Cp4.1LG08g05900.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAGGCGAAACCAAAAATGGCAATTCTTCCTCGTCTTCCCGCCCGTCGGCCACCATGGTGAGAACGCGATGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTACGTTTTAGTTGACTTCTCCCTCAGTCGAACACTTTCTCATGTTTGATGATTTGTTTTCTGATTTTCTGTGTGTTCCTTCTCTCTTAGGTTTTTCTGTACGATTGGTGGCTCACAAAGGTTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAGTAAGACATTGCTTCCCCTAACTCTTTCATTTCAGCTTCGTATTCGTTTTCGTTGTTCTTCGGGAAATGCGTGGTATCTAATGAGATATAGTTAAGGCCATGCCATAATTGAGTGACTGAATATCGTTGCTAAAGATAATCTGTATCTATATTCCCTGGTTTATCTGTATTCTAAAATTTTATATTGATGTTAATTTGAGAGGAATTATACTATGACTTGGTGAAGTTTTGAAATTGATTGAAAACTAGATAATGAATTGGTGAAGATTTAAGACACTATTTCATTTTTCTCTAAGATTAATAGTTTGATGTTATTTATTTACCTCAATTGTTAATACTGGAAGCCATCCATGAAAAGTCTGGCATTGTAGAAAGGAGGAGTGAAACCTTAAGTTTAGAAGATTACTCAGGAAAAACATGTGCTATCGTGCTAGAATGGAGTCCTCTTCCATCCTTTACTTATTGGTTCCTCGCCATCATACAATCTGGAATTATAAGCCTCCTGACTTGGTGGTTGCTTGCAGTTTAAAGTTAAACATTCAGACAAGACATTGAGATATCATGTTATCTCCTTGTTGGTATGTTTTATGGGAGAAGAGCTGATCATAATTTTATGAGCTATTAGTTAGCCACAAATTTGTGGGGAAGGTCTTTGGTGTTTTTGGTTTCCAATTGGCATAAAATCATCAACGGATGTTGGTATCCTGCCCATAAAAAATATCCATCTGCTTTCAGGTTTCCTCTTACGAACATGGACCCAAAATTAATTCTTTGAGAAGGGAAATGATTAAAGATATTAATAAAACCACCATGGGTGATAAAGGGCTTAACGGGAATGAGTCCAAGCTATGGTGCCCACATACCTAGAATTGAATATGTTATTAGTTATCTTGACAACCAAATATAGTAGAATCAGACCGTTGTCTCGTGAAGTCAGTCGAAGTGCAAGCAAATGTAGACTTAGACACTCACGTGTATAAAAATAAAATAAAATAAAATTTGCCGAAGGAGCAGAAGTGAAACCCTTCACTTGTCATGAATACTCTTTTTTTTCCAAGACTGAGGAATTTAATTAATGATTGACCTTCCTTTCATTGTTCTGATTGTGTTAAAAGATAGTAGTTTTCATTATCTCGTACATTCGGATCGTATCTGTGCTGTTTCTTCTTCATTATTTTGTATACATGGTTTATTGCACCTCTGTTCTCTTTCGATTATGGGGATTAATGCTCTGTATTCAAAGATTTTTCCGATTCATTATTGCAGAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTATGTACGCAGACCATTGTTCTTATTTCTCCCAACTTTATGTTCTTGACCCGTTACTGATGGCTGAACATATAAACATATCCTGCCCTCCTGAATATTCTTGAAACTTAGGAAAATTAACGATATACAACTTGAGCAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTCAAGTGTATTAAAGGAAGTACTTCTCATCCTGACCATCCAGGTAGAAGCCATGATTTTGAAGCTGATTTAGACAATCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGGCCTCTTTATGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGACGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACAGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCAAGAGTTAAAAGTAGCTCAAATTATAAGTCAACAACCGATTTTACTTTTAGATTTGAAAAGGAAGTTGATGCAATCACAGATAAACCTGAGAGTAGAAGATCAAGTCTTAGGCTAAGGAACCAAAAGCGTCGATAGGTGTGGTATACTCCCAAGTTTTTGTGCAATGTTGGTATCCATTCCCTTAAAGATTGGTATTCAAATCAAGTATCCATTCCCTCACAATCTGATCTCAAATCGACTTCGACAGTTTTTTTTTTTTTTGTTCTTTTTTTCTTCAATTTGATTGATAAGATTAGGAAAAATGGACATCTTCCCACAGTTGTAGATATTTTTGTTTCTTATTGTTGTGTACGTATATGTTGTCAGTGTATGTTTATGGTACAAGCATCAGATTGCTCGCTGGAGGGTTGTGTATTATTTCTATGTACAAAGAAAGATGACAATCTCCTTTGGAGAAACAATAGGTTATTTTGGCTTTTGGGAAGGCATCTATGATCCTTCTAAAATTATGTGGAAGAGCTTTCTTGCTTTGAATTTCTCTCCCCTTTTAGTTTTCCTCTAATTGATTTGTGTGAAGACGAAATTTACTGTGTGTGGATGATGTGTTCAGGATCTGCCAGGACACCATATGGATGATGCTATCTAAATTGGCATGAACCACCTTGTCGACAATTCTGTTTGAATTTAAAAGATTTATTGATAAAGAAGTAAATGTAAATATATATAAGGAAAATAATCGAATTGAAAATTTGAAGATTCTCTTGCCAACCAGTGACATTGGGTCCAGTTTGTGATCATAATATCTTGAGAAAATGAAAGGCGTTTGGCTCGGACTTGAGACTAACAACCAACAAAATTGGCTAAATGTTATTTGGTAATGTAGTTACATCGATTTGGTCAATTTGATCTCAGGTTTTGAATGTAATATTTCTAGATCTCGCTTGATCTCAGGTTTTTGAATGTAATATTTTCAGGTCAAGGTAAAGTCGATTGATATCTAAGCAGAGTATTATTTGAGTGGTACTCTTGCTCAACAC TGAGGCGAAACCAAAAATGGCAATTCTTCCTCGTCTTCCCGCCCGTCGGCCACCATGGTGAGAACGCGATGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTTTTTCTGTACGATTGGTGGCTCACAAAGGTTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTCAAGTGTATTAAAGGAAGTACTTCTCATCCTGACCATCCAGGTAGAAGCCATGATTTTGAAGCTGATTTAGACAATCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGGCCTCTTTATGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGACGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACAGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCAAGAGTTAAAAGTAGCTCAAATTATAAGTCAACAACCGATTTTACTTTTAGATTTGAAAAGGAAGTTGATGCAATCACAGATAAACCTGAGAGTAGAAGATCAAGTCTTAGGCTAAGGAACCAAAAGCGTCGATAGGTGTGGTATACTCCCAAGTTTTTGTGCAATGTTGGTATCCATTCCCTTAAAGATTGGTATTCAAATCAAGTATCCATTCCCTCACAATCTGATCTCAAATCGACTTCGACAGTTTTTTTTTTTTTTGTTCTTTTTTTCTTCAATTTGATTGATAAGATTAGGAAAAATGGACATCTTCCCACAGTTGTAGATATTTTTGTTTCTTATTGTTGTGTACGTATATGTTGTCAGTGTATGTTTATGGTACAAGCATCAGATTGCTCGCTGGAGGGTTGTGTATTATTTCTATGTACAAAGAAAGATGACAATCTCCTTTGGAGAAACAATAGGTTATTTTGGCTTTTGGGAAGGCATCTATGATCCTTCTAAAATTATGTGGAAGAGCTTTCTTGCTTTGAATTTCTCTCCCCTTTTAGTTTTCCTCTAATTGATTTGTGTGAAGACGAAATTTACTGTGTGTGGATGATGTGTTCAGGATCTGCCAGGACACCATATGGATGATGCTATCTAAATTGGCATGAACCACCTTGTCGACAATTCTGTTTGAATTTAAAAGATTTATTGATAAAGAAGTAAATGTAAATATATATAAGGAAAATAATCGAATTGAAAATTTGAAGATTCTCTTGCCAACCAGTGACATTGGGTCCAGTTTGTGATCATAATATCTTGAGAAAATGAAAGGCGTTTGGCTCGGACTTGAGACTAACAACCAACAAAATTGGCTAAATGTTATTTGGTAATGTAGTTACATCGATTTGGTCAATTTGATCTCAGGTTTTGAATGTAATATTTCTAGATCTCGCTTGATCTCAGGTTTTTGAATGTAATATTTTCAGGTCAAGGTAAAGTCGATTGATATCTAAGCAGAGTATTATTTGAGTGGTACTCTTGCTCAACAC ATGGTGAGAACGCGATGCAAGTCCGCCGCTGCCACTCCCCACTCTATCCCCTTCAAGACCGACCGGCCGCCGATCGCCACCGCCATTACGCCGAAAACACCGCTTAGTTGTTCTACATCTATCATTCCTTCCTCACTCAAATCAGTTTTTCTGTACGATTGGTGGCTCACAAAGGTTGATGATGGCGAGGGCTTGGCTGTCGGAGGGTTTGCTTCCAGAGAAGGTGCTGGGGTTAGAGTATTTTATTCTGCAGCGATTTCTAAGAGACATGAAGCCAGCATTCTCGAGGCAATAGATGGCATTGTCATTACTGTCAGTGGCTTCATAAATAGATCACGAACGCTTGAAAATGGCTTTCCTCCGAAGGTGTACAATCATTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGACTATATGGGTTCTAGTTCGGATAAAAAATCCCAGTTCAAGTGTATTAAAGGAAGTACTTCTCATCCTGACCATCCAGGTAGAAGCCATGATTTTGAAGCTGATTTAGACAATCTTGCAGTTACTAGGTTGCGAGATCTCTTTTTGTCCTCCTGTGAAAAATCTAGTCATGGCCTCTTTATGACGAACCGAAATTCAAGTCGTAGTCCAACAAAAAAATTTGAATCTGGACTAGAAACCCTGAAAGGAAGACCTCAACGAGTGAATTCCTATCAATACGTTGACGAGCAAGGTTTCCGGGATGAGAGGAAGTATAGTGATGTAAAGGATCCATTGCACAGTAGTCAAGAAACTGATTCTACGGTGGAAATTGAACCCCAGAATCTAGGAAGCAGAAGTGTTTGCACAAGAAGCATGACCAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGCTCATATCAGACTCTCACAAGAGAAAAAAGGACCAGGAGAGTAACCCTTCATGTGAAAACTCTGGAAAGAGAACTGGACCAAGAGTTAAAAGTAGCTCAAATTATAAGTCAACAACCGATTTTACTTTTAGATTTGAAAAGGAAGTTGATGCAATCACAGATAAACCTGAGAGTAGAAGATCAAGTCTTAGGCTAAGGAACCAAAAGCGTCGATAG MVRTRCKSAAATPHSIPFKTDRPPIATAITPKTPLSCSTSIIPSSLKSVFLYDWWLTKVDDGEGLAVGGFASREGAGVRVFYSAAISKRHEASILEAIDGIVITVSGFINRSRTLENGFPPKVYNHFLLGFPFNWKDYMGSSSDKKSQFKCIKGSTSHPDHPGRSHDFEADLDNLAVTRLRDLFLSSCEKSSHGLFMTNRNSSRSPTKKFESGLETLKGRPQRVNSYQYVDEQGFRDERKYSDVKDPLHSSQETDSTVEIEPQNLGSRSVCTRSMTKLKNSSNRSKERLISDSHKRKKDQESNPSCENSGKRTGPRVKSSSNYKSTTDFTFRFEKEVDAITDKPESRRSSLRLRNQKRR Homology
BLAST of Cp4.1LG08g05900.1 vs. ExPASy Swiss-Prot
Match: Q8RWD7 (Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana OX=3702 GN=EMB1674 PE=2 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.7e-26 Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. ExPASy Swiss-Prot
Match: F4KCE9 (Kinetochore-associated protein KNL-2 homolog OS=Arabidopsis thaliana OX=3702 GN=KNL2 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.1e-12 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. NCBI nr
Match: XP_023539054.1 (uncharacterized protein LOC111799806 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 699 bits (1804), Expect = 1.43e-253 Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. NCBI nr
Match: XP_022972099.1 (uncharacterized protein LOC111470735 [Cucurbita maxima]) HSP 1 Score: 687 bits (1772), Expect = 1.08e-248 Identity = 353/359 (98.33%), Postives = 354/359 (98.61%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. NCBI nr
Match: XP_022932601.1 (uncharacterized protein LOC111439111 [Cucurbita moschata]) HSP 1 Score: 685 bits (1768), Expect = 4.38e-248 Identity = 353/359 (98.33%), Postives = 355/359 (98.89%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. NCBI nr
Match: KAG7029081.1 (Protein EMBRYO DEFECTIVE, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 682 bits (1759), Expect = 1.03e-246 Identity = 351/359 (97.77%), Postives = 354/359 (98.61%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. NCBI nr
Match: KAG6597640.1 (Protein EMBRYO DEFECTIVE 1674, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 675 bits (1741), Expect = 5.70e-244 Identity = 348/359 (96.94%), Postives = 353/359 (98.33%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. ExPASy TrEMBL
Match: A0A6J1IAH9 (uncharacterized protein LOC111470735 OS=Cucurbita maxima OX=3661 GN=LOC111470735 PE=4 SV=1) HSP 1 Score: 687 bits (1772), Expect = 5.20e-249 Identity = 353/359 (98.33%), Postives = 354/359 (98.61%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. ExPASy TrEMBL
Match: A0A6J1EWS9 (uncharacterized protein LOC111439111 OS=Cucurbita moschata OX=3662 GN=LOC111439111 PE=4 SV=1) HSP 1 Score: 685 bits (1768), Expect = 2.12e-248 Identity = 353/359 (98.33%), Postives = 355/359 (98.89%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. ExPASy TrEMBL
Match: A0A1S3BWZ5 (uncharacterized protein LOC103494524 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494524 PE=4 SV=1) HSP 1 Score: 368 bits (944), Expect = 7.08e-124 Identity = 201/299 (67.22%), Postives = 236/299 (78.93%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. ExPASy TrEMBL
Match: A0A1S3BXH8 (uncharacterized protein LOC103494524 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494524 PE=4 SV=1) HSP 1 Score: 364 bits (935), Expect = 1.59e-122 Identity = 201/299 (67.22%), Postives = 236/299 (78.93%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. ExPASy TrEMBL
Match: A0A5A7TRY3 (Mis18-binding protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003680 PE=4 SV=1) HSP 1 Score: 368 bits (944), Expect = 1.68e-115 Identity = 201/299 (67.22%), Postives = 236/299 (78.93%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. TAIR 10
Match: AT1G58210.1 (kinase interacting family protein ) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-27 Identity = 70/158 (44.30%), Postives = 93/158 (58.86%), Query Frame = 0
BLAST of Cp4.1LG08g05900.1 vs. TAIR 10
Match: AT5G02520.1 (CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 7.5e-14 Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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