Cp4.1LG04g03500.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTGACTCAACCATGGTTAACCTCAATAAATAAAATAAAATAAAAGCCATTTACATTTAAAAAATAAAAAATAAAACTCAGCTATAAGAATAGCCTTGAGAATTGAGCAGCCCAGCCCAAGATCCGATCAATTGCTCTGCTCAGAGACTCTGAGAAGAAAGCTCTGTGGAACCATGGGCGCTCTTCTCAAGCTCGTTGACGCTCTATTGTTCCTCGCATTTCTCGTACTTGCCGTCGTTGTGCCTTTAATCGATTTCCAGGAGGTATTGCCTAAAAGCCTTTACCCTGATTCTGTAATCGATCTCAAGAGGTGGTACGTCGCCCGATCGGGGGATTATTTAATGGCCGAGGCTCCTCATTTCGTCGTTGGCCTTATTTGGTTCGAGCTTCTTTTTCAATGGCCTCTTTTGTTTCTCAATCTCTATGCCTTCTTCAGCTCCAAGGCTTGGTACAGGACCACTTGCTTGATCTATGGCGTTTCTCTCGTGTCTTCCATGGTATTTTTCTGTTCCTGTTCGGATTAATTTGGTTTTTGATTGATGGAATTTGTTCATAGCCTGTTGATTTTATCTTTGTTTGATTGAATGTATCTATTTTAGGTTAGGATTGAGTAGGGAGATGATTTTGGATATGTTTAAGCATTTGGCGGAGTGGACGATGAATTTGAAGTTAGTAGAATTTATTCCAGTCTTGTAGAGATTCAATAGACATAACTTGGTTGTTATTCAGCTTTTCTAGACCATTTTTAGAAGAATGTCATTTCTAGATTCTTGATATATGTAGTTGATGATGCTGATAGAAGTTTTGGTTTCTTTTTTGATTTTAAGTTCAATAATATGGAGACCAGGATTCAATCCTGTAATCTCTTGGTTGATGGTATGTGTTAGGAATTACAAATCTCCACAATAGTATGATATTGTACACTTTGAGCATAAACTCTCATGGTTTTGTTTTTGGTCGTTGTATTCCTTATTTATAAACTCATGATCAGCTCCTTAATTAGTCGATGTGGGGCTCATCTCCCAACAATCTCTCTCATCGAACAAAGTACACCATAGAGCCTCCTCGGAGGCCTATGGAGCCTTCGAACAACCTCCCCTTAATCGAGACTCGACTCCTTCTCTAGAGCCTCAAACAAAATACACCCTTTGTTCGACACTTGAATCACTTTTGACTACACCTTAGAGACTCAACTTCTTTGTTCAACATTTGAGGAAACCACGAACCTCCACAATGGTATGATATTGTCCACATTGAGAACAAACTCTCGTGGTTTTGCTTTTAATTTTTCCAAAAGGGCTCATACCAATGGAGATGTATTCTTTACTTATAAACCCATGATCAATCTCTTAATTAGTCGATGTGGACTCTTGTACCAACAGTATGTGCTTTAACTAGCTGAATAATGCTCGGGTTGACCTAATCGAAATAATAGTTAGGTGGGATAGCTTTGTATGATGTTTTTAATTTCATAAGCTAGTATTGAACTAGCTTGGGAACTGCATTCTTGTCAATAAACTAAGGATTCAACATCAGACTTTTGGCTTTAAATGGTGCATTTGAGATAGCTAACTGCAAGATAAAAAGGATTTTTCTGCTTCGTTTGTTAACCTTCTTGTAGGGATACGCTAGTTTCTATATCATTTCCTTCAGAGAAATTTTACTTGTATTGAATCACATTATCTGGCTGTGTGATTTCAGTCTGCTGTGATGGGTGAAGTGGTTGGATCAAACCGGGCATCTAATACTCTGTTGACAATCTACTGGCCCTTCATGGGTTTGGGGGTGTTGGCCGTGCTACGCGGGCTCGTGCCATGCTCGAGCAAGGCTACGATCAACGGACCCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGAAGTGCCATCCTAGATCGCCAACGGTCTGTCTGTCCCGACCGAGCATATCACATTGTCGGACTGAGGATGTTGGTTCTTTAGGTAATGGTGCAACTCTCTCTTTTAACCTTCTAGCAGTCTTTCATTGTATGAGTGGTAATGGTTCGAATGAGCTTGATTTTTTAGTTTGATCCAATTCTTAGAGGCTCATTTGGTTGAAATATTTGATCGTTTTAAGAATAAAATTGAGTTAAGCCGAATCGAATTACATGAATGGTATTAATCCTTTTTTTAGCATTCGTATCACGATTTTACCATGGCTAAATTTTAGAGAC TTTTGACTCAACCATGGTTAACCTCAATAAATAAAATAAAATAAAAGCCATTTACATTTAAAAAATAAAAAATAAAACTCAGCTATAAGAATAGCCTTGAGAATTGAGCAGCCCAGCCCAAGATCCGATCAATTGCTCTGCTCAGAGACTCTGAGAAGAAAGCTCTGTGGAACCATGGGCGCTCTTCTCAAGCTCGTTGACGCTCTATTGTTCCTCGCATTTCTCGTACTTGCCGTCGTTGTGCCTTTAATCGATTTCCAGGAGGTATTGCCTAAAAGCCTTTACCCTGATTCTGTAATCGATCTCAAGAGGTGGTACGTCGCCCGATCGGGGGATTATTTAATGGCCGAGGCTCCTCATTTCGTCGTTGGCCTTATTTGGTTCGAGCTTCTTTTTCAATGGCCTCTTTTGTTTCTCAATCTCTATGCCTTCTTCAGCTCCAAGGCTTGGTACAGGACCACTTGCTTGATCTATGGCGTTTCTCTCGTGTCTTCCATGTCTGCTGTGATGGGTGAAGTGGTTGGATCAAACCGGGCATCTAATACTCTGTTGACAATCTACTGGCCCTTCATGGGTTTGGGGGTGTTGGCCGTGCTACGCGGGCTCGTGCCATGCTCGAGCAAGGCTACGATCAACGGACCCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGAAGTGCCATCCTAGATCGCCAACGGTCTGTCTGTCCCGACCGAGCATATCACATTGTCGGACTGAGGATGTTGGTTCTTTAGGTAATGGTGCAACTCTCTCTTTTAACCTTCTAGCAGTCTTTCATTGTATGAGTGGTAATGGTTCGAATGAGCTTGATTTTTTAGTTTGATCCAATTCTTAGAGGCTCATTTGGTTGAAATATTTGATCGTTTTAAGAATAAAATTGAGTTAAGCCGAATCGAATTACATGAATGGTATTAATCCTTTTTTTAGCATTCGTATCACGATTTTACCATGGCTAAATTTTAGAGAC ATGGGCGCTCTTCTCAAGCTCGTTGACGCTCTATTGTTCCTCGCATTTCTCGTACTTGCCGTCGTTGTGCCTTTAATCGATTTCCAGGAGGTATTGCCTAAAAGCCTTTACCCTGATTCTGTAATCGATCTCAAGAGGTGGTACGTCGCCCGATCGGGGGATTATTTAATGGCCGAGGCTCCTCATTTCGTCGTTGGCCTTATTTGGTTCGAGCTTCTTTTTCAATGGCCTCTTTTGTTTCTCAATCTCTATGCCTTCTTCAGCTCCAAGGCTTGGTACAGGACCACTTGCTTGATCTATGGCGTTTCTCTCGTGTCTTCCATGTCTGCTGTGATGGGTGAAGTGGTTGGATCAAACCGGGCATCTAATACTCTGTTGACAATCTACTGGCCCTTCATGGGTTTGGGGGTGTTGGCCGTGCTACGCGGGCTCGTGCCATGCTCGAGCAAGGCTACGATCAACGGACCCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGA MGALLKLVDALLFLAFLVLAVVVPLIDFQEVLPKSLYPDSVIDLKRWYVARSGDYLMAEAPHFVVGLIWFELLFQWPLLFLNLYAFFSSKAWYRTTCLIYGVSLVSSMSAVMGEVVGSNRASNTLLTIYWPFMGLGVLAVLRGLVPCSSKATINGPRPSNGRKKRA Homology
BLAST of Cp4.1LG04g03500.1 vs. ExPASy Swiss-Prot
Match: Q6DFQ5 (Sigma intracellular receptor 2 OS=Xenopus tropicalis OX=8364 GN=tmem97 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10 Identity = 43/154 (27.92%), Postives = 76/154 (49.35%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy Swiss-Prot
Match: Q3MHW7 (Sigma intracellular receptor 2 OS=Bos taurus OX=9913 GN=TMEM97 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07 Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy Swiss-Prot
Match: Q5BJF2 (Sigma intracellular receptor 2 OS=Homo sapiens OX=9606 GN=TMEM97 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.4e-06 Identity = 37/111 (33.33%), Postives = 57/111 (51.35%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy Swiss-Prot
Match: Q4R8A8 (Sigma intracellular receptor 2 OS=Macaca fascicularis OX=9541 GN=Tmem97 PE=2 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 3.4e-06 Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: XP_023530196.1 (sigma intracellular receptor 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 320 bits (821), Expect = 3.57e-110 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: XP_022930653.1 (sigma intracellular receptor 2-like [Cucurbita moschata] >KAG7022872.1 Transmembrane protein 97 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 302 bits (773), Expect = 7.45e-103 Identity = 155/166 (93.37%), Postives = 158/166 (95.18%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: XP_022988976.1 (sigma intracellular receptor 2-like [Cucurbita maxima]) HSP 1 Score: 300 bits (768), Expect = 4.31e-102 Identity = 154/166 (92.77%), Postives = 158/166 (95.18%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: KAG6589170.1 (Sigma intracellular receptor 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 300 bits (767), Expect = 6.12e-102 Identity = 154/166 (92.77%), Postives = 157/166 (94.58%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: XP_022952624.1 (sigma intracellular receptor 2-like [Cucurbita moschata]) HSP 1 Score: 260 bits (664), Expect = 3.06e-86 Identity = 128/166 (77.11%), Postives = 151/166 (90.96%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy TrEMBL
Match: A0A6J1EVW1 (sigma intracellular receptor 2-like OS=Cucurbita moschata OX=3662 GN=LOC111437055 PE=4 SV=1) HSP 1 Score: 302 bits (773), Expect = 3.61e-103 Identity = 155/166 (93.37%), Postives = 158/166 (95.18%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy TrEMBL
Match: A0A6J1JIQ0 (sigma intracellular receptor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486176 PE=4 SV=1) HSP 1 Score: 300 bits (768), Expect = 2.09e-102 Identity = 154/166 (92.77%), Postives = 158/166 (95.18%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy TrEMBL
Match: A0A6J1GM86 (sigma intracellular receptor 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455258 PE=4 SV=1) HSP 1 Score: 260 bits (664), Expect = 1.48e-86 Identity = 128/166 (77.11%), Postives = 151/166 (90.96%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy TrEMBL
Match: A0A6J1HVX1 (sigma intracellular receptor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468330 PE=4 SV=1) HSP 1 Score: 257 bits (656), Expect = 2.45e-85 Identity = 127/166 (76.51%), Postives = 150/166 (90.36%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. ExPASy TrEMBL
Match: A0A0A0K5K2 (EXPERA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044230 PE=4 SV=1) HSP 1 Score: 242 bits (617), Expect = 2.13e-79 Identity = 121/166 (72.89%), Postives = 142/166 (85.54%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. TAIR 10
Match: AT2G32380.1 (Transmembrane protein 97, predicted ) HSP 1 Score: 172.2 bits (435), Expect = 3.6e-43 Identity = 87/168 (51.79%), Postives = 124/168 (73.81%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. TAIR 10
Match: AT1G05210.1 (Transmembrane protein 97, predicted ) HSP 1 Score: 171.8 bits (434), Expect = 4.7e-43 Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. TAIR 10
Match: AT1G05220.1 (Transmembrane protein 97, predicted ) HSP 1 Score: 143.7 bits (361), Expect = 1.4e-34 Identity = 72/150 (48.00%), Postives = 106/150 (70.67%), Query Frame = 0
BLAST of Cp4.1LG04g03500.1 vs. TAIR 10
Match: AT1G05220.2 (Transmembrane protein 97, predicted ) HSP 1 Score: 143.7 bits (361), Expect = 1.4e-34 Identity = 72/150 (48.00%), Postives = 106/150 (70.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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