Cp4.1LG01g21980.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g21980.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription elongation factor TFIIS-like
Location	Cp4.1LG01: 20466791 .. 20471671 (-)
Sequence length	4152
RNA-Seq Expression	Cp4.1LG01g21980.1
Synteny	Cp4.1LG01g21980.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGCCACGTTTTTCGTCTCTGGCCGTCCGATTTAATTCCTATCTTGCTCCGTCTACCCTTATACCTCATCTCCTAGGCCTCGTTTCAATTTCTCTACTCTCTCCGCCGTCTCTCTGCCGAAAAAGGGATTTTTCCAAAGCCGATCTTGATTTATTTAACGTTGTTGTTTTTGATTTCTTCTATTCAGTGTGGTATTGCGAGCGTTTTTGCAGTCGGCGATTCAGATCTCTGTAAGTGTTACTTATTCGAAATCGATCAATTGCCATCGGCAATGCGTTTTCGTTTGATTTGATGGTATCTTTTTGCTTGTTCATTGAGAAAAGAACTCGAATTCGATATTGATTGCAATACCCCCCCCCCNCGTTGTGTTGTTGTTGGGATCTTATCGTTCTTGGAATGTGGTCGATAGGTTCTATCAAAATTCTTCGTTGGCGGTGATTCGATGGAGAAAGAGCTGGTCGAATTGTTTGAAGCGGCGAAGAAGGCTGCAGACGCCGCTGCAGCACCATCAAATGATGGGGGAGCCGAGGAAAGTCGTTGTCTTGATGCCCTACGGCAGCTCAAGAAATTTCCTGTTACATATCAAATCCTCGTTTCCACTCAGGTTTTCTTCTCACTATACTTGAAATTTCTTTCATTTGTTGATGGTGGATGGATACTCAAAATGTAAACAGCCGGTTAGTTTATAAAATCGTACATGGTTTTTGATATGGACTAAGCCTAAATTCCTTGTTTGCTCGTCAACGAATTGGTTTCATAACGAGCTGCGTTACTCTGTTTCATCTGTTATTTACGTTGTTCATAACGAAATCAACTCACTGCAAGTTTTTGGAACAATAATACTGGAGTCATAGCTCTTGTTATATATTGTTTTCTGGATTTTTTTTCAATCCCTTTTCCTTTGTAATTGAGGTCCATTTTCATGCGTTGCTCAAGATTCTATATCTTGCCTTCCATAGGTTGGGAAGCGCCTTCGGCACCTCACCAAACACCCCAAGAAGAAAATACAAGACTATGCTTCTGACTTGATTGAGATGTGGAAGGATATAGTAATCAAGGAGACTAACAAGAATAAGAAGAATGGAAACGGCAACAGTAAAGAAACATCCAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAACTTGCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTCGATAGGAATGGTTCCACAAGCTCTGTTAAATATTCCAGATCGGCGAGCGCGGTCTCGGAGAAAAACTCTGTTAAGGTTGAAAAAACTGATTCAGTGGTCAAGGTGGAAAGGATGGTTAAAGAAGAGAAGAAAATCTCTATTGAAAAGAAACCAAGCGGCGCTGCTGGACCTCCAAAGCTTACTTCCATGATCAAATCAAAAGATGCTGCTCGGGACAAAATAAGAGAACTTCTCGTTGAGGCCTTCTCCAAGGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGGGCACAGAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGATTTTCGAAGAAAAGTTCTTCTTGGGCTTATCAAGCCAGAAAGGATGACCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAAAACGAAGAGATTGCACAAAAAGCACTATTCGAATGTGAGCGAGGAGGAGCTCCAAAAGCTACCACCGATCAATTCAAATGTGGTCGATGCGGTCAACGCAAGACGACCTACTATCAATTGCAGACACGGAGTGCTGATGAACCTATGACAACGTTTGTAACTTGTGTAAACTGCAATAATCATTGGAAGTTCTGTTGAGTCTCTCTTATGAGCTGCAGAAAATGTTATTGTTTGGAACAATTTACTGAGCTGCTAGTGTTATTTTGCTTTGACACTGGTTGCAATCTGTAATCTCAGTCCACATCACTACATTTAGGACGTAGGAGGTTCTGTACCGTAGGATTTTCAAGTACCAATTTGTCGAGAAATTCAGTGTATAAACTTGTCTATTTCTTATTTCCTTCGGTATTTGTCTGAGTTGCGTACTTCCAAATAACTTGTGTTTCCACTAGTGCTTGTATCATTTCAGTTCTTCAGCGATGTTCATTGGAAGGGCGTAAACTAATGAAAGGTACAATAATGGTTCAGACCAACCAAATCGACTCGGTGTGAAAATCTCTCTAGCATTTTAGAACTTATCCATAAGAATGTAATATACATAATATTGATAGAACAGATTCATGTCTCCTTATTAACGTACATTTGAAACAAGCAAAAGGTAGCCGTCTATAGCTGAGATCGCGGTTGAGCTTGATTGAGCTTGTAATGCTTCACAAAGTTAGCAGAGATCTAAAATCGTCAAAAGAATGAACAAACATCACCTTGTTATTTCCTCTGCATGCTTCTTCTTGATGCATTCAACCCTCTAAAGACTTGGCTTGGTGAAGAATACCCCATGAGTCGATGAAGTGGGGAATTTGATTTGGTCGATAAATTTCCAACTTTGGAGGACAACTTCTCAGCCTTGTAGCCATGGGAGGATGGATCACCAGACTGGTAACTCTTCTTTAGACTTTCAGTTTTGTTTTGAGACCACTTTGAACTAAGCTCTTTCTCCATTTCGTCTCGCCGAGACGAACGTGGTAAGACAACAGAATCGCCTATTTCTCTCGAGCCACTTTTGCTGATAGCAACCCCATAGCCATCGAGCTTATCGGCCTCAGATGGTGGAGGTTCTGCAACACTCGGTACATATGGAACAATATGAGTTCTGCTCTGAAGAGAAAACTCAAGAATCTTAGAGCAATGACCGCACTTGAGCCGATAGCATCGTCTTTTCACCAAGAGAAATTCTGCAGGAATCTGCAGTAACTTCAAGCAGTAGTAACAAGTTATAAACGGGGCACCTCCAGCCACTGGCCGTAGATGATGCTTGGCCACATGATTTTGATGGCTCATATGATCAGACTGCATACGAATGCCCCTTGCAGATAACTGCGCGCTTACAAAACGTTGGGGACTAGATGCACACGAGCTGTATTGACTATAATAGTCGTGATCGATATGCGCCATACGGGCCCCTTGATTATGCCAGTGTTCAGATGGAAGCAGCTGCATTGAGTGTGGGATGTGTTCAATGCCATAGTAATTAACCTGAGGACCACTAACAGCCTTTACAGCAGAAGTCATCCGAGATAAAGAATGTCGTTCGAGATAATTACTTTGAGGCCCTCTTCTTCGTGAGTAAGAAGGATATTCTGTGTCATGCCATGTATCCTTCTGAGTAGCTCCGATCGGTACGTTCCCGTTTCGATTACACGTTTTCTCCAATTCATCCTGCAGTTCGTAAACCATTCTCAACAATCTAACCTTGGCTTCATCATGCTCCACAAAACTGTCTGATGAATGCATTCTAGAATCATGGGGTTCGTCGAACATGGAACTAGAAACGCTGTCGTTCTCGTAGCCACCGTCGCGGTCCCTTCCGAGTAACGACAACTTACTTTGATATTTTCCTCTCCTTAACGTGCTTCTGTTTTGCATATCCTGTCTTCTATGTTGCAGCATATCATTTTGATTCCTTTCATGATATTCTATGCCATAATGGTTCTCACGAGGCAAACTTTTCCAGGAACTCCTTGTTTCAATCGGAATTTCGGAATCTCTAGCCACTGCATTATTGTTCATCAGGGACTCTTCTCTTCTGGGACCGTCGGAAGCTTCTTGAATGTTCTTTAACGAACGTCTTTGACGATCCAAAAACTGATCATCCATTCCATCATATGAAGATACACTTCCATCATATGCAAAAGAACTTCTGGTTTTCAAAGATTTGACCATACCAGTAGCGCAATGATTCACTTCCGTACAAGCAAAATTATCGACAGGAATTCGATGATCGGTATCATGGCTAATCGTTTCTTCGTGTTCTTCTACTCGTGCAGTACGAGGAGCAAGAATCTTAGATGGAATGCTTGTCCCCATAATAGAACTTGTAGCGACTGCATTTGAAATACCTGAGCTTTCTAAATTGGAATGAGTCTCCTTCCAATTGTCTGGACTTTCTTCTCCTGACAGGAAGATCTCATCAACTATGTCATCTCCCGAACGGTCTCCACTTGAGAGCTTGTCTTTCTCAAGATTAGCAACCGCATTCGCAAAAGATACTCGAACCGAAGATCCAGATTGGTCATCATTGGTGGCACTCGTTCGGTGTTTGCTCAAAGATATCTGAACAGGATGCTCCCTGTGGTTGTCTTCGTCTTCCTTTTGATCTTTCTCATCAGTTGGATCCAAAACAGACTCACCGGAGAATGGGATCGTTATTACTTCATGGTTTAACGTGCTCGTTTCTGTTGTTTTTATAGGATCTCGTCCTGAGAGGTCAGCATTCCCAGGAGAAGCATTAGAGCAGCTCGGTTGCTCGTCATGGCAAGCCTGGGATTCATCATTGCTTCCAGCATTATTTAGGCATTCGCTCGACTTAATATGAGCAAGCTGTTCCTGACTAACATCCCCAGATTCTTTCTGATCCTTCACGTCTGTCGGGTCTATAGAACACTCACCGGAGGACGGAATAGTTATTTCAGGACTTGAAATGCTATATTCCTCTTGTTCTGGAGCATCATCTTGGTATGGGAGCTCACCATTCTCATGATAAGCGCACTCTTCTTCACGATACACTTGATTTGGAAATCCTGATGGCCCTTCATGAACAGCACGAGATTCATCGTCGTTTCTAGCATAATTTAGGCGCTCACCCAACTTCCTACGAAC

mRNA sequence

TATGCCACGTTTTTCGTCTCTGGCCGTCCGATTTAATTCCTATCTTGCTCCGTCTACCCTTATACCTCATCTCCTAGGCCTCGTTTCAATTTCTCTACTCTCTCCGCCGTCTCTCTGCCGAAAAAGGGATTTTTCCAAAGCCGATCTTGATTTATTTAACGTTGTTGTTTTTGATTTCTTCTATTCAGTGTGGTATTGCGAGCGTTTTTGCAGTCGGCGATTCAGATCTCTGTTGGGAAGCGCCTTCGGCACCTCACCAAACACCCCAAGAAGAAAATACAAGACTATGCTTCTGACTTGATTGAGATGTGGAAGGATATAGTAATCAAGGAGACTAACAAGAATAAGAAGAATGGAAACGGCAACAGTAAAGAAACATCCAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAACTTGCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTCGATAGGAATGGTTCCACAAGCTCTGTTAAATATTCCAGATCGGCGAGCGCGGTCTCGGAGAAAAACTCTGTTAAGGTTGAAAAAACTGATTCAGTGGTCAAGGTGGAAAGGATGGTTAAAGAAGAGAAGAAAATCTCTATTGAAAAGAAACCAAGCGGCGCTGCTGGACCTCCAAAGCTTACTTCCATGATCAAATCAAAAGATGCTGCTCGGGACAAAATAAGAGAACTTCTCGTTGAGGCCTTCTCCAAGGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGGGCACAGAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGATTTTCGAAGAAAAGTTCTTCTTGGGCTTATCAAGCCAGAAAGGATGACCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAAAACGAAGAGATTGCACAAAAAGCACTATTCGAATGTGAGCGAGGAGGAGCTCCAAAAGCTACCACCGATCAATTCAAATGTGGTCGATGCGGTCAACGCAAGACGACCTACTATCAATTGCAGACACGGAGTGCTGATGAACCTATGACAACGTTTGTAACTTGTGTAAACTGCAATAATCATTGGAAGTTCTGTTGAGTCTCTCTTATGAGCTGCAGAAAATGTTATTGTTTGGAACAATTTACTGAGCTGCTAGTGTTATTTTGCTTTGACACTGGTTGCAATCTGTAATCTCAGTCCACATCACTACATTTAGGACGTAGGAGGTTCTGTACCGTAGGATTTTCAAGTACCAATTTGTCGAGAAATTCAGTGTATAAACTTGTCTATTTCTTATTTCCTTCGGTATTTGTCTGAGTTGCGTACTTCCAAATAACTTGTGTTTCCACTAGTGCTTGTATCATTTCAGTTCTTCAGCGATGTTCATTGGAAGGGCGTAAACTAATGAAAGGTACAATAATGGTTCAGACCAACCAAATCGACTCGGTGTGAAAATCTCTCTAGCATTTTAGAACTTATCCATAAGAATGTAATATACATAATATTGATAGAACAGATTCATGTCTCCTTATTAACGTACATTTGAAACAAGCAAAAGGTAGCCGTCTATAGCTGAGATCGCGGTTGAGCTTGATTGAGCTTGTAATGCTTCACAAAGTTAGCAGAGATCTAAAATCGTCAAAAGAATGAACAAACATCACCTTGTTATTTCCTCTGCATGCTTCTTCTTGATGCATTCAACCCTCTAAAGACTTGGCTTGGTGAAGAATACCCCATGAGTCGATGAAGTGGGGAATTTGATTTGGTCGATAAATTTCCAACTTTGGAGGACAACTTCTCAGCCTTGTAGCCATGGGAGGATGGATCACCAGACTGGTAACTCTTCTTTAGACTTTCAGTTTTGTTTTGAGACCACTTTGAACTAAGCTCTTTCTCCATTTCGTCTCGCCGAGACGAACGTGGTAAGACAACAGAATCGCCTATTTCTCTCGAGCCACTTTTGCTGATAGCAACCCCATAGCCATCGAGCTTATCGGCCTCAGATGGTGGAGGTTCTGCAACACTCGGTACATATGGAACAATATGAGTTCTGCTCTGAAGAGAAAACTCAAGAATCTTAGAGCAATGACCGCACTTGAGCCGATAGCATCGTCTTTTCACCAAGAGAAATTCTGCAGGAATCTGCAGTAACTTCAAGCAGTAGTAACAAGTTATAAACGGGGCACCTCCAGCCACTGGCCGTAGATGATGCTTGGCCACATGATTTTGATGGCTCATATGATCAGACTGCATACGAATGCCCCTTGCAGATAACTGCGCGCTTACAAAACGTTGGGGACTAGATGCACACGAGCTGTATTGACTATAATAGTCGTGATCGATATGCGCCATACGGGCCCCTTGATTATGCCAGTGTTCAGATGGAAGCAGCTGCATTGAGTGTGGGATGTGTTCAATGCCATAGTAATTAACCTGAGGACCACTAACAGCCTTTACAGCAGAAGTCATCCGAGATAAAGAATGTCGTTCGAGATAATTACTTTGAGGCCCTCTTCTTCGTGAGTAAGAAGGATATTCTGTGTCATGCCATGTATCCTTCTGAGTAGCTCCGATCGGTACGTTCCCGTTTCGATTACACGTTTTCTCCAATTCATCCTGCAGTTCGTAAACCATTCTCAACAATCTAACCTTGGCTTCATCATGCTCCACAAAACTGTCTGATGAATGCATTCTAGAATCATGGGGTTCGTCGAACATGGAACTAGAAACGCTGTCGTTCTCGTAGCCACCGTCGCGGTCCCTTCCGAGTAACGACAACTTACTTTGATATTTTCCTCTCCTTAACGTGCTTCTGTTTTGCATATCCTGTCTTCTATGTTGCAGCATATCATTTTGATTCCTTTCATGATATTCTATGCCATAATGGTTCTCACGAGGCAAACTTTTCCAGGAACTCCTTGTTTCAATCGGAATTTCGGAATCTCTAGCCACTGCATTATTGTTCATCAGGGACTCTTCTCTTCTGGGACCGTCGGAAGCTTCTTGAATGTTCTTTAACGAACGTCTTTGACGATCCAAAAACTGATCATCCATTCCATCATATGAAGATACACTTCCATCATATGCAAAAGAACTTCTGGTTTTCAAAGATTTGACCATACCAGTAGCGCAATGATTCACTTCCGTACAAGCAAAATTATCGACAGGAATTCGATGATCGGTATCATGGCTAATCGTTTCTTCGTGTTCTTCTACTCGTGCAGTACGAGGAGCAAGAATCTTAGATGGAATGCTTGTCCCCATAATAGAACTTGTAGCGACTGCATTTGAAATACCTGAGCTTTCTAAATTGGAATGAGTCTCCTTCCAATTGTCTGGACTTTCTTCTCCTGACAGGAAGATCTCATCAACTATGTCATCTCCCGAACGGTCTCCACTTGAGAGCTTGTCTTTCTCAAGATTAGCAACCGCATTCGCAAAAGATACTCGAACCGAAGATCCAGATTGGTCATCATTGGTGGCACTCGTTCGGTGTTTGCTCAAAGATATCTGAACAGGATGCTCCCTGTGGTTGTCTTCGTCTTCCTTTTGATCTTTCTCATCAGTTGGATCCAAAACAGACTCACCGGAGAATGGGATCGTTATTACTTCATGGTTTAACGTGCTCGTTTCTGTTGTTTTTATAGGATCTCGTCCTGAGAGGTCAGCATTCCCAGGAGAAGCATTAGAGCAGCTCGGTTGCTCGTCATGGCAAGCCTGGGATTCATCATTGCTTCCAGCATTATTTAGGCATTCGCTCGACTTAATATGAGCAAGCTGTTCCTGACTAACATCCCCAGATTCTTTCTGATCCTTCACGTCTGTCGGGTCTATAGAACACTCACCGGAGGACGGAATAGTTATTTCAGGACTTGAAATGCTATATTCCTCTTGTTCTGGAGCATCATCTTGGTATGGGAGCTCACCATTCTCATGATAAGCGCACTCTTCTTCACGATACACTTGATTTGGAAATCCTGATGGCCCTTCATGAACAGCACGAGATTCATCGTCGTTTCTAGCATAATTTAGGCGCTCACCCAACTTCCTACGAAC

Coding sequence (CDS)

ATGTGGAAGGATATAGTAATCAAGGAGACTAACAAGAATAAGAAGAATGGAAACGGCAACAGTAAAGAAACATCCAAAATTGGTTCTCCCAGTGCAGAGTCCGTTAAGGTGGAGAACTTGCAAAAATCATCTTCCATGAAGGTTGAGAGAGTTTCCAAGGTTGAGCAATTCGATAGGAATGGTTCCACAAGCTCTGTTAAATATTCCAGATCGGCGAGCGCGGTCTCGGAGAAAAACTCTGTTAAGGTTGAAAAAACTGATTCAGTGGTCAAGGTGGAAAGGATGGTTAAAGAAGAGAAGAAAATCTCTATTGAAAAGAAACCAAGCGGCGCTGCTGGACCTCCAAAGCTTACTTCCATGATCAAATCAAAAGATGCTGCTCGGGACAAAATAAGAGAACTTCTCGTTGAGGCCTTCTCCAAGGTTCCTGGTGAGGCTGATGAAGATGTTATGGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTCGAAAATTGGGGAGGTTCTACTGGGGCACAGAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGATTTTCGAAGAAAAGTTCTTCTTGGGCTTATCAAGCCAGAAAGGATGACCAACTTGAGCACAACTGATATGGCAAGTGATCAGAGAAAACGTGAAAACGAAGAGATTGCACAAAAAGCACTATTCGAATGTGAGCGAGGAGGAGCTCCAAAAGCTACCACCGATCAATTCAAATGTGGTCGATGCGGTCAACGCAAGACGACCTACTATCAATTGCAGACACGGAGTGCTGATGAACCTATGACAACGTTTGTAACTTGTGTAAACTGCAATAATCATTGGAAGTTCTGTTGA

Protein sequence

MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRNGSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of Cp4.1LG01g21980.1 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.7e-78
Identity = 165/301 (54.82%), Postives = 205/301 (68.11%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAES------VKVENLQKSSSMKVERVSKV 60
           +WK +VI+ET K KK    N  + +K+     E       VKV+ LQ+  S K  +V + 
Sbjct: 81  IWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAPVKVQKLQRGDSAKSIKVERK 140

Query: 61  EQFDRNGSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGP 120
           E    N   + VK  R    +   N  K++     VK E++ K+ +  S++     A  P
Sbjct: 141 E--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVSKDNQS-SMKAPAKAANAP 200

Query: 121 PKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENW 180
           PKLT+M+K  D  RDKIRELLVEA  +V GEAD+   + VNASDP+RVAVSVES+MFE  
Sbjct: 201 PKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKL 260

Query: 181 GGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEI 240
           G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++  LS  DMASD+RK+EN +I
Sbjct: 261 GRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQI 320

Query: 241 AQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKF 296
            +KALF+CERG A KA+TDQFKCGRCGQRK TYYQ+QTRSADEPMTT+VTCVNC+NHWKF
Sbjct: 321 KEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKF 378

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy Swiss-Prot
Match: Q15560 (Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 125 DAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAK 184
           DA R+K RE+L  A      + D D +     +D  R++  +E  +F + G +    K +
Sbjct: 136 DAVRNKCREMLTAAL-----QTDHDHV--AIGADCERLSAQIEECIFRDVGNTDMKYKNR 195

Query: 185 YRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALFECER 244
            RS + NLKD KNPD RR VL G I P+++  +++ +MASD+ K   + + ++A+ E + 
Sbjct: 196 VRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQM 255

Query: 245 GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 296
                  TD F CG+C ++  TY Q+QTRS+DEPMTTFV C  C N WKFC
Sbjct: 256 ARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy Swiss-Prot
Match: P49373 (Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfs1 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-26
Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = 0


Query: 160 IRVAVSVESVMFENWGGSTGAQ-KAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLS 219
           I  A  +++ +     G TG++ + + RS+  NLKD  NP  R  VL   I P+R++ ++
Sbjct: 157 IAKAKEIDAQVLARAAGKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMT 216

Query: 220 TTDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 279
           + ++AS+ R++E+ ++ Q+ LF  +     KA TD F CG+C Q+K +YYQ+QTRSADEP
Sbjct: 217 SAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEP 276

Query: 280 MTTFVTCVNCNNHWKF 295
           MTTF  C  C N WKF
Sbjct: 277 MTTFCECTVCGNRWKF 292

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BLAST of Cp4.1LG01g21980.1 vs. ExPASy Swiss-Prot
Match: Q148K0 (Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 125 DAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAK 184
           DA R K RE+L  A      + D D +     +D   +A  +E  +F + G +    K +
Sbjct: 137 DAVRTKCREMLTAAL-----QTDHDHV--AIGADCECLAGQIEECIFRDVGNTDMKYKNR 196

Query: 185 YRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALFECER 244
            RS + NLKD KNP  RRKVL G I P+++  +++ +MASD+ K   + + ++A+ E + 
Sbjct: 197 VRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQM 256

Query: 245 GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 296
                  TD F CG+C ++  TY Q+QTRS+DEPMTTFV C  C N WKFC
Sbjct: 257 ARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy Swiss-Prot
Match: P52652 (Putative transcription elongation factor S-II OS=Caenorhabditis elegans OX=6239 GN=T24H10.1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.6e-25
Identity = 71/215 (33.02%), Postives = 109/215 (50.70%), Query Frame = 0


Query: 92  VERMVKEEKKISIEKKPSGAAGPPKLTSMIKS---------KDAARDKIRELLVEA--FS 151
           VE    E+KKI    K    +  P++ +   S          D  R K  +LL+ A  F 
Sbjct: 104 VEEAKPEKKKIEAPYKRPEPSSRPEIVAQFASASFPPKHLENDETRLKSAQLLLSALRFG 163

Query: 152 KVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDF 211
            +P              DP  +AV +E  ++     +  +  A  RS +FNL+D KN   
Sbjct: 164 DMP----------QGTLDPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLAL 223

Query: 212 RRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALFECERGGAPKATTDQFKCGRC 271
           R  VL G+++ E+   +++ +MAS + +   ++  ++A+ E +        +D FKCG+C
Sbjct: 224 RENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEHQMSVQQGTPSDMFKCGKC 283

Query: 272 GQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 296
           G++  TY QLQTRS+DEPMTTFV C+ C N WKFC
Sbjct: 284 GKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308

[Close]

BLAST of Cp4.1LG01g21980.1 vs. NCBI nr
Match: XP_023531955.1 (transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 560 bits (1443), Expect = 1.91e-199
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN
Sbjct: 80  MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM
Sbjct: 140 GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Cp4.1LG01g21980.1 vs. NCBI nr
Match: XP_022957122.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 555 bits (1429), Expect = 2.59e-197
Identity = 292/295 (98.98%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNGNSKE SKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN
Sbjct: 80  MWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM
Sbjct: 140 GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Cp4.1LG01g21980.1 vs. NCBI nr
Match: KAG7033260.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 551 bits (1420), Expect = 6.07e-196
Identity = 290/295 (98.31%), Postives = 293/295 (99.32%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNG+SKE SKIGSPSAESVKVENLQKSSSMK ERVSKVEQFDRN
Sbjct: 80  MWKDIVIKETNKNKKNGNGDSKEPSKIGSPSAESVKVENLQKSSSMKAERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVER+VKEEKKISIEKKPSGAAGPPKLTSM
Sbjct: 140 GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKKISIEKKPSGAAGPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Cp4.1LG01g21980.1 vs. NCBI nr
Match: XP_022989946.1 (transcription elongation factor TFIIS-like [Cucurbita maxima])

HSP 1 Score: 548 bits (1411), Expect = 1.43e-194
Identity = 289/295 (97.97%), Postives = 292/295 (98.98%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNGNSKE SKIGSPSAESVKVEN QKSSSMKVERVSKVEQF+R 
Sbjct: 80  MWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENFQKSSSMKVERVSKVEQFNRI 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM
Sbjct: 140 GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Cp4.1LG01g21980.1 vs. NCBI nr
Match: KAG6602582.1 (Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 553 bits (1426), Expect = 2.29e-192
Identity = 291/295 (98.64%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNGNSKE SKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN
Sbjct: 379 MWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 438

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVER+VKEEKKISIEKKPSGAAGPPKLT+M
Sbjct: 439 GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERIVKEEKKISIEKKPSGAAGPPKLTAM 498

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 499 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 558

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 559 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 618

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 619 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 673

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy TrEMBL
Match: A0A6J1GYA3 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111458597 PE=4 SV=1)

HSP 1 Score: 555 bits (1429), Expect = 1.25e-197
Identity = 292/295 (98.98%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNGNSKE SKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN
Sbjct: 80  MWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM
Sbjct: 140 GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy TrEMBL
Match: A0A6J1JLK7 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111486982 PE=4 SV=1)

HSP 1 Score: 548 bits (1411), Expect = 6.90e-195
Identity = 289/295 (97.97%), Postives = 292/295 (98.98%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWKDIVIKETNKNKKNGNGNSKE SKIGSPSAESVKVEN QKSSSMKVERVSKVEQF+R 
Sbjct: 80  MWKDIVIKETNKNKKNGNGNSKEPSKIGSPSAESVKVENFQKSSSMKVERVSKVEQFNRI 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           GSTSSVK+SRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM
Sbjct: 140 GSTSSVKFSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELLVEAFSKVPGEADEDV+DEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 504 bits (1299), Expect = 6.50e-178
Identity = 266/295 (90.17%), Postives = 278/295 (94.24%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWK+IVIKETNKNKKNGN +SK++ KIGSPSAESVKVE  QKSSSMKVERVSKVEQFDRN
Sbjct: 80  MWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQKSSSMKVERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           G+TSSVKYS+S S VSE+NSVKVEKTDS+VKVER+VKEEKK S     SGAA PPKLTSM
Sbjct: 140 GATSSVKYSKSESVVSERNSVKVEKTDSMVKVERVVKEEKKPS-----SGAAAPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           IKSKDAARDKIRELL EAFSKVPGEADE+ MDEVNASDPIRVAVSVESVMFENWGGSTGA
Sbjct: 200 IKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N+ST DMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           +CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 DCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 503 bits (1294), Expect = 3.75e-177
Identity = 264/295 (89.49%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWK+IVIKETNKNKKNGN +SK++ KIGSPS ESVKVE  QKSSSMKVERVSKVEQFDRN
Sbjct: 80  MWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQKSSSMKVERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           G+TSSVKYSRS SAVS+ +SVK EKTDSVVKVER+VKEEKK S     SGAA PPKLTSM
Sbjct: 140 GATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKKPS-----SGAAAPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           +KSKDAARDKIRELL EAFSKVPGEADEDVMDEVNASDPIRVA+SVESVMFENWGGSTGA
Sbjct: 200 VKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N++T DMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           +CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 DCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy TrEMBL
Match: A0A1S3C448 (transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE=4 SV=1)

HSP 1 Score: 503 bits (1294), Expect = 3.75e-177
Identity = 264/295 (89.49%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAESVKVENLQKSSSMKVERVSKVEQFDRN 60
           MWK+IVIKETNKNKKNGN +SK++ KIGSPS ESVKVE  QKSSSMKVERVSKVEQFDRN
Sbjct: 80  MWKEIVIKETNKNKKNGNASSKDSPKIGSPSVESVKVEKFQKSSSMKVERVSKVEQFDRN 139

Query: 61  GSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGPPKLTSM 120
           G+TSSVKYSRS SAVS+ +SVK EKTDSVVKVER+VKEEKK S     SGAA PPKLTSM
Sbjct: 140 GATSSVKYSRSESAVSDSSSVKFEKTDSVVKVERIVKEEKKPS-----SGAAAPPKLTSM 199

Query: 121 IKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTGA 180
           +KSKDAARDKIRELL EAFSKVPGEADEDVMDEVNASDPIRVA+SVESVMFENWGGSTGA
Sbjct: 200 VKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISVESVMFENWGGSTGA 259

Query: 181 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKALF 240
           QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERM N++T DMASDQRKRENEEIAQKALF
Sbjct: 260 QKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQRKRENEEIAQKALF 319

Query: 241 ECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 295
           +CERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 DCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Cp4.1LG01g21980.1 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 293.5 bits (750), Expect = 1.9e-79
Identity = 165/301 (54.82%), Postives = 205/301 (68.11%), Query Frame = 0


Query: 1   MWKDIVIKETNKNKKNGNGNSKETSKIGSPSAES------VKVENLQKSSSMKVERVSKV 60
           +WK +VI+ET K KK    N  + +K+     E       VKV+ LQ+  S K  +V + 
Sbjct: 81  IWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAPVKVQKLQRGDSAKSIKVERK 140

Query: 61  EQFDRNGSTSSVKYSRSASAVSEKNSVKVEKTDSVVKVERMVKEEKKISIEKKPSGAAGP 120
           E    N   + VK  R    +   N  K++     VK E++ K+ +  S++     A  P
Sbjct: 141 E--PDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVSKDNQS-SMKAPAKAANAP 200

Query: 121 PKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENW 180
           PKLT+M+K  D  RDKIRELLVEA  +V GEAD+   + VNASDP+RVAVSVES+MFE  
Sbjct: 201 PKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKL 260

Query: 181 GGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEI 240
           G STGAQK KYRSIMFNL+D  NPD RR+VL G I PE++  LS  DMASD+RK+EN +I
Sbjct: 261 GRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQI 320

Query: 241 AQKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKF 296
            +KALF+CERG A KA+TDQFKCGRCGQRK TYYQ+QTRSADEPMTT+VTCVNC+NHWKF
Sbjct: 321 KEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKF 378

[Close]

BLAST of Cp4.1LG01g21980.1 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-21
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 115 PKLTSMIKSKDAARDKIRELLVEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 174
           P  ++M K+ D+ RDK+RE+L  +  KV  E  D ++   V A DP  VAVSVES MFE 
Sbjct: 594 PTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEK 653

Query: 175 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEE 234
            G   G  KAKYRSI+FN+ D  NPD RRKVL+G I  ER+  +   +M S++ ++E + 
Sbjct: 654 LGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQR 713

Query: 235 IAQKALFECE 244
           I + A F+ E
Sbjct: 714 IKENARFKEE 723

[Close]

BLAST of Cp4.1LG01g21980.1 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-21
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 115 PKLTSMIKSKDAARDKIRELLVEAFSKVPGE-ADEDVMDEVNASDPIRVAVSVESVMFEN 174
           P   +M K+ D+ RDK+RE+L  + +KV  E  D ++   V A DP  VAVSVE+ MFEN
Sbjct: 105 PTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFEN 164

Query: 175 WGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMAS 225
            G   G QKAKYRSI+FN+ D  NPD RRKVLLG I  ER+  +   +M S
Sbjct: 165 LGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of Cp4.1LG01g21980.1 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-12
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 115 PKLTSMIKSKDAARDKIRELLVEAFSKVPGEADEDVMDE--VNASDPIRVAVSVESVMFE 174
           P  ++M K+ D+ RDK+ E+L  + +KV  E  +  M    +   DP  VAVSVES M  
Sbjct: 104 PTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-- 163

Query: 175 NWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENE 234
                         SI+FN+ D  NPD RRKVL+G I  ER+  +   +M S++ ++E +
Sbjct: 164 --------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQ 218

Query: 235 EIAQKALFECE 244
            I ++A F+ E
Sbjct: 224 RIKERARFKEE 218

[Close]

BLAST of Cp4.1LG01g21980.1 vs. TAIR 10
Match: AT5G25520.1 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-09
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 158 DPIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNL 217
           DP  +A  +E  +F+ +GG     K K RS++FNLKD  NP+ R  V+ G I PER+ N+
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 218 STTDMASDQ----RKRENEEIAQ 237
           +  ++AS +    R+ + EE+A+
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g21980.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	2.7e-78	54.82	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
Q15560	1.6e-27	39.77	Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=...	[more]
P49373	1.8e-26	41.91	Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ...	[more]
Q148K0	3.1e-26	39.77	Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 ...	[more]
P52652	7.6e-25	33.02	Putative transcription elongation factor S-II OS=Caenorhabditis elegans OX=6239 ...	[more]

BLAST of Cp4.1LG01g21980.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531955.1	1.91e-199	100.00	transcription elongation factor TFIIS-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957122.1	2.59e-197	98.98	transcription elongation factor TFIIS-like [Cucurbita moschata]	[more]
KAG7033260.1	6.07e-196	98.31	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022989946.1	1.43e-194	97.97	transcription elongation factor TFIIS-like [Cucurbita maxima]	[more]
KAG6602582.1	2.29e-192	98.64	Transcription elongation factor TFIIS, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Cp4.1LG01g21980.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYA3	1.25e-197	98.98	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JLK7	6.90e-195	97.97	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0KDH9	6.50e-178	90.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A5A7U9K1	3.75e-177	89.49	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C448	3.75e-177	89.49	transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE...	[more]

BLAST of Cp4.1LG01g21980.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	1.9e-79	54.82	transcript elongation factor IIS	[more]
AT2G42730.1	1.1e-21	45.38	F-box family protein	[more]
AT4G18720.1	5.2e-21	50.45	Transcription factor IIS protein	[more]
AT5G42325.1	4.4e-12	35.88	Transcription factor IIS protein	[more]
AT5G25520.1	2.7e-09	38.55	SPOC domain / Transcription elongation factor S-II protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 255..294 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 255..293 e-value: 7.8E-20 score: 70.4
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 257..292
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 253..293 score: 14.636859
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 125..233 e-value: 4.2E-34 score: 129.3
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 125..241 e-value: 1.8E-30 score: 105.8
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 127..250 score: 32.060188
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 2..295 e-value: 2.4E-76 score: 255.3
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 93..223 e-value: 3.0E-25 score: 90.6
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 116..225
None	No IPR available	GENE3D	2.20.25.10		coord: 224..295 e-value: 7.8E-28 score: 98.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..47
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..295
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..295
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 248..294 e-value: 4.86624E-30 score: 105.766
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 239..293
IPR035100	Transcription elongation factor, IIS-type	PIRSF	PIRSF006704	TFIIS	coord: 1..295 e-value: 7.0E-75 score: 250.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g21980	Cp4.1LG01g21980	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g21980.1:three_prime_utr:001	Cp4.1LG01g21980.1:three_prime_utr:001	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g21980.1:exon:002	Cp4.1LG01g21980.1:exon:002	exon
Cp4.1LG01g21980.1:exon:001	Cp4.1LG01g21980.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g21980.1:cds:001	Cp4.1LG01g21980.1:cds:001	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g21980.1:five_prime_utr:002	Cp4.1LG01g21980.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG01g21980.1:five_prime_utr:001	Cp4.1LG01g21980.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g21980.1	Cp4.1LG01g21980.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003746	translation elongation factor activity