFVGKGLFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           SKRESRLVPHKLIETTPIWNRKGKARANEEG+M S
Sbjct: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGQMAS 275

[Close]

BLAST of Cp4.1LG08g13820.1 vs. ExPASy TrEMBL
Match: A0A6J1GU02 (50S ribosomal protein L22, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457075 PE=3 SV=1)

HSP 1 Score: 527 bits (1357), Expect = 1.39e-188
Identity = 274/275 (99.64%), Postives = 274/275 (99.64%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           SKRESRLVPHKLIETTPIWNRKGKARANEEGRM S
Sbjct: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMAS 275

[Close]

BLAST of Cp4.1LG08g13820.1 vs. ExPASy TrEMBL
Match: A0A6J1I573 (50S ribosomal protein L22, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470023 PE=3 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 1.56e-185
Identity = 270/275 (98.18%), Postives = 271/275 (98.55%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           MGGWQRCIRSMLGHVQKRVELSYNAA NS CYRSQSTLSYGQLPYLQRLLKPSSTGLTQP
Sbjct: 1   MGGWQRCIRSMLGHVQKRVELSYNAAVNSKCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120
           YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG
Sbjct: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILKG 120

Query: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180
           IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL
Sbjct: 121 IKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDRL 180

Query: 181 LVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240
           LVAEAFVGKG FKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL
Sbjct: 181 LVAEAFVGKGLFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRKL 240

Query: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           SKRESRLVPHKLIETTPIWNRKGKARANEEG+M S
Sbjct: 241 SKRESRLVPHKLIETTPIWNRKGKARANEEGQMAS 275

[Close]

BLAST of Cp4.1LG08g13820.1 vs. ExPASy TrEMBL
Match: A0A6J1DVK1 (50S ribosomal protein L22, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024848 PE=3 SV=1)

HSP 1 Score: 483 bits (1242), Expect = 4.86e-171
Identity = 251/276 (90.94%), Postives = 263/276 (95.29%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           M GWQR +RSMLGHVQKRVELSYN AANSNCYR QS+LSYG+LPYLQRLLKPSS G+TQP
Sbjct: 1   MVGWQRYVRSMLGHVQKRVELSYNVAANSNCYRLQSSLSYGELPYLQRLLKPSSAGITQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEP-ISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILK 120
           YY+CLQQMGISSSR LLADKSEE  +SSPLTSALA+SSGK+GD DQKVVSKPSKVQAILK
Sbjct: 61  YYQCLQQMGISSSRFLLADKSEEAAVSSPLTSALALSSGKEGDKDQKVVSKPSKVQAILK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDR 180
           GIKQSPKKVNLVAALVRGMRVEDAL+QLQLTVKRASKTVYQVIHSAKANATHNHG+DSDR
Sbjct: 121 GIKQSPKKVNLVAALVRGMRVEDALLQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDR 180

Query: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRK 240
           LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVV+RE TPEEEAEIAKLRV  FRK
Sbjct: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVVREITPEEEAEIAKLRVSNFRK 240

Query: 241 LSKRESRLVPHKLIETTPIWNRKGKARANEEGRMDS 275
           L+KRESRLVPHKLIETTPIWNRKGKARANEEGRM S
Sbjct: 241 LTKRESRLVPHKLIETTPIWNRKGKARANEEGRMAS 276

[Close]

BLAST of Cp4.1LG08g13820.1 vs. ExPASy TrEMBL
Match: A0A1S4E5G5 (50S ribosomal protein L22, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992071 PE=3 SV=1)

HSP 1 Score: 437 bits (1124), Expect = 3.83e-153
Identity = 228/271 (84.13%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           M  WQRC+RS+LGH+Q +VELSYNAA+NS+ YR QS+LS G+LPYLQRLLKPSS G+ QP
Sbjct: 1   MVSWQRCLRSILGHLQNKVELSYNAASNSS-YRLQSSLSNGELPYLQRLLKPSSAGIAQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGD-TDQKVVSKPSKVQAILK 120
            +RCLQQMGISSSRMLLADK EE +SSPLTSALA+SSGKDGD TDQKVV K SKVQA+LK
Sbjct: 61  DFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVVCKRSKVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDR 180
           GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHG+D+DR
Sbjct: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDADR 180

Query: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRK 240
           LLVAEAFVGKG F+KR+SYHAKG+CGI+V+PECRLTVVLRETTPEEEA+IAKL+V  FRK
Sbjct: 181 LLVAEAFVGKGLFRKRLSYHAKGRCGIEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRK 240

Query: 241 LSKRESRLVPHKLIETTPIWNRKGKARANEE 270
           L+KRE+RLVPHKLIETTPIWNRKGKARA  E
Sbjct: 241 LTKRENRLVPHKLIETTPIWNRKGKARATTE 270

[Close]

BLAST of Cp4.1LG08g13820.1 vs. ExPASy TrEMBL
Match: A0A0A0LVB7 (50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G153000 PE=3 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 2.21e-152
Identity = 226/271 (83.39%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRSQSTLSYGQLPYLQRLLKPSSTGLTQP 60
           M GWQRC+RSMLGH+Q +VELSYNAA+NS+ YR QS+LS G+LPYLQRLLKPSS  + QP
Sbjct: 1   MVGWQRCLRSMLGHLQNKVELSYNAASNSS-YRLQSSLSNGELPYLQRLLKPSSAVIAQP 60

Query: 61  YYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGD-TDQKVVSKPSKVQAILK 120
            +RCLQQMGISSSRMLLADK EE +SSPLTSALA+SSGKDGD TDQKV+ K S+VQA+LK
Sbjct: 61  DFRCLQQMGISSSRMLLADKPEEAVSSPLTSALALSSGKDGDKTDQKVICKRSQVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDR 180
           GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHG+DSDR
Sbjct: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGMDSDR 180

Query: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRK 240
           LLVAEAFVGKG F+KR+SYHAKG+CG++V+PECRLTVVLRETTPEEEA+IAKL+V  FRK
Sbjct: 181 LLVAEAFVGKGLFRKRLSYHAKGRCGVEVKPECRLTVVLRETTPEEEAKIAKLKVSNFRK 240

Query: 241 LSKRESRLVPHKLIETTPIWNRKGKARANEE 270
           L+KRE +LVPHKLIETTPIWNRKGKA+AN E
Sbjct: 241 LTKREHQLVPHKLIETTPIWNRKGKAKANTE 270

[Close]

BLAST of Cp4.1LG08g13820.1 vs. TAIR 10
Match: AT4G28360.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 299.3 bits (765), Expect = 3.2e-81
Identity = 166/265 (62.64%), Postives = 211/265 (79.62%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAAN--SNCYRSQSTLSYGQLPYLQRLLKPSSTGLT 60
           M GW+R +++++  V +RV+ S+ + AN  S+    +S  S G   YLQ LL+PS +  +
Sbjct: 1   MVGWKRNLQTVIRQVGRRVKNSHISTANYSSSTRNLESPFSQG---YLQSLLRPSYS--S 60

Query: 61  QPYYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAIL 120
           +P Y  LQQ+GIS+SR L A  SEEP+SSPL+S   + SGK  + +QK++ K  KVQA+L
Sbjct: 61  RPLYHHLQQLGISTSRQLQA--SEEPVSSPLSSPALLGSGK--EEEQKIIPKRQKVQAVL 120

Query: 121 KGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSD 180
           K IKQSPKKVNLVAALVRGMRVEDAL+QLQ+TVKRA++TVY+VIH+A+ANATHNHGLD D
Sbjct: 121 KSIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDPD 180

Query: 181 RLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFR 240
           RLLVAEAFVGKG F K+++YHAKG+ GI   P CRLTV++RETTPEEEAEIA+L+V  F+
Sbjct: 181 RLLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNFK 240

Query: 241 KLSKRESRLVPHKLIETTPIWNRKG 264
           K SKRE +LVPHKLIET+PIWNR+G
Sbjct: 241 KKSKRERQLVPHKLIETSPIWNRRG 256

[Close]

BLAST of Cp4.1LG08g13820.1 vs. TAIR 10
Match: AT1G52370.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-80
Identity = 166/264 (62.88%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRS-QSTLSYGQLPYLQRLLKPSSTGLTQ 60
           M GWQ+ ++ ++  V KRV+ S+ + AN +  R+ +S  S G   YLQ LL+  ST  ++
Sbjct: 1   MAGWQKNLQIVIRQVGKRVKDSHISTANYSSTRNLESPFSQG---YLQSLLR--STYSSR 60

Query: 61  PYYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILK 120
           P Y  LQQ+GIS+SR L A   EEP+SSPL+S   + SGK  + +QK++ K  KVQA+LK
Sbjct: 61  PLYYHLQQLGISTSRQLQA--GEEPVSSPLSSPALLGSGK--EEEQKIIPKRQKVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDR 180
            IKQSPKKVNLVAALVRGMRVEDALMQLQ+TVKRAS+TVY+VIH+A+ANATHNHGLD DR
Sbjct: 121 SIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDR 180

Query: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRK 240
           LLVAEAFVGKG F K+++YHAKG+ GI   P CRLTV++RETT EEEAEIA+L+V  F+K
Sbjct: 181 LLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKK 240

Query: 241 LSKRESRLVPHKLIETTPIWNRKG 264
           L+KR+ +LVPHKLIET+PIWNR+G
Sbjct: 241 LNKRQRQLVPHKLIETSPIWNRRG 255

[Close]

BLAST of Cp4.1LG08g13820.1 vs. TAIR 10
Match: AT1G52370.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-80
Identity = 166/264 (62.88%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRS-QSTLSYGQLPYLQRLLKPSSTGLTQ 60
           M GWQ+ ++ ++  V KRV+ S+ + AN +  R+ +S  S G   YLQ LL+  ST  ++
Sbjct: 1   MAGWQKNLQIVIRQVGKRVKDSHISTANYSSTRNLESPFSQG---YLQSLLR--STYSSR 60

Query: 61  PYYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILK 120
           P Y  LQQ+GIS+SR L A   EEP+SSPL+S   + SGK  + +QK++ K  KVQA+LK
Sbjct: 61  PLYYHLQQLGISTSRQLQA--GEEPVSSPLSSPALLGSGK--EEEQKIIPKRQKVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDR 180
            IKQSPKKVNLVAALVRGMRVEDALMQLQ+TVKRAS+TVY+VIH+A+ANATHNHGLD DR
Sbjct: 121 SIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDR 180

Query: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRK 240
           LLVAEAFVGKG F K+++YHAKG+ GI   P CRLTV++RETT EEEAEIA+L+V  F+K
Sbjct: 181 LLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKK 240

Query: 241 LSKRESRLVPHKLIETTPIWNRKG 264
           L+KR+ +LVPHKLIET+PIWNR+G
Sbjct: 241 LNKRQRQLVPHKLIETSPIWNRRG 255

[Close]

BLAST of Cp4.1LG08g13820.1 vs. TAIR 10
Match: AT1G52370.3 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-80
Identity = 166/264 (62.88%), Postives = 209/264 (79.17%), Query Frame = 0


Query: 1   MGGWQRCIRSMLGHVQKRVELSYNAAANSNCYRS-QSTLSYGQLPYLQRLLKPSSTGLTQ 60
           M GWQ+ ++ ++  V KRV+ S+ + AN +  R+ +S  S G   YLQ LL+  ST  ++
Sbjct: 1   MAGWQKNLQIVIRQVGKRVKDSHISTANYSSTRNLESPFSQG---YLQSLLR--STYSSR 60

Query: 61  PYYRCLQQMGISSSRMLLADKSEEPISSPLTSALAISSGKDGDTDQKVVSKPSKVQAILK 120
           P Y  LQQ+GIS+SR L A   EEP+SSPL+S   + SGK  + +QK++ K  KVQA+LK
Sbjct: 61  PLYYHLQQLGISTSRQLQA--GEEPVSSPLSSPALLGSGK--EEEQKIIPKRQKVQAVLK 120

Query: 121 GIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATHNHGLDSDR 180
            IKQSPKKVNLVAALVRGMRVEDALMQLQ+TVKRAS+TVY+VIH+A+ANATHNHGLD DR
Sbjct: 121 SIKQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDR 180

Query: 181 LLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAKLRVRKFRK 240
           LLVAEAFVGKG F K+++YHAKG+ GI   P CRLTV++RETT EEEAEIA+L+V  F+K
Sbjct: 181 LLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKK 240

Query: 241 LSKRESRLVPHKLIETTPIWNRKG 264
           L+KR+ +LVPHKLIET+PIWNR+G
Sbjct: 241 LNKRQRQLVPHKLIETSPIWNRRG 255

[Close]

BLAST of Cp4.1LG08g13820.1 vs. TAIR 10
Match: ATCG00810.1 (ribosomal protein L22 )

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-09
Identity = 41/151 (27.15%), Postives = 78/151 (51.66%), Query Frame = 0


Query: 112 SKVQAILKGIKQSPKKVNLVAALVRGMRVEDALMQLQLTVKRASKTVYQVIHSAKANATH 171
           ++V A+ + I  S  K   V   +RG   E+ALM L+L   R    ++++++SA ANA+H
Sbjct: 11  TEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASH 70

Query: 172 NHGLDSDRLLVAEAFVGKGFFKKRISYHAKGKCGIKVRPECRLTVVLRETTPEEEAEIAK 231
           N G     L++++A V +G   K++   A+G+     R  C +T+VL + +  ++ E   
Sbjct: 71  NKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQYEEYL 130

Query: 232 LRVRKFRKLSKRESRLVPHKLIETTPIWNRK 263
           + ++K    S     L  +    +  +W++K
Sbjct: 131 MYLKK-PGCSNENRNLTCYDTYSSGGLWDKK 160

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g13820.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q92QG5	3.4e-19	44.92	50S ribosomal protein L22 OS=Rhizobium meliloti (strain 1021) OX=266834 GN=rplV ...	[more]
A6U864	3.4e-19	44.92	50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=...	[more]
Q0ANQ5	7.6e-19	48.62	50S ribosomal protein L22 OS=Maricaulis maris (strain MCS10) OX=394221 GN=rplV P...	[more]
Q8UE23	2.2e-18	44.07	50S ribosomal protein L22 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=1...	[more]
Q98N52	2.2e-18	44.83	50S ribosomal protein L22 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 91...	[more]

BLAST of Cp4.1LG08g13820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540568.1	1.73e-189	100.00	uncharacterized protein LOC111800895 [Cucurbita pepo subsp. pepo]	[more]
XP_022955020.1	2.88e-188	99.64	uncharacterized protein LOC111457075 [Cucurbita moschata]	[more]
KAG7027774.1	2.32e-187	99.64	rplV [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596231.1	3.11e-185	99.27	hypothetical protein SDJN03_09411, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022971240.1	3.22e-185	98.18	uncharacterized protein LOC111470023 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG08g13820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GU02	1.39e-188	99.64	50S ribosomal protein L22, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I573	1.56e-185	98.18	50S ribosomal protein L22, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1DVK1	4.86e-171	90.94	50S ribosomal protein L22, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S4E5G5	3.83e-153	84.13	50S ribosomal protein L22, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992071...	[more]
A0A0A0LVB7	2.21e-152	83.39	50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G153...	[more]

BLAST of Cp4.1LG08g13820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28360.1	3.2e-81	62.64	Ribosomal protein L22p/L17e family protein	[more]
AT1G52370.1	2.1e-80	62.88	Ribosomal protein L22p/L17e family protein	[more]
AT1G52370.2	2.1e-80	62.88	Ribosomal protein L22p/L17e family protein	[more]
AT1G52370.3	2.1e-80	62.88	Ribosomal protein L22p/L17e family protein	[more]
ATCG00810.1	5.6e-09	27.15	ribosomal protein L22	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 118..219 e-value: 5.0E-26 score: 90.9
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 114..218 e-value: 5.04972E-36 score: 122.599
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 99..252 e-value: 2.0E-48 score: 166.2
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 106..221
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	TIGRFAM	TIGR01044	TIGR01044	coord: 117..217 e-value: 2.1E-23 score: 80.5
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	PANTHER	PTHR13501	CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED	coord: 35..258
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	HAMAP	MF_01331_B	Ribosomal_L22_B	coord: 112..221 score: 20.380047
None	No IPR available	PANTHER	PTHR13501:SF8	39S RIBOSOMAL PROTEIN L22, MITOCHONDRIAL	coord: 35..258

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG08g13820	Cp4.1LG08g13820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g13820.1:exon:001	Cp4.1LG08g13820.1:exon:001	exon
Cp4.1LG08g13820.1:exon:002	Cp4.1LG08g13820.1:exon:002	exon
Cp4.1LG08g13820.1:exon:003	Cp4.1LG08g13820.1:exon:003	exon
Cp4.1LG08g13820.1:exon:004	Cp4.1LG08g13820.1:exon:004	exon
Cp4.1LG08g13820.1:exon:005	Cp4.1LG08g13820.1:exon:005	exon
Cp4.1LG08g13820.1:exon:006	Cp4.1LG08g13820.1:exon:006	exon
Cp4.1LG08g13820.1:exon:007	Cp4.1LG08g13820.1:exon:007	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g13820.1:five_prime_utr:001	Cp4.1LG08g13820.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG08g13820.1:five_prime_utr:002	Cp4.1LG08g13820.1:five_prime_utr:002	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g13820.1:cds:001	Cp4.1LG08g13820.1:cds:001	CDS
Cp4.1LG08g13820.1:cds:002	Cp4.1LG08g13820.1:cds:002	CDS
Cp4.1LG08g13820.1:cds:003	Cp4.1LG08g13820.1:cds:003	CDS
Cp4.1LG08g13820.1:cds:004	Cp4.1LG08g13820.1:cds:004	CDS
Cp4.1LG08g13820.1:cds:005	Cp4.1LG08g13820.1:cds:005	CDS
Cp4.1LG08g13820.1:cds:006	Cp4.1LG08g13820.1:cds:006	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g13820.1:three_prime_utr:001	Cp4.1LG08g13820.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g13820.1	Cp4.1LG08g13820.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome