Cp4.1LG00g02750.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACGACGACGCTTCATGGGAGATTAGGGCTTTCGCCGAAGACACTATGGGCACACCTTGGCCACCTAGGTTTTACAATTGCACATTTTGTGGACGAGAATTTAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGTGTACGTTTTCGCCACGAAAATCAACCCATCTCATCCTCGACATCGTCTTTCTCGATCCCCGCCACGAACGTTGTCTACGATGGTGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAACAGCGATTTCCTCCACTCCATCTCTTTACACTCCGCTACACCATATCCATCAAACAATCCGATTGCGTCGTCCATACAATCTTTAAAGTTGTCGGGAGAGGTCGGAGGAACGTCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACAAAGGCCATCTCCAGCTTGA ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACGACGACGCTTCATGGGAGATTAGGGCTTTCGCCGAAGACACTATGGGCACACCTTGGCCACCTAGGTTTTACAATTGCACATTTTGTGGACGAGAATTTAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGTGTACGTTTTCGCCACGAAAATCAACCCATCTCATCCTCGACATCGTCTTTCTCGATCCCCGCCACGAACGTTGTCTACGATGGTGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAACAGCGATTTCCTCCACTCCATCTCTTTACACTCCGCTACACCATATCCATCAAACAATCCGATTGCGTCGTCCATACAATCTTTAAAGTTGTCGGGAGAGGTCGGAGGAACGTCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACAAAGGCCATCTCCAGCTTGA ATGTGGAACCCGAACCAAGCTCACCGAGACGACGACGACGACGCTTCATGGGAGATTAGGGCTTTCGCCGAAGACACTATGGGCACACCTTGGCCACCTAGGTTTTACAATTGCACATTTTGTGGACGAGAATTTAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCATCGTCGCGACCGTGTACGTTTTCGCCACGAAAATCAACCCATCTCATCCTCGACATCGTCTTTCTCGATCCCCGCCACGAACGTTGTCTACGATGGTGGTGGGGTTTGTTTCTTCTACCAATTACCAAATGAAAACAGCGATTTCCTCCACTCCATCTCTTTACACTCCGCTACACCATATCCATCAAACAATCCGATTGCGTCGTCCATACAATCTTTAAAGTTGTCGGGAGAGGTCGGAGGAACGTCGAGCTCCTCGTCTCACTGCAGTCACATGTCTAGCAAAGGAGATGAATCCTTGATATCAATTGATGATGGAGCTGAGAAGCTTGATCTAGAGCTGAGACTTGGACAAAGGCCATCTCCAGCTTGA MWNPNQAHRDDDDDASWEIRAFAEDTMGTPWPPRFYNCTFCGREFKSAQALGGHMNVHRRDRVRFRHENQPISSSTSSFSIPATNVVYDGGGVCFFYQLPNENSDFLHSISLHSATPYPSNNPIASSIQSLKLSGEVGGTSSSSSHCSHMSSKGDESLISIDDGAEKLDLELRLGQRPSPA Homology
BLAST of Cp4.1LG00g02750.1 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16 Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 4.0e-16 Identity = 63/166 (37.95%), Postives = 82/166 (49.40%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2) HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13 Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11 Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06 Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. NCBI nr
Match: KAG7028403.1 (Zinc finger protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 358 bits (918), Expect = 1.80e-124 Identity = 173/181 (95.58%), Postives = 177/181 (97.79%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. NCBI nr
Match: KAG6596923.1 (Zinc finger protein 10, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 357 bits (917), Expect = 2.56e-124 Identity = 172/181 (95.03%), Postives = 177/181 (97.79%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. NCBI nr
Match: XP_038905278.1 (transcriptional regulator SUPERMAN-like [Benincasa hispida]) HSP 1 Score: 249 bits (635), Expect = 3.71e-81 Identity = 134/195 (68.72%), Postives = 151/195 (77.44%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. NCBI nr
Match: XP_004148758.1 (transcriptional regulator SUPERMAN [Cucumis sativus] >ADO15281.1 palmate-like pentafoliata 1 transcription factor, partial [Cucumis sativus]) HSP 1 Score: 240 bits (613), Expect = 8.24e-78 Identity = 131/194 (67.53%), Postives = 153/194 (78.87%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. NCBI nr
Match: KAA0053050.1 (transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa] >TYK11505.1 transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa]) HSP 1 Score: 236 bits (603), Expect = 2.83e-76 Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy TrEMBL
Match: E2IBP9 (Palmate-like pentafoliata 1 transcription factor (Fragment) OS=Cucumis sativus OX=3659 GN=PALM1 PE=4 SV=1) HSP 1 Score: 240 bits (613), Expect = 3.99e-78 Identity = 131/194 (67.53%), Postives = 153/194 (78.87%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy TrEMBL
Match: A0A5A7UCW5 (Transcriptional regulator SUPERMAN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001690 PE=4 SV=1) HSP 1 Score: 236 bits (603), Expect = 1.37e-76 Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy TrEMBL
Match: A0A1S3BKB5 (transcriptional regulator SUPERMAN-like OS=Cucumis melo OX=3656 GN=LOC103490792 PE=4 SV=1) HSP 1 Score: 236 bits (603), Expect = 1.34e-75 Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy TrEMBL
Match: A0A6J1CUC9 (zinc finger protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014851 PE=4 SV=1) HSP 1 Score: 231 bits (589), Expect = 1.73e-74 Identity = 132/197 (67.01%), Postives = 150/197 (76.14%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. ExPASy TrEMBL
Match: A0A2N9EKI1 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3195 PE=4 SV=1) HSP 1 Score: 167 bits (424), Expect = 2.85e-49 Identity = 106/208 (50.96%), Postives = 128/208 (61.54%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. TAIR 10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 118.6 bits (296), Expect = 5.1e-27 Identity = 77/206 (37.38%), Postives = 106/206 (51.46%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. TAIR 10
Match: AT2G37740.1 (zinc-finger protein 10 ) HSP 1 Score: 88.2 bits (217), Expect = 7.4e-18 Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 86.3 bits (212), Expect = 2.8e-17 Identity = 63/166 (37.95%), Postives = 82/166 (49.40%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. TAIR 10
Match: AT5G06070.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14 Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of Cp4.1LG00g02750.1 vs. TAIR 10
Match: AT2G42410.1 (zinc finger protein 11 ) HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12 Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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