Cp4.1LG05g03280.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG05g03280.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionubiquitin-conjugating enzyme E2 4-like
LocationCp4.1LG05: 1949654 .. 1951857 (-)
Sequence length1084
RNA-Seq ExpressionCp4.1LG05g03280.1
SyntenyCp4.1LG05g03280.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATGTAAGAGAGAGAGAGCTTGAATCACTACTTCCGTGTCTGAACCGCTTTTGCGGGTAGGAAACCTCATTTCTCTTCCTATCACTATATCTCTTCTTTCTCTTACCCTTTTCCTCTCAAACCCAAATCCAAAACCAAAACCATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGTAAGTTCTTCCATGCCTTCCGATTTGATTCTTCTCTCCTTCTTCTTCCTCCTTTTTCCCCTTTGACTCTGCTGATGTTCACATCAGGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTAAATCATCTATACCCATCTTTGATTTCTCTATTTTCTTTGCTTTTTTACTAATTCCTCTTCTTCTACTGCGCCCTTCTGGATTTCCCCTTTTTCAGATGCTTAACAACTCTCTTTGAATCGACCTGTTTAGTTCTTAATTGCCTGCGTTTGTTGAATTTCCCTTCTCAAATGAATCCCAGTTGATATAGACTGTTCTGGGCAATATGATTTTGGGTTATATGGATTATCTTATCTTATCCCTTTCTCTTTGTTTGCTTGTTTGGTTTGAAATTGGAAGGTCTTTACCAAGGAGGTGTGTGGAGGATTAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTGAGTTGACATCACTCACACTCTGAAACTTATTACATTGGTTCTTCATAGGGGTAGGGTCTTATCTTGTTCTGGGGATGATTGTTGACTGATATAGATGTTTTACGAATCGCAGGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGGTGGGAAACCATCCCTACTCTTATCTTTGTAGAGTTATAATGTTATCTGTTTTGTTGTATATATTATATCATGGTGATCAATGGTGTTTTGTTTGTGGAATTACAATGCTGCGACCGAGGAATTGTGATCTAATTCGGGTGTTTTTCGTTGTATAGACCTTGTAAATGTTTTCGAAGTGTTTCTTCCACAACTTCTCCTGTATCCCAACCCGTCGGACCCGTTGAACGGCGAAGCTGCTGCAGTAATGATGCGTGATCGCGCTGCATATGAGCAAAGAGTAAAAGGTACTTCTATTGAAGATTTGGTAGTTTAAGCTAAGTTTAAGCTAAATACAAAACTAGATTTAGTAGCCGAACTTCACCAGTAGACAAATTCAGATTTTAGTGGCGGTCACCATTATGCCTGTGTGATCTAGATCACACCGATTGGGAAGGAGAACGAAACATTCTTTACAAGGATGCGGAAACCTCTCCTTAGCAAACTTGTTTTAAAAACCTCGAGGGAAAACTTGAAAGGAAAAGCTTAGAGAGGATATATCTACTAGCGGTGTGCTTGGGGTCAAACCCTTCTGTGTTCTGCATCCGTGATGATGATTGTGCATCTAATGGTTATAAACTTAGTAGGCATGTTATACTAGTCGTATCGGTTAACTTCCTCACCCCGACACACAAAGTTCAAACCTCTACAGGGTTCAAGACACGTACAAACCCCGTCCCGGCTGTTCTTTTCCTTGTTTTTCATTTGGGTTGTGTATGTATATGTACAGAATACTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGGTGTTGGTGAGGAGAAATCCAGTGATGAAGAGGTGAGTGAAGATGAGTACTCCTCAGATGATGAGGAGATGGCAGGCCAAGCTGATGCTTGACTGGAAGGAAAACCATATCAACCCTCTTCTGTACATGATTCAAAAACTGGTTTACCATCAAAATTGAAAGCTATGGAGAAGGTTCCTAGCTCCTCTACTGTCTCTTATTTTCATGATAGTTGTTGTGTACATTAATCAAACTATGATATAATGTTTCATATATTGTCATTTACCATTTAATCTATAAACCAATTCTCTTGGGTTTTCTCCTTTTTCTCAACAGTTTCACGGTCTCTCCATCTCTAACGCAACGTTAGGGATGTAAGTGAGTCGGGTTGGTTCGGATATGGAGTAAAGCTCTGGTCGGAAGCTCCTGTATTCAATTTAAAAACTGAATTTTGTGCTACTGTACTTGGTTATTTCGAAAGCCCCGGTCGCGTTGTGTCGTC

mRNA sequence

AGATGTAAGAGAGAGAGAGCTTGAATCACTACTTCCGTGTCTGAACCGCTTTTGCGGGTAGGAAACCTCATTTCTCTTCCTATCACTATATCTCTTCTTTCTCTTACCCTTTTCCTCTCAAACCCAAATCCAAAACCAAAACCATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTCTTTACCAAGGAGGTGTGTGGAGGATTAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGACCTTGTAAATGTTTTCGAAGTGTTTCTTCCACAACTTCTCCTGTATCCCAACCCGTCGGACCCGTTGAACGGCGAAGCTGCTGCAGTAATGATGCGTGATCGCGCTGCATATGAGCAAAGAGTAAAAGAATACTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGGTGTTGGTGAGGAGAAATCCAGTGATGAAGAGGTGAGTGAAGATGAGTACTCCTCAGATGATGAGGAGATGGCAGGCCAAGCTGATGCTTGACTGGAAGGAAAACCATATCAACCCTCTTCTGTACATGATTCAAAAACTGGTTTACCATCAAAATTGAAAGCTATGGAGAAGGTTCCTAGCTCCTCTACTGTCTCTTATTTTCATGATAGTTGTTGTGTACATTAATCAAACTATGATATAATGTTTCATATATTGTCATTTACCATTTAATCTATAAACCAATTCTCTTGGGTTTTCTCCTTTTTCTCAACAGTTTCACGGTCTCTCCATCTCTAACGCAACGTTAGGGATGTAAGTGAGTCGGGTTGGTTCGGATATGGAGTAAAGCTCTGGTCGGAAGCTCCTGTATTCAATTTAAAAACTGAATTTTGTGCTACTGTACTTGGTTATTTCGAAAGCCCCGGTCGCGTTGTGTCGTC

Coding sequence (CDS)

ATGTCTTCTCCCAGCAAGCGACGCGAAATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAACCATCAATGATAGCATGCAAGAGTTCTATGTCGACTTCCATGGTCCTAAAGACAGTCTTTACCAAGGAGGTGTGTGGAGGATTAGGGTGGAGTTGCCAGATGCTTATCCTTACAAGTCACCTTCAATTGGCTTCATCAACAAAATTTATCATCCAAATGTTGATGAAATGTCGGGCTCGGTTTGTTTGGATGTTATCAACCAGACATGGAGCCCTATGTTTGACCTTGTAAATGTTTTCGAAGTGTTTCTTCCACAACTTCTCCTGTATCCCAACCCGTCGGACCCGTTGAACGGCGAAGCTGCTGCAGTAATGATGCGTGATCGCGCTGCATATGAGCAAAGAGTAAAAGAATACTGTGAGAAATATGCAAAGCCAGAAGACATTGGAGGTGTTGGTGAGGAGAAATCCAGTGATGAAGAGGTGAGTGAAGATGAGTACTCCTCAGATGATGAGGAGATGGCAGGCCAAGCTGATGCTTGA

Protein sequence

MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQADA
Homology
[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy Swiss-Prot
Match: P42748 (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2)

HSP 1 Score: 312.4 bits (799), Expect = 3.4e-84
Identity = 153/176 (86.93%), Postives = 165/176 (93.75%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMD+MKLMMSDYKVETIND MQEFYV+F+GPKDSLYQGGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEE 177
           NGEAAA+MMRDR AYEQRVKEYCEKYAKP   G   E+KSSDEE+SE+EY SD+E+
Sbjct: 121 NGEAAALMMRDRPAYEQRVKEYCEKYAKP---GEGSEDKSSDEELSEEEYGSDNED 173

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy Swiss-Prot
Match: P42749 (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 1.0e-80
Identity = 152/187 (81.28%), Postives = 164/187 (87.70%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVE IND MQEF+V+F GPKDS+Y+GGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSS-----DDE 180
           NGEAAA+MMRDR  YEQRVKEYCEKYAKP       EE SSD+E+SEDEY+S     DD 
Sbjct: 121 NGEAAALMMRDRPTYEQRVKEYCEKYAKPR---ADTEEMSSDDEMSEDEYASDGDDEDDV 180

Query: 181 EMAGQAD 183
            +AG+ D
Sbjct: 181 AIAGKLD 184

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy Swiss-Prot
Match: P16577 (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.8e-80
Identity = 147/183 (80.33%), Postives = 163/183 (89.07%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKV+ IND M EF+V FHGPKDS+YQGGVW++RVEL +AYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVN+FEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDE-YSSDDEEMAG 180
           NGEAA++MMRD+ AYE +VKEYCE+YAKPEDI    EE+ SDEE+S+ E Y S DE + G
Sbjct: 121 NGEAASLMMRDKNAYENKVKEYCERYAKPEDISPEEEEEESDEELSDAEGYDSGDEAIMG 180

Query: 181 QAD 183
            AD
Sbjct: 181 HAD 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy Swiss-Prot
Match: P42750 (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 SV=2)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-76
Identity = 136/182 (74.73%), Postives = 158/182 (86.81%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           M+SPSKRREMD+MKLMMSDYKV+T+ND +Q FYV FHGP DSLYQGGVW+I+VELP+AYP
Sbjct: 1   MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP 
Sbjct: 61  YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPF 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAA+++MRDRAAYE +VKEYCEKYAKPE+I    ++  S  E   D    DD+E+ G+
Sbjct: 121 NGEAASLLMRDRAAYELKVKEYCEKYAKPEEILSDDDDDDSMSEDGSDSDDDDDDEIVGK 180

Query: 181 AD 183
           AD
Sbjct: 181 AD 182

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy Swiss-Prot
Match: Q9P7R4 (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubc8 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.0e-59
Identity = 109/183 (59.56%), Postives = 143/183 (78.14%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSP +R E D+MKL+MSDY+V  +ND+MQEFYV FHGP ++ Y GG+W++ VELP  YP
Sbjct: 1   MSSPRRRIETDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           +KSPSIGF+N+I+HPN+DE+SGSVCLDVINQTWSPMFD++N+FEVFLPQLL YPN SDPL
Sbjct: 61  WKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAA+++R+   Y  +V++Y  +YA  ED      + S D+ +S  +  S D E+AG 
Sbjct: 121 NGEAAALLLREPNTYYAKVRDYIARYANKEDADITLNDSSDDDTMSSIDTESGD-EIAGP 180

Query: 181 ADA 184
            D+
Sbjct: 181 MDS 182

[Close]
BLAST of Cp4.1LG05g03280.1 vs. NCBI nr
Match: XP_022958690.1 (ubiquitin-conjugating enzyme E2 4-like [Cucurbita moschata] >XP_023534777.1 ubiquitin-conjugating enzyme E2 4-like [Cucurbita pepo subsp. pepo] >KAG6606082.1 Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (941), Expect = 6.52e-128
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ
Sbjct: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. NCBI nr
Match: XP_022996146.1 (ubiquitin-conjugating enzyme E2 4-like [Cucurbita maxima])

HSP 1 Score: 365 bits (937), Expect = 2.66e-127
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. NCBI nr
Match: KAG7036029.1 (Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (937), Expect = 2.66e-127
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSS+DEEMAGQ
Sbjct: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSEDEEMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. NCBI nr
Match: XP_004143895.1 (ubiquitin-conjugating enzyme E2 4 [Cucumis sativus] >XP_008437307.1 PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Cucumis melo] >XP_038906796.1 ubiquitin-conjugating enzyme E2 4-like [Benincasa hispida] >KAA0042743.1 ubiquitin-conjugating enzyme E2 4-like isoform X1 [Cucumis melo var. makuwa] >KGN50082.1 hypothetical protein Csa_000238 [Cucumis sativus])

HSP 1 Score: 352 bits (903), Expect = 4.06e-122
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIG V EEKSSDEE+SED+YSS DE MAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGAVPEEKSSDEELSEDDYSSGDEAMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. NCBI nr
Match: XP_022159827.1 (ubiquitin-conjugating enzyme E2 4-like [Momordica charantia])

HSP 1 Score: 350 bits (898), Expect = 2.35e-121
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVE INDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIG V EEKSSDEE+SED+Y+S DE+MAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGAVPEEKSSDEELSEDDYASSDEDMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy TrEMBL
Match: A0A6J1H475 (ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita moschata OX=3662 GN=LOC111459841 PE=3 SV=1)

HSP 1 Score: 367 bits (941), Expect = 3.16e-128
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ
Sbjct: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy TrEMBL
Match: A0A6J1K3W2 (ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491458 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.29e-127
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy TrEMBL
Match: A0A5A7THI1 (Ubiquitin-conjugating enzyme E2 4-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002420 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.97e-122
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIG V EEKSSDEE+SED+YSS DE MAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGAVPEEKSSDEELSEDDYSSGDEAMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy TrEMBL
Match: A0A0A0KNV9 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152970 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.97e-122
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIG V EEKSSDEE+SED+YSS DE MAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGAVPEEKSSDEELSEDDYSSGDEAMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy TrEMBL
Match: A0A1S3AUA7 (ubiquitin-conjugating enzyme E2 4-like OS=Cucumis melo OX=3656 GN=LOC103482765 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.97e-122
Identity = 175/183 (95.63%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPSIGF+NKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL
Sbjct: 61  YKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAAAVMMRDR AYEQRVKEYCEKYAKPEDIG V EEKSSDEE+SED+YSS DE MAGQ
Sbjct: 121 NGEAAAVMMRDRTAYEQRVKEYCEKYAKPEDIGAVPEEKSSDEELSEDDYSSGDEAMAGQ 180

Query: 181 ADA 183
           ADA
Sbjct: 181 ADA 183

[Close]
BLAST of Cp4.1LG05g03280.1 vs. TAIR 10
Match: AT5G41340.1 (ubiquitin conjugating enzyme 4 )

HSP 1 Score: 312.4 bits (799), Expect = 2.4e-85
Identity = 153/176 (86.93%), Postives = 165/176 (93.75%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMD+MKLMMSDYKVETIND MQEFYV+F+GPKDSLYQGGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GFI KIYHPNVDE+SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEE 177
           NGEAAA+MMRDR AYEQRVKEYCEKYAKP   G   E+KSSDEE+SE+EY SD+E+
Sbjct: 121 NGEAAALMMRDRPAYEQRVKEYCEKYAKP---GEGSEDKSSDEELSEEEYGSDNED 173

[Close]
BLAST of Cp4.1LG05g03280.1 vs. TAIR 10
Match: AT1G63800.1 (ubiquitin-conjugating enzyme 5 )

HSP 1 Score: 300.8 bits (769), Expect = 7.3e-82
Identity = 152/187 (81.28%), Postives = 164/187 (87.70%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           MSSPSKRREMDLMKLMMSDYKVE IND MQEF+V+F GPKDS+Y+GGVW+IRVELPDAYP
Sbjct: 1   MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GFI KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPL
Sbjct: 61  YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPL 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSS-----DDE 180
           NGEAAA+MMRDR  YEQRVKEYCEKYAKP       EE SSD+E+SEDEY+S     DD 
Sbjct: 121 NGEAAALMMRDRPTYEQRVKEYCEKYAKPR---ADTEEMSSDDEMSEDEYASDGDDEDDV 180

Query: 181 EMAGQAD 183
            +AG+ D
Sbjct: 181 AIAGKLD 184

[Close]
BLAST of Cp4.1LG05g03280.1 vs. TAIR 10
Match: AT2G46030.1 (ubiquitin-conjugating enzyme 6 )

HSP 1 Score: 287.3 bits (734), Expect = 8.4e-78
Identity = 136/182 (74.73%), Postives = 158/182 (86.81%), Query Frame = 0 

Query: 1   MSSPSKRREMDLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYP 60
           M+SPSKRREMD+MKLMMSDYKV+T+ND +Q FYV FHGP DSLYQGGVW+I+VELP+AYP
Sbjct: 1   MASPSKRREMDMMKLMMSDYKVDTVNDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYP 60

Query: 61  YKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPL 120
           YKSPS+GF+NKIYHPNVDE SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP 
Sbjct: 61  YKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPF 120

Query: 121 NGEAAAVMMRDRAAYEQRVKEYCEKYAKPEDIGGVGEEKSSDEEVSEDEYSSDDEEMAGQ 180
           NGEAA+++MRDRAAYE +VKEYCEKYAKPE+I    ++  S  E   D    DD+E+ G+
Sbjct: 121 NGEAASLLMRDRAAYELKVKEYCEKYAKPEEILSDDDDDDSMSEDGSDSDDDDDDEIVGK 180

Query: 181 AD 183
           AD
Sbjct: 181 AD 182

[Close]
BLAST of Cp4.1LG05g03280.1 vs. TAIR 10
Match: AT1G64230.1 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 101.7 bits (252), Expect = 6.5e-22
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 0 

Query: 11  DLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYPYKSPSIGFIN 70
           DL K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P + F  
Sbjct: 12  DLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRT 71

Query: 71  KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAAVMMR 130
           K++HPNV+  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   
Sbjct: 72  KVFHPNVNS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKT 131

Query: 131 DRAAYEQRVKEYCEKYA 148
           DRA YE   + + +KYA
Sbjct: 132 DRAKYESTARSWTQKYA 146

[Close]
BLAST of Cp4.1LG05g03280.1 vs. TAIR 10
Match: AT1G64230.2 (ubiquitin-conjugating enzyme 28 )

HSP 1 Score: 101.7 bits (252), Expect = 6.5e-22
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 0 

Query: 11  DLMKLMMSDYKVETINDSMQEFYVDFHGPKDSLYQGGVWRIRVELPDAYPYKSPSIGFIN 70
           DL K   +      + + M  +     GP DS Y GGV+ + +  P  YP+K P + F  
Sbjct: 12  DLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRT 71

Query: 71  KIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAAVMMR 130
           K++HPNV+  +GS+CLD++ + WSP   +  V  + +  LL  PNP DPL  E A +   
Sbjct: 72  KVFHPNVNS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKT 131

Query: 131 DRAAYEQRVKEYCEKYA 148
           DRA YE   + + +KYA
Sbjct: 132 DRAKYESTARSWTQKYA 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g03280.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427483.4e-8486.93Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 S... [more]
P427491.0e-8081.28Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 S... [more]
P165771.8e-8080.33Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum OX=4565 GN=UBC4 PE=1... [more]
P427501.2e-7674.73Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana OX=3702 GN=UBC6 PE=2 S... [more]
Q9P7R41.0e-5959.56Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
BLAST of Cp4.1LG05g03280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958690.16.52e-128100.00ubiquitin-conjugating enzyme E2 4-like [Cucurbita moschata] >XP_023534777.1 ubiq... [more]
XP_022996146.12.66e-12799.45ubiquitin-conjugating enzyme E2 4-like [Cucurbita maxima][more]
KAG7036029.12.66e-12799.45Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_004143895.14.06e-12295.63ubiquitin-conjugating enzyme E2 4 [Cucumis sativus] >XP_008437307.1 PREDICTED: u... [more]
XP_022159827.12.35e-12194.54ubiquitin-conjugating enzyme E2 4-like [Momordica charantia][more]
BLAST of Cp4.1LG05g03280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H4753.16e-128100.00ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1K3W21.29e-12799.45ubiquitin-conjugating enzyme E2 4-like OS=Cucurbita maxima OX=3661 GN=LOC1114914... [more]
A0A5A7THI11.97e-12295.63Ubiquitin-conjugating enzyme E2 4-like isoform X1 OS=Cucumis melo var. makuwa OX... [more]
A0A0A0KNV91.97e-12295.63UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152970 PE... [more]
A0A1S3AUA71.97e-12295.63ubiquitin-conjugating enzyme E2 4-like OS=Cucumis melo OX=3656 GN=LOC103482765 P... [more]
BLAST of Cp4.1LG05g03280.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41340.12.4e-8586.93ubiquitin conjugating enzyme 4 [more]
AT1G63800.17.3e-8281.28ubiquitin-conjugating enzyme 5 [more]
AT2G46030.18.4e-7874.73ubiquitin-conjugating enzyme 6 [more]
AT1G64230.16.5e-2236.50ubiquitin-conjugating enzyme 28 [more]
AT1G64230.26.5e-2236.50ubiquitin-conjugating enzyme 28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 4..148
e-value: 7.2E-51
score: 185.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..183
NoneNo IPR availablePANTHERPTHR24068:SF321UBIQUITIN-CONJUGATING ENZYME E2-23 KDAcoord: 3..182
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 3..182
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 10..142
e-value: 7.4E-39
score: 132.6
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 1..148
score: 42.102623
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 7..143
e-value: 2.10588E-51
score: 159.675
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 1..156
e-value: 1.7E-50
score: 172.8
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 4..148
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBC_1coord: 73..89

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g03280Cp4.1LG05g03280gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03280.1:three_prime_utr:001Cp4.1LG05g03280.1:three_prime_utr:001three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03280.1:exon:006Cp4.1LG05g03280.1:exon:006exon
Cp4.1LG05g03280.1:exon:005Cp4.1LG05g03280.1:exon:005exon
Cp4.1LG05g03280.1:exon:004Cp4.1LG05g03280.1:exon:004exon
Cp4.1LG05g03280.1:exon:003Cp4.1LG05g03280.1:exon:003exon
Cp4.1LG05g03280.1:exon:002Cp4.1LG05g03280.1:exon:002exon
Cp4.1LG05g03280.1:exon:001Cp4.1LG05g03280.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03280.1:cds:006Cp4.1LG05g03280.1:cds:006CDS
Cp4.1LG05g03280.1:cds:005Cp4.1LG05g03280.1:cds:005CDS
Cp4.1LG05g03280.1:cds:004Cp4.1LG05g03280.1:cds:004CDS
Cp4.1LG05g03280.1:cds:003Cp4.1LG05g03280.1:cds:003CDS
Cp4.1LG05g03280.1:cds:002Cp4.1LG05g03280.1:cds:002CDS
Cp4.1LG05g03280.1:cds:001Cp4.1LG05g03280.1:cds:001CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03280.1:five_prime_utr:001Cp4.1LG05g03280.1:five_prime_utr:001five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03280.1Cp4.1LG05g03280.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0061631 ubiquitin conjugating enzyme activity