Cp4.1LG02g08970.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g08970.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Uracil-DNA glycosylase
Location	Cp4.1LG02: 6309188 .. 6316355 (+)
Sequence length	1515
RNA-Seq Expression	Cp4.1LG02g08970.1
Synteny	Cp4.1LG02g08970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGACGCATATCCCATAGGCTACGATCAAATTTCAAACAAGCGGGGAGAGTGGAAAGCTTTTAGCGGATTCTCTGTTGGTTCCCGCCATTAAAGCCTGCTCCACCTCCACTCTACCGGAGCAACCAGACCCAAAATGGCTTCCTTCTCGCCTTCACTTAAATCCAAAACCAGAACCCTAATCGACATCTTCCAGCCAGCGCTTTCCAAACGCTTAAAAACCTCACAGACGCTGAAAACCCTTGCAACCACGGACGACAAATGCGATTCAGAGCTCACATTGGCTTCCTCTTCGATGGACATCTCTTCCTCTCAGAAATCCCGCATGGAAACCAACAAATGGTTGGCCAGATCGAAGCGCAATCTCAAAATTTCCTCAGATAGGGTTTCCAAATGGGAGAATGGATGTGTGAAGTTGGAGGAGCTTTTGGTGGACGAGACATGGTTCGAAGCCCTTCCCGGAGAGTTTGAGAAGCCCTATGCTCTTAACCTCTGCAAGTTCGTAGAGACGGAGATTTGCAGCAGCGGTGTCCCTGTTTATCCTCCTCCCTCTTTGATCTTTAATGCTCTGAATTCTACCCCTTTCGATAGGGTGAAAGTTGTTATTCTCGGTCAAGATCCTTATCATGGGCCTGGTCAAGCTATGGGTCTTTCTTTTTCTGTTCCTGAAGGAGTTAAAATCCCATCAAGTCTTCTCAACATATTCAAGGAACTGAGGGAAGATCTTGGTTGTTCCATTCCATCCCACGGAAATCTCGAGAAATGGGCTGTTCAGGTGCTGTTGTCTCTCATCTCTTTATTCTAAATACTTAGAAATGCATACTTAGATGTAGCTACTTCTAATGTGTTGGGGCTACAGAAATGCTACCCATAAAGATCTTGCTTATTTTTCATTAGATGAAAGATATGTAAATATAGGTTTGGGGTAGATGGATTATATAATAGATATGGTTCATCACAAGGTTCGGATTTTGGTGACTGCTAAGGGAATGAAAAAATATTTTCTGAAATCGGGTGCCTTTTCTTGAATTAAGAACACAAAGATAACTAATAAGCTATGCTGGTTTCAAAATATATATTTTTTAAAGTCATTAATTCAAGTTGGAAATTTGGGTTGTAATTAGGTGACTTCTCTAAGTTGAGAGATTGGATCATACAATTAGTAATTCATATTGGCAAAGGATTCTAAATGAAGTTTTTCATGACATTACTCGTATGAATCTGGGCTTGTTTGGCTTCAAAGGATAAGTTGATCAATTCGGGAGAACTTTTCTGCGTGGAAAAATGCATGAGTAGTTATTGTGATCTGAAAAAATTATTGTGTAAGAATGTAGTCAGAGTTCTATCTAGTGTCTTTTTCACTATTATGTTGTCTAAAATGATTTTTATATACATTGTAGGGAGTCTTGTTGCTTAATGCTGTTCTCACAGGTAATAATCTTCTTTTCACCTTAAGTTCCATACCTTCTTTATCAATGTACTTCCATTTCTAAAATCAGTAAAGTGAAGTTGAGGTAATATGTATAACGCCTTGTTATGTTCTTTGTGATTGTTTTTAAACAAATATTTCATTGATGAGTTTTGCTTTTGACCATCTAAAAAATTTTTCAATAGCTACCAGCTTAAAAGATACTAGCTAACTTTAATGCCATCGGCAACATCTATGACATCAAACCAAAAACTCATCAAACATCACCAAACCGTCACAAAGAGCAACTGCGCTAATATATAGCCATTTCCAGCAGCTAACTGTTCAAGCCGAGATTAGCTACAACTAAAGAAAAATTATAATCTTTCCAAGTTTGCTCATAAACTGCCACCTTATCCTGGGAGAAAAAACAGCAAAAGGCCTCCAAATGGGTGATCTTCGACAACAGGCTTTATAAAGTAACAACCTAACATTGCTGCAATGGAAGCCCTTGGGGAACAAGTTAACAAACACTCCAGCCCCTCAAAACATCCATTATAAAAAGCCAATAACATCAGACTCAAAGACGAGGCCAAAGCGCCCTTTTGAAGATTGATAATCAAACCAAAAAGAACCGAAAACACAAGACGTCGATAGACACTCAGAAGGAATCCACTGCTAGAATCAACACTTTAAAGGATGTAGTTTCTTGTTTGTTCCCATACATTAATAAGAGTTTTACATTATTTTGCTTTTAGTAACTATACATGCTTTCCTGCATTTACTTATTGATAAATACTTTGGGTTTTCCTGTTTAGTTCGAAAGCATCAAGCCAACTCTCATGCTAAAAAAGGATGGGAACAATTCACCGATGCTGTCATCCAAACAATATCACAAAAGAAGGAAGGAGTTGTCTTTCTCCTTTGGGGGAACTCTGCTCAAGCGAAATTGAGGTACTTCTATTGTATGATATTAGTTCTAGCAGGGAGTGCATGACTCTGGAAAGGACCAAAGTAATAATCGAATCATGGTTAAAATATAAACAACGACCTTTTAATTTTTCTTGTTGAAAAAAGAAAATCAGTGACCTTGAGGTTAAAGTTTTTTCTTCTATGTAAATTTCATCTATTGATCAGAATCTGGCATTACAAATTTAATTGGGAACAGGAAATAAAAACCAAGAACTTTCAGTTGAAGACTTGATGTATTTTAATAGATGAAGTGATGTAGGATGAAATATTAGATAATTACTATAATTTAGTTAATATTAGTCTAGTTGACATGGTACTCTATGAACTTGCCTTGGAGTTCGCCGGACACAAGTTTTAACACCTATGCATCAAGTTGGATCAGCGGCGAAGGTTTGAATGGATTTACCTTGGTTAAAGGCCAAGAGTTAAGCGCACTAGTTCCTATCTCAAGGCTAAAACACTCCAGAAGTTTGGTGACCAACCAAGCTTGAATGCCTCAAAACATGCGATCCTAAACACAAGTCTTCAACTTCAATCTGTTGAAACAAGAGGACCACTTGGGTTTATATAGCCAAGGAGTCCAAAAACCAACCTAGATTCTCTAAGTAATATAATTTTATTTAGAATAACCAACCTATTCTAGAAACCTTAAAAGGAATACAAGTTCAAAAATCTTCTAAAAATTCTCCTAAAATATCCTTCTAGAAACATTGTAGGAGTGAGACTAAGTAATGAAGGTTGAACATGTGTTTTTGGCCTGCTTGGTCGATAGCGTGTGTATAGTGAACTCCAAGAGAAGTTCATAAAGCACTATAGCACTAGCTGTTAACTTTTAGATTAACTAGTATTTGATTAATATTTTAGATTTGATTCGTTGCTTGTTAATTTTATTGTAAGGATATAAATATCCACTGTTTAGGATTATAAAAAAACTTTTGAATATTATTTGAAACATGACTTTTTTAAGAAGAAAATAGAACTTTGTTTTTAGAGAGTGTTCTCTCAACTTTTAGGATGAATTTTCCTTGCTTGGCCATAATTTAGCTGTTAGGTACCTATAGAACTTTGTTCTTAAAGAGTGTTCTCTCAACTTTTGAGTGAATTTTCTTTGTTTGGCCATGTTTAGCTGTTAGGTACCCAAACACTGAAAATACACAGAAACTCAAAGATAACACAAGATAGTAATATATTGCAATATTCAAATAAGTCGCAATGTAACAATAGCTTTTAGGGCTATCTCTCTTCCAATGTCCTACAATGGATAATCCCACTCAAATTGATCCCCTTTTAAAACCTCAACTCCCTTTGCTCTTAACCAAGATCCCCTGGATAATTACCACTATACCCCTTACTAATACGCTACTAATATTCTCAATATATACCCTTCCTAGTACTCTCACATCAGCCTAATCTCAAATCCATTACATCAATTGATACGAGAGCCCTTGGAGGTTCTTGGAAAGGTACAAAACTATATACAGTGGTCGAAGATGGCAACATCAACAGTTGACTCCTAGAATTTGTTTCGTCGTCTGGGTATTTACCACCACCATATTTATCTTCATCACTTCCATATTCATCAATCCACTATCATCATACCACATCCAAACATTCCGAACCATCCAAACCAATGTTTCAGCAAACAAAAAACAAGAAACGCCACACTTTCTCAACTAATTTCATAGTCAACTTCGACAACTTTGCAAAGATTAGATGCTCTTGTGTACCATTAAAGAATTCCCTCCAAATCAGCCTAACTAACTACAAGGGCAGAGACAAAGCAAATGATAGTGATGTAGAAGTCGATTACATTATTAAAGAAGTTGAAGAAGACGATGCTGTTATAATAATCAAAGCTAAAGATAAAGACATCGAAAAACACAAGGAAGATGATGAGGAAGTCAGAAAGGACAAGGATTAAAAGAGGAAGTCAAAAAAGAAGAGGAAAATGAAGGTGACTTGATGTCGGACAAGAACATACGATGCTACATGTTGCAACATTGTTAGAGGAAATAACCTTTGTTGTTGGGCTTTGTAAGAGAGATTTGTTTTGATCGCCATGGAATTGTTGAGTGCTACAATTTAGTTAGTGGCTGTTGGTTCATCAGAGGTGACCAATTTGTCAGAGCTTGATGTTGTCAGACAAGGACATAAGATGCTAGATGTTGTGGCATTGTTGGAGGGGGAAGATTTTGCTGCTACAGCTTTTTCAATGGGTTTATTTTGAACATTGCATCTTCATAGGAGGATGCTGGTTTGTCGGAAAGGAACGTTTACGGCGCCACAATGTCATCTGAGGGGCACATTGCAACGCAGAAAAAAAAGGAAAGAAAGAAAGTGGAGACATTGTGGCGCTGATGCAAAGAAATGTGAAAACAGAACGTGCTTCGTATTTTTGTTAATCCTAAACTTACGTGAGACCATATTGACTATAGCATTGAGCCCATTAGTTGGTCACTGGAAGCCTAATTTCCACTTCATTTTCGTGAGATTTTCATGGAGTATTATTTAATTCCAATCTCAATCCAGAAAAAATTTGCACCAAGATTTTTCAATTGGAGTTTACCACACTCAAAAGAGCAGAGGAGAGTTTTCATTTTTGTTACCTCAAACTTGAGGATAGGTCCTTTTTCTACGTTGGGTGATGTTAGTTACTCAATATAACTTGGTTAATATTACTTTAGTTGTTAAGTTAACTTTAGACTAATTAGTTTTAAATTAGTATTTTGCATTTAACTCGTTTGTGTTAATTGTATTGCAAGCCTATAAGTAGCCACCTTTTAGGATTGTGAGGAAACTCTTGAATATTATTTTGAAATAGAACTTTAACTTTAGTGTTCTCTCAACTAAAGGAATGGATTTCTCTTGTTTGGCCTTGGATGGGACCTAATCACAAATTCTGTGCATCATAAGAACAGTAGGGTCAGGAGTAATAAAACTTTGTAATTCCTGCATGCTATTAGGAGTGTTTGTTTTTAGCTGATTTGTGGTTTCGTTGGTTCATTAGCGGGAGTAAGACTCTTGGGTTCATTGGCCAGAGTAAGACTCGTGTGCATCTTTTTCTTTGTTCAGCAGCACATAGGTTCTTGCTTTCCTCCGTGAACTCTAAGACCTTCAGGCATGCGTGTCTCTGTGTGTGTTTTACCTCTCTAATATGACTTTCACCCTCTTGAATTTGGATTATTTCCCACAACCATCGCCCCTATTCCACAGCCTGGAGTGCTGTTCTCATCTGATAATTTTTCTTCTATCTAAGTGCTGCAAGTTTACTCATCATTTCTTCTAAAATGTTCTGCAATGTCAGCATATTCTCCTAGACTCTGAATCCTCAAGTTTGAATTGCTTTAATACCAATTTGATTGGATTGTTATGGTAGAAATTAATGAAAGCTACTACCAAATTAGAAAGGAAAATTAATTTGAGAGGCTAACCACTCAACTTTGACGAACTTATTAAGTTACTATGTATATGCCACTGGTAATATTCCTTATATTGCTCAATTGCATTTCATATTAATAACTCACATATCCCATGCAAATATAAACGCCACACCCACATTTTAGGGGATGTGTGGTAAATACTTTACTTTAGTCGTCATTTGGTACATGTCTTGCTATGCTGGCTCTAAGCTTACAAGTATAGGAACTTTTCCTGTGATGAACAGGAAACTATTTGAGAAAACATGGTTTTGCTGAGCTTTAAAATCAGCATAGTGCAATTTTCATTTACTTTATCTAGCCTAGAACAGCTTAGGTTCTATTGTCTTGATAATTAACTTACAAGAGCATCATCAGAGGGGTTTAATTCCTCTTCTTTCTTGGCAATAGCGTCCTACTTCACATAGAATCTGATGTATGAACAGGTTAATTGATGAGAAAAAACATCACATTCTCAAAGCCGCGCATCCTTCTGGTTTGTCGGCCAACAGAGGCTTCTTTGGTTGCAGGTTAGTTCCATTGTTTAATTCCATTATAAATTTTTTAAACTTTCCAGTTCAAATATTAATTGGAATTTGCTCACACCTTTGTACTTCATCATTTCCCTTCAATATGGTTCTTACAATAACAACATTTGCTATATGCCACTTGGTATTTTGTGTATATACAGAACACTTGGTTCTCTGCCTTTTTTCTCTCTCAAAGACTTGAAAACACTTAAGGAACATAGATGTTTATGGATAAGAGAGAAAATGCTTCAAGTGATTCACTAATATGAGGCAAAGTTGATGGATGCCTTTTCATTTCCCTTGGAATGTTTTCTCATCAAGATTGTTTACTGCCCATTGTTGATTTTCTACAGGCATTTTTCTCGAACAAACATGCTTCTCAAGGAACTGGGTATTGGCGCCATAGATTGGCAACTCTGATCAAAATACTTGCTTGAACCATTGCAGTTAATTTTGTGGCTCCACAGTCTGCTGGATTGACGATTTTTGTGGAATTTTCACTTGTTGATTCATCATTGTTTAAATGATGAGATGCCCATCCTTTCCCATTTTTGTATTATAGTGTTTATACTTGTAGTTAGATTTGATCCCAAAGCAGCAAAACCCTTCTTTATGAATTAGGGTAAAATTAGAAGAAAGTTGGGCTAAATGTGTCTTGGTAGCAAATGTTTGGGTGTTCTTTCAACTCTATTGTTTAAAAGATTTTCTTTTAGCCCCCTTGTGCCTTTAGACTTGTTATCGATGAATGTTCAAATGAATTGTATAATACTTAGTAAGTTAATATAAGTTTAAAGGAGAAATTAGGTCCTTCAATAATTAAAATAGATGATATTTCTACGATTA

mRNA sequence

AGTGACGCATATCCCATAGGCTACGATCAAATTTCAAACAAGCGGGGAGAGTGGAAAGCTTTTAGCGGATTCTCTGTTGGTTCCCGCCATTAAAGCCTGCTCCACCTCCACTCTACCGGAGCAACCAGACCCAAAATGGCTTCCTTCTCGCCTTCACTTAAATCCAAAACCAGAACCCTAATCGACATCTTCCAGCCAGCGCTTTCCAAACGCTTAAAAACCTCACAGACGCTGAAAACCCTTGCAACCACGGACGACAAATGCGATTCAGAGCTCACATTGGCTTCCTCTTCGATGGACATCTCTTCCTCTCAGAAATCCCGCATGGAAACCAACAAATGGTTGGCCAGATCGAAGCGCAATCTCAAAATTTCCTCAGATAGGGTTTCCAAATGGGAGAATGGATGTGTGAAGTTGGAGGAGCTTTTGGTGGACGAGACATGGTTCGAAGCCCTTCCCGGAGAGTTTGAGAAGCCCTATGCTCTTAACCTCTGCAAGTTCGTAGAGACGGAGATTTGCAGCAGCGGTGTCCCTGTTTATCCTCCTCCCTCTTTGATCTTTAATGCTCTGAATTCTACCCCTTTCGATAGGGTGAAAGTTGTTATTCTCGGTCAAGATCCTTATCATGGGCCTGGTCAAGCTATGGGTCTTTCTTTTTCTGTTCCTGAAGGAGTTAAAATCCCATCAAGTCTTCTCAACATATTCAAGGAACTGAGGGAAGATCTTGGTTGTTCCATTCCATCCCACGGAAATCTCGAGAAATGGGCTGTTCAGGGAGTCTTGTTGCTTAATGCTGTTCTCACAGTTCGAAAGCATCAAGCCAACTCTCATGCTAAAAAAGGATGGGAACAATTCACCGATGCTGTCATCCAAACAATATCACAAAAGAAGGAAGGAGTTGTCTTTCTCCTTTGGGGGAACTCTGCTCAAGCGAAATTGAGGTTAATTGATGAGAAAAAACATCACATTCTCAAAGCCGCGCATCCTTCTGGTTTGTCGGCCAACAGAGGCTTCTTTGGTTGCAGGCATTTTTCTCGAACAAACATGCTTCTCAAGGAACTGGGTATTGGCGCCATAGATTGGCAACTCTGATCAAAATACTTGCTTGAACCATTGCAGTTAATTTTGTGGCTCCACAGTCTGCTGGATTGACGATTTTTGTGGAATTTTCACTTGTTGATTCATCATTGTTTAAATGATGAGATGCCCATCCTTTCCCATTTTTGTATTATAGTGTTTATACTTGTAGTTAGATTTGATCCCAAAGCAGCAAAACCCTTCTTTATGAATTAGGGTAAAATTAGAAGAAAGTTGGGCTAAATGTGTCTTGGTAGCAAATGTTTGGGTGTTCTTTCAACTCTATTGTTTAAAAGATTTTCTTTTAGCCCCCTTGTGCCTTTAGACTTGTTATCGATGAATGTTCAAATGAATTGTATAATACTTAGTAAGTTAATATAAGTTTAAAGGAGAAATTAGGTCCTTCAATAATTAAAATAGATGATATTTCTACGATTA

Coding sequence (CDS)

ATGGCTTCCTTCTCGCCTTCACTTAAATCCAAAACCAGAACCCTAATCGACATCTTCCAGCCAGCGCTTTCCAAACGCTTAAAAACCTCACAGACGCTGAAAACCCTTGCAACCACGGACGACAAATGCGATTCAGAGCTCACATTGGCTTCCTCTTCGATGGACATCTCTTCCTCTCAGAAATCCCGCATGGAAACCAACAAATGGTTGGCCAGATCGAAGCGCAATCTCAAAATTTCCTCAGATAGGGTTTCCAAATGGGAGAATGGATGTGTGAAGTTGGAGGAGCTTTTGGTGGACGAGACATGGTTCGAAGCCCTTCCCGGAGAGTTTGAGAAGCCCTATGCTCTTAACCTCTGCAAGTTCGTAGAGACGGAGATTTGCAGCAGCGGTGTCCCTGTTTATCCTCCTCCCTCTTTGATCTTTAATGCTCTGAATTCTACCCCTTTCGATAGGGTGAAAGTTGTTATTCTCGGTCAAGATCCTTATCATGGGCCTGGTCAAGCTATGGGTCTTTCTTTTTCTGTTCCTGAAGGAGTTAAAATCCCATCAAGTCTTCTCAACATATTCAAGGAACTGAGGGAAGATCTTGGTTGTTCCATTCCATCCCACGGAAATCTCGAGAAATGGGCTGTTCAGGGAGTCTTGTTGCTTAATGCTGTTCTCACAGTTCGAAAGCATCAAGCCAACTCTCATGCTAAAAAAGGATGGGAACAATTCACCGATGCTGTCATCCAAACAATATCACAAAAGAAGGAAGGAGTTGTCTTTCTCCTTTGGGGGAACTCTGCTCAAGCGAAATTGAGGTTAATTGATGAGAAAAAACATCACATTCTCAAAGCCGCGCATCCTTCTGGTTTGTCGGCCAACAGAGGCTTCTTTGGTTGCAGGCATTTTTCTCGAACAAACATGCTTCTCAAGGAACTGGGTATTGGCGCCATAGATTGGCAACTCTGA

Protein sequence

MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQKSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLCKFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFSRTNMLLKELGIGAIDWQL

Homology

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BLAST of Cp4.1LG02g08970.1 vs. ExPASy Swiss-Prot
Match: Q9LIH6 (Uracil-DNA glycosylase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UNG PE=1 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-109
Identity = 210/329 (63.83%), Postives = 245/329 (74.47%), Query Frame = 0


Query: 10  SKTRTLIDIFQPALSKRLKT---------------SQTLKTLATTDDKCDSELTLASSSM 69
           S  +TL+D FQPA  KRLK                S+ L ++A +  +     ++A  S 
Sbjct: 4   STPKTLMDFFQPA--KRLKASPSSSSFPAVSVAGGSRDLGSVANSPPRVTVTTSVADDSS 63

Query: 70  DISSSQKSRMETNKWLARSKRNLKISSDRV--SKWENGC-VKLEELLVDETWFEALPGEF 129
            ++  Q +R E NK++A+SKRNL + S+RV  +K E  C V L ELLV+E+W +ALPGEF
Sbjct: 64  GLTPEQIARAEFNKFVAKSKRNLAVCSERVTKAKSEGNCYVPLSELLVEESWLKALPGEF 123

Query: 130 EKPYALNLCKFVETEIC--SSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQA 189
            KPYA +L  F+E EI   S    +YPP  LIFNALN+TPFDRVK VI+GQDPYHGPGQA
Sbjct: 124 HKPYAKSLSDFLEREIITDSKSPLIYPPQHLIFNALNTTPFDRVKTVIIGQDPYHGPGQA 183

Query: 190 MGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQA 249
           MGLSFSVPEG K+PSSLLNIFKEL +D+GCSIP HGNL+KWAVQGVLLLNAVLTVR  Q 
Sbjct: 184 MGLSFSVPEGEKLPSSLLNIFKELHKDVGCSIPRHGNLQKWAVQGVLLLNAVLTVRSKQP 243

Query: 250 NSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSA 309
           NSHAKKGWEQFTDAVIQ+ISQ+KEGVVFLLWG  AQ K +LID  KHHIL AAHPSGLSA
Sbjct: 244 NSHAKKGWEQFTDAVIQSISQQKEGVVFLLWGRYAQEKSKLIDATKHHILTAAHPSGLSA 303

Query: 310 NRGFFGCRHFSRTNMLLKELGIGAIDWQL 319
           NRGFF CRHFSR N LL+E+GI  IDWQL
Sbjct: 304 NRGFFDCRHFSRANQLLEEMGIPPIDWQL 330

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy Swiss-Prot
Match: Q88N05 (Uracil-DNA glycosylase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) OX=160488 GN=ung PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.1e-73
Identity = 132/224 (58.93%), Postives = 162/224 (72.32%), Query Frame = 0


Query: 95  EELLVDETWFEALPGEFEKPYALNLCKFVETEICSSGVPVYPPPSLIFNALNSTPFDRVK 154
           + + ++ +W  AL GEF++PY   L +F+  E  ++G  +YPP  LIFNALNSTP D+VK
Sbjct: 5   DRIKLEPSWKAALRGEFDQPYMHQLREFLRGEY-AAGKEIYPPGPLIFNALNSTPLDQVK 64

Query: 155 VVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQG 214
           VVILGQDPYHGPGQA GL FSV  GV  P SL+NI+KEL+ DL   IPSHG L+ WA QG
Sbjct: 65  VVILGQDPYHGPGQAHGLCFSVQPGVATPPSLVNIYKELQRDLNIPIPSHGYLQSWAEQG 124

Query: 215 VLLLNAVLTVRKHQANSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEK 274
           VLLLN  +TV +  A SHAKKGWE FTD +IQ +S++   VVFLLWG  AQ+K +LID  
Sbjct: 125 VLLLNTTMTVERANAASHAKKGWELFTDRIIQVVSEQCPNVVFLLWGAHAQSKQKLIDGT 184

Query: 275 KHHILKAAHPSGLSANRGFFGCRHFSRTNMLLKELGIGAIDWQL 319
           KH +LK+ HPS LSA RGF GC HFSR N  L++ G+G IDW L
Sbjct: 185 KHLVLKSVHPSPLSAYRGFIGCGHFSRANSFLEQRGLGPIDWAL 227

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy Swiss-Prot
Match: A5W8H2 (Uracil-DNA glycosylase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=ung PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.6e-73
Identity = 132/224 (58.93%), Postives = 162/224 (72.32%), Query Frame = 0


Query: 95  EELLVDETWFEALPGEFEKPYALNLCKFVETEICSSGVPVYPPPSLIFNALNSTPFDRVK 154
           + + ++ +W  AL GEF++PY   L +F+  E  ++G  +YPP  LIFNALNSTP  +VK
Sbjct: 5   DRIKLEPSWKAALRGEFDQPYMHQLREFLRGEY-AAGKEIYPPGPLIFNALNSTPLGQVK 64

Query: 155 VVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQG 214
           VVILGQDPYHGPGQA GL FSV  GV  P SL+NI+KEL+ DL   IPSHG L+ WA QG
Sbjct: 65  VVILGQDPYHGPGQAHGLCFSVQPGVATPPSLVNIYKELQRDLNIPIPSHGYLQSWAEQG 124

Query: 215 VLLLNAVLTVRKHQANSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEK 274
           VLLLN  +TV +  A SHAKKGWE FTD +IQ +S++   VVFLLWG  AQ+K +LID  
Sbjct: 125 VLLLNTTMTVERANAASHAKKGWELFTDRIIQVVSEQCPNVVFLLWGAHAQSKQKLIDGT 184

Query: 275 KHHILKAAHPSGLSANRGFFGCRHFSRTNMLLKELGIGAIDWQL 319
           KH +LK+ HPS LSA RGF GC HFSRTN  L++ G+G IDW L
Sbjct: 185 KHLVLKSVHPSPLSAYRGFIGCGHFSRTNSFLEQRGLGPIDWAL 227

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy Swiss-Prot
Match: C1DQR0 (Uracil-DNA glycosylase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) OX=322710 GN=ung PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.7e-73
Identity = 131/224 (58.48%), Postives = 164/224 (73.21%), Query Frame = 0


Query: 95  EELLVDETWFEALPGEFEKPYALNLCKFVETEICSSGVPVYPPPSLIFNALNSTPFDRVK 154
           + + ++ +W EAL  EFEKPY   L  F+  E  ++G  +YPP SLIFNAL+STP D+VK
Sbjct: 6   DRVRLEASWKEALHDEFEKPYMQELSDFLRRE-KAAGKEIYPPGSLIFNALDSTPLDQVK 65

Query: 155 VVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQG 214
           VVI+GQDPYHGPGQA GL FSV  GV +P SL NIFKEL+ DL   IP HG+L++WA QG
Sbjct: 66  VVIIGQDPYHGPGQAHGLCFSVQPGVPVPPSLQNIFKELKRDLNIDIPKHGHLQRWAEQG 125

Query: 215 VLLLNAVLTVRKHQANSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEK 274
           VLLLN  LTV +  A SHA  GW++FTD VI+ +SQ++E VVF+LWG+ AQ+K RLID  
Sbjct: 126 VLLLNTSLTVERGNAGSHAGMGWQRFTDRVIEVVSQRREHVVFMLWGSHAQSKRRLIDSS 185

Query: 275 KHHILKAAHPSGLSANRGFFGCRHFSRTNMLLKELGIGAIDWQL 319
           KH +L +AHPS LSA+RGF G  HFSR N  L++ G+  IDW L
Sbjct: 186 KHLVLCSAHPSPLSAHRGFIGNGHFSRANQFLEQHGLTPIDWHL 228

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy Swiss-Prot
Match: B0KV50 (Uracil-DNA glycosylase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=ung PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-71
Identity = 131/224 (58.48%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 95  EELLVDETWFEALPGEFEKPYALNLCKFVETEICSSGVPVYPPPSLIFNALNSTPFDRVK 154
           + + ++ +W  AL GEF++PY   L +F+  E  ++G  +YPP  LIFNALNSTP D+VK
Sbjct: 5   DRIKLEPSWKAALRGEFDQPYMHQLREFLRGEY-AAGKEIYPPGPLIFNALNSTPLDQVK 64

Query: 155 VVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQG 214
           VVILGQDPYHGPGQA GL FSV  GV  P SL+NI+KEL+ DL   I SHG L+ WA QG
Sbjct: 65  VVILGQDPYHGPGQAHGLCFSVQPGVATPPSLVNIYKELQRDLNIPIASHGYLQSWAEQG 124

Query: 215 VLLLNAVLTVRKHQANSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEK 274
           VLLLN  +TV +  A SHAKKGWE FTD VIQ +S++   VVFLLWG  AQ+K +LID  
Sbjct: 125 VLLLNTTMTVERANAASHAKKGWEFFTDRVIQVVSEQCPNVVFLLWGAHAQSKQKLIDGT 184

Query: 275 KHHILKAAHPSGLSANRGFFGCRHFSRTNMLLKELGIGAIDWQL 319
           KH +LK+ HPS LSA RGF GC HFSRTN  L++ G+  I+W L
Sbjct: 185 KHLVLKSVHPSPLSAYRGFLGCGHFSRTNSFLEQRGMAPINWAL 227

[Close]

BLAST of Cp4.1LG02g08970.1 vs. NCBI nr
Match: XP_023525611.1 (uracil-DNA glycosylase, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 636 bits (1640), Expect = 5.83e-230
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ
Sbjct: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC
Sbjct: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTNMLLKELGIGAIDWQL
Sbjct: 301 RTNMLLKELGIGAIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. NCBI nr
Match: XP_022981553.1 (uracil-DNA glycosylase, mitochondrial [Cucurbita maxima])

HSP 1 Score: 619 bits (1595), Expect = 4.23e-223
Identity = 308/318 (96.86%), Postives = 314/318 (98.74%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTD+KCDSELTLASSSMDISSSQ
Sbjct: 1   MASSSASLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDEKCDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETNKWLARS RNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEF+KPYALNLC
Sbjct: 61  KSRMETNKWLARSNRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFQKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVP+YPPP LIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPIYPPPCLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNL+KWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLKKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELGIG+IDWQL
Sbjct: 301 RTNVLLKELGIGSIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. NCBI nr
Match: KAG6607671.1 (Uracil-DNA glycosylase, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 613 bits (1582), Expect = 4.05e-221
Identity = 307/318 (96.54%), Postives = 313/318 (98.43%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SLKSKTRTLIDIFQPALSKR+KTSQTLKTLATTD+K DSELTLASSSMDISSSQ
Sbjct: 1   MASSSASLKSKTRTLIDIFQPALSKRIKTSQTLKTLATTDEKGDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEF+KPYALNLC
Sbjct: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFDKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVI+TISQ KEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIKTISQNKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELGI AIDWQL
Sbjct: 301 RTNVLLKELGIDAIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. NCBI nr
Match: XP_022926296.1 (uracil-DNA glycosylase, mitochondrial [Cucurbita moschata])

HSP 1 Score: 612 bits (1578), Expect = 1.65e-220
Identity = 306/318 (96.23%), Postives = 312/318 (98.11%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SLKSKTRTLIDIFQPALSKR+KTSQTLKTLATTD+K DSELTLASSSMDISSSQ
Sbjct: 1   MASSSASLKSKTRTLIDIFQPALSKRIKTSQTLKTLATTDEKGDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEF+KPYALNLC
Sbjct: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFDKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TD VI+TISQ KEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDVVIKTISQNKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELGI AIDWQL
Sbjct: 301 RTNVLLKELGIDAIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. NCBI nr
Match: KAG7028480.1 (Uracil-DNA glycosylase, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 610 bits (1572), Expect = 1.35e-219
Identity = 305/318 (95.91%), Postives = 312/318 (98.11%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MA  S SLKSKTRTLIDIFQPALSKR+KTSQTLKTLATTD+K DSELTLASSSMDISSSQ
Sbjct: 1   MAFSSASLKSKTRTLIDIFQPALSKRIKTSQTLKTLATTDEKGDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETN+WLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEF+KPYALNLC
Sbjct: 61  KSRMETNEWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFDKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVI+TISQ KEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIKTISQNKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELGI AIDWQL
Sbjct: 301 RTNVLLKELGIDAIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy TrEMBL
Match: A0A6J1J2E4 (Uracil-DNA glycosylase OS=Cucurbita maxima OX=3661 GN=LOC111480636 PE=3 SV=1)

HSP 1 Score: 619 bits (1595), Expect = 2.05e-223
Identity = 308/318 (96.86%), Postives = 314/318 (98.74%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTD+KCDSELTLASSSMDISSSQ
Sbjct: 1   MASSSASLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDEKCDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETNKWLARS RNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEF+KPYALNLC
Sbjct: 61  KSRMETNKWLARSNRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFQKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVP+YPPP LIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPIYPPPCLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNL+KWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLKKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELGIG+IDWQL
Sbjct: 301 RTNVLLKELGIGSIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy TrEMBL
Match: A0A6J1EEH8 (Uracil-DNA glycosylase OS=Cucurbita moschata OX=3662 GN=LOC111433476 PE=3 SV=1)

HSP 1 Score: 612 bits (1578), Expect = 7.98e-221
Identity = 306/318 (96.23%), Postives = 312/318 (98.11%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SLKSKTRTLIDIFQPALSKR+KTSQTLKTLATTD+K DSELTLASSSMDISSSQ
Sbjct: 1   MASSSASLKSKTRTLIDIFQPALSKRIKTSQTLKTLATTDEKGDSELTLASSSMDISSSQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
           KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEF+KPYALNLC
Sbjct: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFDKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFVETEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVETEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF
Sbjct: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TD VI+TISQ KEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDVVIKTISQNKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELGI AIDWQL
Sbjct: 301 RTNVLLKELGIDAIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy TrEMBL
Match: A0A0A0KMG3 (Uracil-DNA glycosylase OS=Cucumis sativus OX=3659 GN=Csa_5G289610 PE=3 SV=1)

HSP 1 Score: 593 bits (1528), Expect = 3.34e-213
Identity = 291/318 (91.51%), Postives = 307/318 (96.54%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SL SKTRTLIDIFQPALSKRLKTSQTLKTLAT DDKCDS+LTLASSS DIS+SQ
Sbjct: 1   MASSSASLSSKTRTLIDIFQPALSKRLKTSQTLKTLATNDDKCDSDLTLASSSADISASQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
            SRMETNKW+ARSKRNLK  SDRVSKWENGCVKLEELLV+ETWFEALPGEF+KPYALNLC
Sbjct: 61  ISRMETNKWIARSKRNLKTCSDRVSKWENGCVKLEELLVEETWFEALPGEFQKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFV+TEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVQTEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKELR+DLGCSIPSHGNL KWAVQGVLLLNAVL+VRKHQANSHAK+GWEQF
Sbjct: 181 KIPSSLLNIFKELRDDLGCSIPSHGNLGKWAVQGVLLLNAVLSVRKHQANSHAKRGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVI+TISQKKEG++FLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIKTISQKKEGIIFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKE+G  +IDWQL
Sbjct: 301 RTNILLKEMGTASIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy TrEMBL
Match: A0A1S3CPW3 (Uracil-DNA glycosylase OS=Cucumis melo OX=3656 GN=LOC103502882 PE=3 SV=1)

HSP 1 Score: 592 bits (1526), Expect = 6.73e-213
Identity = 291/318 (91.51%), Postives = 308/318 (96.86%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SL SKTRTLIDIFQPALSKRLKTSQTLKTLAT DDKCDS+LTLASSS D+S+SQ
Sbjct: 1   MASSSASLSSKTRTLIDIFQPALSKRLKTSQTLKTLATNDDKCDSDLTLASSSTDMSASQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
            SRMETNKW+ARSKRNLKI SDRVSKWENGC+KLEELLV+ETWFEALPGEFEKPYALNLC
Sbjct: 61  ISRMETNKWMARSKRNLKICSDRVSKWENGCMKLEELLVEETWFEALPGEFEKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFV+TEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVQTEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQF 240
           KIPSSLLNIFKEL++DLGCSIPSHGNL KWAVQGVLLLNAVL+VR+HQANSHAK+GWEQF
Sbjct: 181 KIPSSLLNIFKELKDDLGCSIPSHGNLGKWAVQGVLLLNAVLSVREHQANSHAKRGWEQF 240

Query: 241 TDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300
           TDAVI+TISQKKEG+VFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS
Sbjct: 241 TDAVIKTISQKKEGIVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSANRGFFGCRHFS 300

Query: 301 RTNMLLKELGIGAIDWQL 318
           RTN+LLKELG  +IDWQL
Sbjct: 301 RTNILLKELGTASIDWQL 318

[Close]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy TrEMBL
Match: A0A1S3CND7 (Uracil-DNA glycosylase OS=Cucumis melo OX=3656 GN=LOC103502882 PE=3 SV=1)

HSP 1 Score: 578 bits (1490), Expect = 5.19e-207
Identity = 291/343 (84.84%), Postives = 308/343 (89.80%), Query Frame = 0


Query: 1   MASFSPSLKSKTRTLIDIFQPALSKRLKTSQTLKTLATTDDKCDSELTLASSSMDISSSQ 60
           MAS S SL SKTRTLIDIFQPALSKRLKTSQTLKTLAT DDKCDS+LTLASSS D+S+SQ
Sbjct: 1   MASSSASLSSKTRTLIDIFQPALSKRLKTSQTLKTLATNDDKCDSDLTLASSSTDMSASQ 60

Query: 61  KSRMETNKWLARSKRNLKISSDRVSKWENGCVKLEELLVDETWFEALPGEFEKPYALNLC 120
            SRMETNKW+ARSKRNLKI SDRVSKWENGC+KLEELLV+ETWFEALPGEFEKPYALNLC
Sbjct: 61  ISRMETNKWMARSKRNLKICSDRVSKWENGCMKLEELLVEETWFEALPGEFEKPYALNLC 120

Query: 121 KFVETEICSSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180
           KFV+TEICSSGVP+YPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV
Sbjct: 121 KFVQTEICSSGVPIYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQAMGLSFSVPEGV 180

Query: 181 KIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLT----------------- 240
           KIPSSLLNIFKEL++DLGCSIPSHGNL KWAVQGVLLLNAVL+                 
Sbjct: 181 KIPSSLLNIFKELKDDLGCSIPSHGNLGKWAVQGVLLLNAVLSATSRILNQKLFKHHQTV 240

Query: 241 --------VRKHQANSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKK 300
                   VR+HQANSHAK+GWEQFTDAVI+TISQKKEG+VFLLWGNSAQAKLRLIDEKK
Sbjct: 241 MKSNKADIVREHQANSHAKRGWEQFTDAVIKTISQKKEGIVFLLWGNSAQAKLRLIDEKK 300

Query: 301 HHILKAAHPSGLSANRGFFGCRHFSRTNMLLKELGIGAIDWQL 318
           HHILKAAHPSGLSANRGFFGCRHFSRTN+LLKELG  +IDWQL
Sbjct: 301 HHILKAAHPSGLSANRGFFGCRHFSRTNILLKELGTASIDWQL 343

[Close]

BLAST of Cp4.1LG02g08970.1 vs. TAIR 10
Match: AT3G18630.1 (uracil dna glycosylase )

HSP 1 Score: 397.5 bits (1020), Expect = 1.0e-110
Identity = 210/329 (63.83%), Postives = 245/329 (74.47%), Query Frame = 0


Query: 10  SKTRTLIDIFQPALSKRLKT---------------SQTLKTLATTDDKCDSELTLASSSM 69
           S  +TL+D FQPA  KRLK                S+ L ++A +  +     ++A  S 
Sbjct: 4   STPKTLMDFFQPA--KRLKASPSSSSFPAVSVAGGSRDLGSVANSPPRVTVTTSVADDSS 63

Query: 70  DISSSQKSRMETNKWLARSKRNLKISSDRV--SKWENGC-VKLEELLVDETWFEALPGEF 129
            ++  Q +R E NK++A+SKRNL + S+RV  +K E  C V L ELLV+E+W +ALPGEF
Sbjct: 64  GLTPEQIARAEFNKFVAKSKRNLAVCSERVTKAKSEGNCYVPLSELLVEESWLKALPGEF 123

Query: 130 EKPYALNLCKFVETEIC--SSGVPVYPPPSLIFNALNSTPFDRVKVVILGQDPYHGPGQA 189
            KPYA +L  F+E EI   S    +YPP  LIFNALN+TPFDRVK VI+GQDPYHGPGQA
Sbjct: 124 HKPYAKSLSDFLEREIITDSKSPLIYPPQHLIFNALNTTPFDRVKTVIIGQDPYHGPGQA 183

Query: 190 MGLSFSVPEGVKIPSSLLNIFKELREDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRKHQA 249
           MGLSFSVPEG K+PSSLLNIFKEL +D+GCSIP HGNL+KWAVQGVLLLNAVLTVR  Q 
Sbjct: 184 MGLSFSVPEGEKLPSSLLNIFKELHKDVGCSIPRHGNLQKWAVQGVLLLNAVLTVRSKQP 243

Query: 250 NSHAKKGWEQFTDAVIQTISQKKEGVVFLLWGNSAQAKLRLIDEKKHHILKAAHPSGLSA 309
           NSHAKKGWEQFTDAVIQ+ISQ+KEGVVFLLWG  AQ K +LID  KHHIL AAHPSGLSA
Sbjct: 244 NSHAKKGWEQFTDAVIQSISQQKEGVVFLLWGRYAQEKSKLIDATKHHILTAAHPSGLSA 303

Query: 310 NRGFFGCRHFSRTNMLLKELGIGAIDWQL 319
           NRGFF CRHFSR N LL+E+GI  IDWQL
Sbjct: 304 NRGFFDCRHFSRANQLLEEMGIPPIDWQL 330

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g08970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIH6	1.4e-109	63.83	Uracil-DNA glycosylase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UNG PE=...	[more]
Q88N05	2.1e-73	58.93	Uracil-DNA glycosylase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCI...	[more]
A5W8H2	3.6e-73	58.93	Uracil-DNA glycosylase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BC...	[more]
C1DQR0	4.7e-73	58.48	Uracil-DNA glycosylase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) OX=...	[more]
B0KV50	1.2e-71	58.48	Uracil-DNA glycosylase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=ung PE=3 ...	[more]

BLAST of Cp4.1LG02g08970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525611.1	5.83e-230	100.00	uracil-DNA glycosylase, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022981553.1	4.23e-223	96.86	uracil-DNA glycosylase, mitochondrial [Cucurbita maxima]	[more]
KAG6607671.1	4.05e-221	96.54	Uracil-DNA glycosylase, mitochondrial, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022926296.1	1.65e-220	96.23	uracil-DNA glycosylase, mitochondrial [Cucurbita moschata]	[more]
KAG7028480.1	1.35e-219	95.91	Uracil-DNA glycosylase, mitochondrial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Cp4.1LG02g08970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2E4	2.05e-223	96.86	Uracil-DNA glycosylase OS=Cucurbita maxima OX=3661 GN=LOC111480636 PE=3 SV=1	[more]
A0A6J1EEH8	7.98e-221	96.23	Uracil-DNA glycosylase OS=Cucurbita moschata OX=3662 GN=LOC111433476 PE=3 SV=1	[more]
A0A0A0KMG3	3.34e-213	91.51	Uracil-DNA glycosylase OS=Cucumis sativus OX=3659 GN=Csa_5G289610 PE=3 SV=1	[more]
A0A1S3CPW3	6.73e-213	91.51	Uracil-DNA glycosylase OS=Cucumis melo OX=3656 GN=LOC103502882 PE=3 SV=1	[more]
A0A1S3CND7	5.19e-207	84.84	Uracil-DNA glycosylase OS=Cucumis melo OX=3656 GN=LOC103502882 PE=3 SV=1	[more]

BLAST of Cp4.1LG02g08970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18630.1	1.0e-110	63.83	uracil dna glycosylase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005122	Uracil-DNA glycosylase-like	SMART	SM00986	UDG_2	coord: 146..306 e-value: 2.9E-39 score: 146.4
IPR005122	Uracil-DNA glycosylase-like	PFAM	PF03167	UDG	coord: 151..307 e-value: 3.5E-24 score: 85.6
None	No IPR available	SMART	SM00987	UDG_2_a	coord: 146..306 e-value: 2.9E-39 score: 146.4
IPR002043	Uracil-DNA glycosylase family 1	TIGRFAM	TIGR00628	TIGR00628	coord: 101..308 e-value: 3.2E-80 score: 266.9
IPR002043	Uracil-DNA glycosylase family 1	PANTHER	PTHR11264	URACIL-DNA GLYCOSYLASE	coord: 34..318
IPR002043	Uracil-DNA glycosylase family 1	HAMAP	MF_00148	UDG	coord: 100..317 score: 38.755238
IPR002043	Uracil-DNA glycosylase family 1	CDD	cd10027	UDG-F1-like	coord: 115..316 e-value: 1.84669E-131 score: 370.241
IPR036895	Uracil-DNA glycosylase-like domain superfamily	GENE3D	3.40.470.10		coord: 79..318 e-value: 2.3E-98 score: 330.6
IPR036895	Uracil-DNA glycosylase-like domain superfamily	SUPERFAMILY	52141	Uracil-DNA glycosylase-like	coord: 98..318
IPR018085	Uracil-DNA glycosylase, active site	PROSITE	PS00130	U_DNA_GLYCOSYLASE	coord: 154..163

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g08970	Cp4.1LG02g08970	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g08970.1:five_prime_utr:001	Cp4.1LG02g08970.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g08970.1:exon:001	Cp4.1LG02g08970.1:exon:001	exon
Cp4.1LG02g08970.1:exon:002	Cp4.1LG02g08970.1:exon:002	exon
Cp4.1LG02g08970.1:exon:003	Cp4.1LG02g08970.1:exon:003	exon
Cp4.1LG02g08970.1:exon:004	Cp4.1LG02g08970.1:exon:004	exon
Cp4.1LG02g08970.1:exon:005	Cp4.1LG02g08970.1:exon:005	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g08970.1:cds:005	Cp4.1LG02g08970.1:cds:005	CDS
Cp4.1LG02g08970.1:cds:004	Cp4.1LG02g08970.1:cds:004	CDS
Cp4.1LG02g08970.1:cds:003	Cp4.1LG02g08970.1:cds:003	CDS
Cp4.1LG02g08970.1:cds:002	Cp4.1LG02g08970.1:cds:002	CDS
Cp4.1LG02g08970.1:cds:001	Cp4.1LG02g08970.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g08970.1:three_prime_utr:001	Cp4.1LG02g08970.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g08970.1	Cp4.1LG02g08970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006281	DNA repair
biological_process	GO:0097510	base-excision repair, AP site formation via deaminated base removal
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds
molecular_function	GO:0004844	uracil DNA N-glycosylase activity