Cp4.1LG02g01710.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g01710.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	translation initiation factor IF-1, chloroplastic-like
Location	Cp4.1LG02: 4447758 .. 4448186 (+)
Sequence length	429
RNA-Seq Expression	Cp4.1LG02g01710.1
Synteny	Cp4.1LG02g01710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTCTACTTTCCTTTTTCCGGCCATCAAATCGCATGTCTCGGTCGTCTCAATCCCGTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGTGAGCTTCGTTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCATGAAGGCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA

mRNA sequence

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTCTACTTTCCTTTTTCCGGCCATCAAATCGCATGTCTCGGTCGTCTCAATCCCGTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGTGAGCTTCGTTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCATGAAGGCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA

Coding sequence (CDS)

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTCTACTTTCCTTTTTCCGGCCATCAAATCGCATGTCTCGGTCGTCTCAATCCCGTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGTGAGCTTCGTTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCATGAAGGCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA

Protein sequence

MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

Homology

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.0e-28
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 47  PSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKN 106
           P+   +S    AK  K  S EQK+ HEG ++ESLPNGMFRV+LDNEDLILGYISGKIRKN
Sbjct: 47  PAAPALSAASAAKPDK--SGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISGKIRKN 106

Query: 107 FVRILPGDRVRVEVSRYDSTKGRIVYRHRST 138
           +VRILPGDRV+VEV+RYDS+KGRIVYR RS+
Sbjct: 107 YVRILPGDRVKVEVTRYDSSKGRIVYRLRSS 135

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy Swiss-Prot
Match: Q94KR9 (Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=infA PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-27
Identity = 55/75 (73.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 65  SSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYD 124
           S EQK++HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYD
Sbjct: 81  SQEQKWTHEGSITESLPNGMFRVKLDNADVVLGYISGKIRKNFIRLLPGDRVKIEVSRYD 140

Query: 125 STKGRIVYRHRSTKD 140
           S+KGRI+YR R  ++
Sbjct: 141 SSKGRIIYRLRGGRE 155

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy Swiss-Prot
Match: A6MMP2 (Translation initiation factor IF-1, chloroplastic OS=Dioscorea elephantipes OX=145284 GN=infA PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.7e-27
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 67  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 126
           EQK  HEG +IESLPNGMFRV+LDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKLIHEGVIIESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYDST 62

Query: 127 KGRIVYRHRS 137
           KGRI+YR R+
Sbjct: 63  KGRIIYRLRN 72

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 54/70 (77.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 67  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 126
           EQK++HEG + ESLPNGMFRV+LDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 127 KGRIVYRHRS 137
           +GRI+YR R+
Sbjct: 63  RGRIIYRLRN 72

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy Swiss-Prot
Match: Q09G11 (Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=4403 GN=infA PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 67  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 126
           EQK+ HEG + ESLPNGMFRV+LDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 127 KGRIVYRHRS 137
           +GRI+YR RS
Sbjct: 63  RGRIIYRLRS 72

[Close]

BLAST of Cp4.1LG02g01710.1 vs. NCBI nr
Match: XP_022940969.1 (translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_023525132.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7037405.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281 bits (720), Expect = 1.48e-95
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYRHRSTKDPSS
Sbjct: 121 SRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. NCBI nr
Match: KAG6607876.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276 bits (705), Expect = 2.87e-93
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQFQCRPPSTFLFPAIKSH+SVVSIPFPSSQFLHNPSHG  SFVPMAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHLSVVSIPFPSSQFLHNPSHGSASFVPMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYRHRSTKDPSS
Sbjct: 121 SRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. NCBI nr
Match: XP_022981301.1 (translation initiation factor IF-1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 268 bits (686), Expect = 2.27e-90
Identity = 135/142 (95.07%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQFQCRPP T LFP  KSH+SVVSIPFPSSQFLHNPSHGP SF PMAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYRHRSTKDPSS
Sbjct: 121 SRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. NCBI nr
Match: XP_011654076.1 (uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical protein Csa_012104 [Cucumis sativus])

HSP 1 Score: 231 bits (588), Expect = 1.98e-75
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +FV MAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFVLMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYR RSTKD SS
Sbjct: 121 SRYDSTKGRIVYRMRSTKDSSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 4.83e-74
Identity = 118/143 (82.52%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQ   RPPST LFP +KSH+SVVSI FP+SQFLH PSH P  F  MAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRST-KDPSS 142
           SRYDSTKGRIVYR RS+ KD SS
Sbjct: 121 SRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 281 bits (720), Expect = 7.17e-96
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYRHRSTKDPSS
Sbjct: 121 SRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy TrEMBL
Match: A0A6J1IW62 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480474 PE=3 SV=1)

HSP 1 Score: 268 bits (686), Expect = 1.10e-90
Identity = 135/142 (95.07%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQFQCRPP T LFP  KSH+SVVSIPFPSSQFLHNPSHGP SF PMAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYRHRSTKDPSS
Sbjct: 121 SRYDSTKGRIVYRHRSTKDPSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy TrEMBL
Match: A0A0A0L4Q7 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 231 bits (588), Expect = 9.61e-76
Identity = 117/142 (82.39%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +FV MAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFVLMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRSTKDPSS 142
           SRYDSTKGRIVYR RSTKD SS
Sbjct: 121 SRYDSTKGRIVYRMRSTKDSSS 142

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 227 bits (579), Expect = 2.34e-74
Identity = 118/143 (82.52%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLLQFPLLQ   RPPST LFP +KSH+SVVSI FP+SQFLH PSH P  F  MAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRST-KDPSS 142
           SRYDSTKGRIVYR RS+ KD SS
Sbjct: 121 SRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 222 bits (565), Expect = 2.69e-72
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60
           MSSTNLL+FPLL    RPPST  FPAIKSH+SVVSI FP+SQFL NPSHGP  F  MAK 
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           PKS+S+EQK+S+EGS++ESLPNGMFRV+LDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 121 SRYDSTKGRIVYRHRST 137
           SRYDSTKGRIVYR+RS+
Sbjct: 121 SRYDSTKGRIVYRNRSS 137

[Close]

BLAST of Cp4.1LG02g01710.1 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-22
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120
           P+ +    K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+
Sbjct: 64  PQVKEGSNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEM 123

Query: 121 SRYDSTKGRIVYRHRS 137
           S YDSTKGRI++R  S
Sbjct: 124 SVYDSTKGRIIFRMSS 139

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01710.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	6.0e-28	71.43	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
Q94KR9	2.3e-27	73.33	Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
A6MMP2	8.7e-27	78.57	Translation initiation factor IF-1, chloroplastic OS=Dioscorea elephantipes OX=1...	[more]
A0A370	1.1e-26	77.14	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]
Q09G11	1.1e-26	78.57	Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=44...	[more]

BLAST of Cp4.1LG02g01710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940969.1	1.48e-95	100.00	translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata] >XP_...	[more]
KAG6607876.1	2.87e-93	97.89	Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022981301.1	2.27e-90	95.07	translation initiation factor IF-1, chloroplastic-like [Cucurbita maxima]	[more]
XP_011654076.1	1.98e-75	82.39	uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical ...	[more]
KAA0064332.1	4.83e-74	82.52	translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl...	[more]

BLAST of Cp4.1LG02g01710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLU6	7.17e-96	100.00	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]
A0A6J1IW62	1.10e-90	95.07	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita maxima OX=36...	[more]
A0A0A0L4Q7	9.61e-76	82.39	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=...	[more]
A0A5A7V7J3	2.34e-74	82.52	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1IP00	2.69e-72	81.02	uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947...	[more]

BLAST of Cp4.1LG02g01710.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	8.6e-22	65.79	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 73..133 e-value: 3.8E-22 score: 77.9
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 61..135 score: 20.351273
IPR004368	Translation initiation factor IF-1	TIGRFAM	TIGR00008	TIGR00008	coord: 67..134 e-value: 3.2E-34 score: 114.7
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 53..139
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 57..135 score: 23.52194
IPR004368	Translation initiation factor IF-1	CDD	cd04451	S1_IF1	coord: 73..133 e-value: 4.72502E-34 score: 111.844
None	No IPR available	GENE3D	2.40.50.140		coord: 61..141 e-value: 1.9E-33 score: 115.9
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 53..139
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 67..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g01710	Cp4.1LG02g01710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g01710.1:exon:001	Cp4.1LG02g01710.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g01710.1:cds:001	Cp4.1LG02g01710.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g01710.1	Cp4.1LG02g01710.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0043022	ribosome binding