CmoCh20G006060.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G006060.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor ILR3-like
LocationCmo_Chr20: 2970707 .. 2977931 (+)
Sequence length3486
RNA-Seq ExpressionCmoCh20G006060.1
SyntenyCmoCh20G006060.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGGGTTCTTCCGATAACTAAAAAGTATATTATTTCGTGCAAAAAAAATTCCTATTCGTATAACTAAGACACTTTCAGTGTCGTGAAATCTAGTCTGCTGCTGATGATGATGAACTCTTGCCATCGTCGTCGTCCGAAGAACTTGAGTCCTCGCCCATCCGGCGTTCTGCAATCGCTGGAAATAGCCGCTGCTGTAGATCTGAATTCTGCTGCGACGATGTTGGAGTTTCTTTTTTGGAATTCTTTGCTTGCTTTGCCGCAGCTGCAGCTTCTTCTTCGACCTGTTGACAGGTCTTGTCTAACACATTCAGGAAATCGCGTACGATCGTGAACAATCGCAATCCTTCGTCCTTTCCAGAATTTCCATGGAAGTAATCCACCGTTCTCTTCACCAGTGCCATTATCCTCTTTTCTTCCTCTGCAATCCACGAAATGTCCGCTTCTGCTCCTTCCACAAATTTCGTCACCGATTGGTGGAATTTGCTGTCTTCGTCCAAACTTTCCATCTCCGCGTTTATAAAACCTTTGGTTCTAAGCAGAGACTGGCCGAGTTTGGAGATCGTCTTCGTTAGCCCTTCCGCATCTATGGCGGCCGCTCTTTTAACGTCCTGGAGCTCCGTGCTCAAACCAGAAACGACCTGAAGACCTAATCGCCGATGATGTTCCACAGAACCGTCGACGACGTCTTCGGAAACCGTATCGTTGGAAACTATACTGGACGAACTCCGGCTATGTCTATTAGAGCGGGCTGCTCGACTGCCCTCCGAACGAATAATCTCCTGTACGACAAAATGTAAGAGCGAAGTTTTGCCGTCGGTTCCCTTAACATCCGCCAGTTTCAAGAGCGTATCGAGCTTGAACGCCTGAGCACCGCCACGGTACGTCCCGACATTCATACGATTGCCAGTTTTGAGAACTGCTTCTAGTAGCTTGAAAAATAGCCTGCTGTTTCTAAGATTTTTGCAGGCGACCTAACATTTATCAACTAGTGGGTAAATTACATGCTGTGTTTCATAAAGTGATTGTGTTTGATTTTGGATTTGAAAATACTTGCCTGCAGCGTAGCAAACGACTCCTTAATGCTAGCGACATCTTCCGTCAATGAGAGCATGAAGAGAAGGCACTCCAATCGTTTAAAAGCAAAAGGAACGTTCACCAACACCTTCAGGAACCGTTCGGCTGGACCTAGCTGAGAAAGATCCCCTGAATATAATCTCAGTTTCAGCTCCTCTTCTGCTGTTGGTGCCATCTTCAACAAGGTCTGCATAAGCTCTGCTGGAAGATCAGGATTTCCTGGTACATAATTTGTTATAAACCCTCTGTTAGTTTCATGAATTAAACCAATTGTAGATTTTATTCTCTTATCAAATCACAAGCACAACACAAACACAAGAACAGAGAGATTGCCTTGTTGAATGGCATCCACAACTTCTTCTGTTGTCACATTCAGTGCCCGTAGGAGAATTGAAAGGTTTTGAGCTTTCCTAGGGTCGATGATTTGAATGTACTGTACTGAAGGTTCCGAAGCTAAATCTTTCTTGCGGTTGCCTTTGTTAGCTTCCACTGCTGCATATCCAAACAAGGACTCCATCATCTCCTCATTGAATCTGTCAATTTTGTAATATACATCAAATCCCTCTGCTGCATAGTAATTACTATTCAGAACTAAGAATTCAAGTAGGCTTACTGGAATGATCCATCACTAATCTCGTGCCAGACCATGGAATGTCCAGGGTTGGCAAGAACCTTATCCCAGAAAAAGGGCTTTAACTTGGTTTTATGGCCTACTGAATCAGGATCCATACTTGAGCCATTGGGTCCACCCTGATGTGGCGCCACAGGTGGTGCTTGACGTTTACCAGGGATTCCCGCCGGTGGTGCAGGTGGGGGCCGAGAAACTTTCGGGGGTGATGGTGGTGGAGCTCTGGGTGCAGGCGGAGGGGGTGGAGGTGCCGCAGCAGGTGCTGTTGGAGGAGGAGGCTGAGCATCTGGTCTTCCAGGAGGGGGTTTTAGAGGCGGCATTGCTGATGATTTACCATCAGATGTTGGACCCTCGGCAATATAGATATGGTTTTCAGGATTCATTGCTAAGTTGCCAACAAAAAAGGGTGGTGGTTTAGTTCCATTATTAGCGTTGATTGCTGGATTTCCATCGCTGTATGCCTTCAGTGAAGAACCTGCTGGTAATTCACTCAAAGATATGTTGTTTAAAGGCTTCTCATTCTTTTGCCCATCCTTCGGCTCAACCTTACTTCCCTTACCTCTACGACAGCAGAACAAAACCAGCGCAACCGCAAGAACAACTCCCACACCAGCTGCTACAATACCAGCAATTATGCCCATCTGGCTTTCTTCATGCTTCTTTAGAGGGCGAGACTTGGGAGAAGCTCGTGGAAGAGATGGTGAGCGAGCCACAGTAGATGGAGGTGAATCCAAAACATCAGTGTCGCCCACTGGCGGTAGCAGTTCTGGCGACGGCGCTGGGGCCATGACAGGAGGAGAATTGGTCGGTGCATTACTCGGCGACAACATTGGAGCATGAATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGATGGAGCTGGAGCTGCAGTAGGGTGCGGTGGTGATGAACCTTGAAACAATCTAATTAATTGTCTCATGTGAATATTGGACTCTACGAAAATGAACTCAATTGATCTCCTAACCCAATCAGATAAGCTAGGAGGACTAAGTTCAGAATCACGAGAAAACATACTTCTCCTTCTTAAACAATCCAACAAGCCATGTTTCATTTCAGGAGGTAGAATTGCTATAGATTTATCCATGGTTTCTTTCTGGATGCAAGGAACAAATTGTTTCGTGCATGCCTTCTTGCCCTGTTATCACGCTAACATTATATCAGAATATTGTTCTATTTTGCAGATGATGAACAGCTGCTGACATGCATTCATTCAAACGATCAAATCATCCTCCATGAACAGAAAAGGAAGCAAAAACAGAAACAAAAAGGTACGAATCACTCATCCCTAATCATGGTTCTAGTTTGAATTGAAAGGAAGAAGTTCAAAATTATATACAAAAGCATGAAATTACCATAGCTCCTTCCAACTCTGAGGATGTGAAATGGCAATCGCCGGCATTGGCGATAACCATTTCTAACGTCTTCCTCCTGCCCTCTGAGCTCACAATTGCCAATGCACAGAGGAGAATCACTAAACCACCCACATAACCGCCTCTTCTCAATTCCATTTCTCTCTGAATCGCTATCCCATCCGTATTCTTCGCTTCTCATTTCATCGAACACTTGAGGGATTTCCCCTCTCGAATCCCTCTCTAAATGAACCACTTCCTTTCGAAAACTTTCCCGACGACCAATTAATTAGAGAATTACCGTCTCAAAATGAAACATCCATCATATTACACTAATCTCATGCGCAAACTCTTCGTCATATTTACAAAATCATGACGTTTTGGAGGTCGAATTCTTGGCCTGCGAATCCTATTTTTGTTCTTCATCAGCAGAATTTCCCCTTGATATTTTCTATTTCCCTCTCTTTTTTCTTCTTCTTTTCTGGATTCCTTTGAAATCAAAACTCAGACCCTTTCTTTTCCTCCCCGATATTTCGAAGGTATCTTTCCTTCATACCCGGAAGATAGTAAAAATCTGATACGTTAAGCAGACGTGCCGAGAACAATGTGGAACACCCACGATTGTTCATATTTCTTTCAAATTTCTTTTGTGCCCTTCTATTTTCAAATCTTATCCCTTTTCACCCCCAAACTCTCTAAATTTACAGAGCGGAACACTTTTTTTTTTTTTTTTGTTAATAGAAATAATTAACATGAGTATTATTTGCTAAATTATTTTGTTAAGCATTTATTTAAACATTTTTTCCATAGGAATAATGGGCCAAATTTTGTTGGGCCGAAGCAACGTCGTTATTCTGGGCCTTCAGAAAAGCCCAGTGAAATTAAGGCTTAAAAAAAAAATGGAAGTGTTTAAATTGGATAATGTGATGAAAGAGACAGGTTGAAAGGTCCCGGGTGGTTGGCTCTTTCATTTTCATTACATCATCGTACGACCATTTCCTCCTTGTTCTAACTGAAATTCGATTCCCAAAGAAATGATCCTTTTTTTCTCTCATTTTCATATTCATATTCTCTTTTGATTAATTATTACTTCTCCTTCACAAGTACTTCAACCACCGGAAGAGCCTACACCTTCTTGATCCCACACATTTTCCCTCCTATTCCTATTTTCCACCCACCAGACACACACACCATCCACTGTGGCAACGCTTCCTTAGTTCATGCAGCTTTCTCAACTTCTTCAAACCACCAATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGGTGCTAATTTGGTTTCTTCAAAATTTGAGAGATTTTGTTACTTGGTTCCATTACGGGTAAATTTGTGGACCCTTTATTCCTATTACCCTGTTTCTGGTTATTATGTTCGTACAAAACCCAGACAGAAAATCTGCTTATATATATGGTTTTCCCCTGTTTTACTTTCTCTTGACTGTTTGCTGAAATGCTTTTAGGGACAGAACAAATCAGTTTGTTTTTGCTGTTGTTGTTGTTGTTGTGCCTTTCCGAATTGTGTGCAGTGTCCTGTTGGGTGTTGGGACGCTGGTAATGGAAACAAAATTTATTAGCTGTAGACTTTGCTTTGGTCTTCACTACTATGCTATAGCATGTGATTAACTGGAGAATCTTTAGCGACCAAGCTGATAATCAATTAATTCTATTTCCCGATGCAGATACAAAGAATTCCAGTTCCCATAACCCCACTTGAATATTATTAAGTGGACTTGTTGGATCTATAAGTCTCTCTTATTCTACTTTTAATTGGATGGTAGATAAATTACTCAGTAGGGTAATATTCTTTCAGTTGACTTCAGGTGAAAATTAGCATCTACAAGAACAATCGTTAGATCTTAACTATTTTGGGTCTCTTTTTTTTTCTTTTCCTTTTGTGGGAAATAATTTATTTTGTCTCTTTATGGATCTTGTTATTGTCTCCAAGTCTGGTTTTGGAGATATGACGTCAATGAGAGAGCTCAGTCAAAGGTAATGATTGGCTCCTGAGCCTATGGGGTGATTCATGCTGTTTCTGGTCAAGCTTAAAAAATTGCCAATTCGGTGGATGCACTATTTTAGAGTTCCTGTTTTCATTAATTACCAGCTAACGACGATTCAAGTCTGTAGAGTAGCCTAAATTCACTCCTTCATTTCATACTTAGCGAAGGTCTTACAGTTTTACTCTCCAGTAAAAGGATAAACCTTCGGACAATTTATTCATTTTATGTATTACTTCTTTTCTTTGACAGTCTTGAGTTTGTTTTTACCTCAAATTTTCATTGCAACTGATTAGATATTCACTTTTTCCAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGGTAAGTTTTTATTGGGTACTGCTAGAGATCTGTCAAATATTTAAGAATATATTTGGATTAGCTAAACGAGGTGAAGTACATTTCTGTTGACTATGTGCAAGAAGGTGCAATGTATCATTATTTCAACGGGCTCCTGACTCTATATCTAGAAAGAAATTGCTAGATTACCCACAAATAGAAATTAAAGCGTTGACTGTTGGGAGTTTAGCTAGAGGATAATGTGCTAGCAGACTTTATTATTGCTATCTCATTCCCAATCCCTTCGAATTCAAGCTGGAAGACATGTCTCTTCATAAAAGCCACCATTAGCAGTTGATATAGTTGCGATATTGCCATAGCCTTATCTGGAACTATGTAGCTGTAGAACATAAAAATTTCTCAACTAACTCTATCATGCAGAAGAAGAAGACGAGAATATTGAGAAAAGTCATATTCTCATCATGGCAAAAAATTATTCAAGCTCACTTCAATAACCGTTAGGATCGGATTCAAAAATATGCATGCTCTGTAGTAGATATAAGTTTAAGGTATTTCTCTCTCAAACATCCAACGGTGAAATTTTGTTAGGCGCTTTGTAGCAGTAGTAGATATAAGTATAGGGCAGTGTGACTTTCTATGATCTTATATATGTTAACATAAATTTGCTAGTGCTTCATTTCATGTATTCTCAAAAACTATGTAGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTATCATATTATCAATTATGGCTCTAGCCTTCAATCTCTTTGTACTAATTCATCATCTATAATGATTTGAAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTGAGATTTGTAACCCATGGGAACTCCCCAAGCTCGTTTCCACCTTGAATGTTGAATAGTTATAATAGCTGCAATGTTGAATAGTTTACTTACATCTGAGACACAGGCAAACTGGAACATACTTATCCCTTGATCTCTAAGCTCAGTATGCATGTAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAAAAGGGAGGACAAATGATTTGGTTCGTTTATTGTGCTGTTATGATTAACAATGCCTTTACATGTTTGTGTTTGATTTGAATTGTTCAAGAAACTCCTGGTGGTGTAAAAACTTTGTTTGAGGACTAAGCAGATGTTGCATTCCTAACTATATATAAATAAACCAAGTTTATCATGTGATATCAGATTATATCAATATTCTTCTTCAGGTT

mRNA sequence

AATTGGGTTCTTCCGATAACTAAAAAGTATATTATTTCGTGCAAAAAAAATTCCTATTCGTATAACTAAGACACTTTCAGTGTCGTGAAATCTAGTCTGCTGCTGATGATGATGAACTCTTGCCATCGTCGTCGTCCGAAGAACTTGAGTCCTCGCCCATCCGGCGTTCTGCAATCGCTGGAAATAGCCGCTGCTGTAGATCTGAATTCTGCTGCGACGATGTTGGAGTTTCTTTTTTGGAATTCTTTGCTTGCTTTGCCGCAGCTGCAGCTTCTTCTTCGACCTGTTGACAGGTCTTGTCTAACACATTCAGGAAATCGCGTACGATCGTGAACAATCGCAATCCTTCGTCCTTTCCAGAATTTCCATGGAAGTAATCCACCGTTCTCTTCACCAGTGCCATTATCCTCTTTTCTTCCTCTGCAATCCACGAAATGTCCGCTTCTGCTCCTTCCACAAATTTCGTCACCGATTGGTGGAATTTGCTGTCTTCGTCCAAACTTTCCATCTCCGCGTTTATAAAACCTTTGGTTCTAAGCAGAGACTGGCCGAGTTTGGAGATCGTCTTCGTTAGCCCTTCCGCATCTATGGCGGCCGCTCTTTTAACGTCCTGGAGCTCCGTGCTCAAACCAGAAACGACCTGAAGACCTAATCGCCGATGATGTTCCACAGAACCGTCGACGACGTCTTCGGAAACCGTATCGTTGGAAACTATACTGGACGAACTCCGGCTATGTCTATTAGAGCGGGCTGCTCGACTGCCCTCCGAACGAATAATCTCCTGTACGACAAAATGTAAGAGCGAAGTTTTGCCGTCGGTTCCCTTAACATCCGCCAGTTTCAAGAGCGTATCGAGCTTGAACGCCTGAGCACCGCCACGCGTAGCAAACGACTCCTTAATGCTAGCGACATCTTCCGTCAATGAGAGCATGAAGAGAAGGCACTCCAATCGTTTAAAAGCAAAAGGAACGTTCACCAACACCTTCAGGAACCGTTCGGCTGGACCTAGCTGAGAAAGATCCCCTGAATATAATCTCAGTTTCAGCTCCTCTTCTGCTGTTGGTGCCATCTTCAACAAGGTCTGCATAAGCTCTGCTGGAAGATCAGGATTTCCTGGATCCATACTTGAGCCATTGGGTCCACCCTGATGTGGCGCCACAGGTGGTGCTTGACGTTTACCAGGGATTCCCGCCGGTGGTGCAGGTGGGGGCCGAGAAACTTTCGGGGGTGATGGTGGTGGAGCTCTGGGTGCAGGCGGAGGGGGTGGAGGTGCCGCAGCAGGTGCTGTTGGAGGAGGAGGCTGAGCATCTGGTCTTCCAGGAGGGGGTTTTAGAGGCGGCATTGCTGATGATTTACCATCAGATGTTGGACCCTCGGCAATATAGATATGGTTTTCAGGATTCATTGCTAAGTTGCCAACAAAAAAGGGTGGTGGTTTAGTTCCATTATTAGCGTTGATTGCTGGATTTCCATCGCTGTATGCCTTCAGTGAAGAACCTGCTGCAGAACAAAACCAGCGCAACCGCAAGAACAACTCCCACACCAGCTGCTACAATACCAGCAATTATGCCCATCTGGCTTTCTTCATGCTTCTTTAGAGGGCGAGACTTGGGAGAAGCTCGTGGAAGAGATGGTGAGCGAGCCACAGTAGATGGAGGTGAATCCAAAACATCAGTGTCGCCCACTGGCGGTAGCAGTTCTGGCGACGGCGCTGGGGCCATGACAGGAGGAGAATTGGTCGGTGCATTACTCGGCGACAACATTGGAGCATGAATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGATGGAGCTGGAGCTGCAGTAGGGTGCGGTGGTGATGAACCTTGAAACAATCTAATTAATTGTCTCATGTGAATATTGGACTCTACGAAAATGAACTCAATTGATCTCCTAACCCAATCAGATAAGCTAGGAGGACTAAGTTCAGAATCACGAGAAAACATACTTCTCCTTCTTAAACAATCCAACAAGCCATGTTTCATTTCAGGAGATGATGAACAGCTGCTGACATGCATTCATTCAAACGATCAAATCATCCTCCATGAACAGAAAAGGAAGCAAAAACAGAAACAAAAAGGAATAATGGGCCAAATTTTGTTGGGCCGAAGCAACGTCGTTATTCTGGGCCTTCAGAAAAGCCCAGTGAAATTAAGGCTTAAAAAAAAAATGGAAGTGTTTAAATTGGATAATGTGATGAAAGAGACAGGTTGAAAGGTCCCGGGTGGTTGGCTCTTTCATTTTCATTACATCATCGTACGACCATTTCCTCCTTGTTCTAACTGAAATTCGATTCCCAAAGAAATGATCCTTTTTTTCTCTCATTTTCATATTCATATTCTCTTTTGATTAATTATTACTTCTCCTTCACAAGTACTTCAACCACCGGAAGAGCCTACACCTTCTTGATCCCACACATTTTCCCTCCTATTCCTATTTTCCACCCACCAGACACACACACCATCCACTGTGGCAACGCTTCCTTAGTTCATGCAGCTTTCTCAACTTCTTCAAACCACCAATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAAAAGGGAGGACAAATGATTTGGTTCGTTTATTGTGCTGTTATGATTAACAATGCCTTTACATGTTTGTGTTTGATTTGAATTGTTCAAGAAACTCCTGGTGGTGTAAAAACTTTGTTTGAGGACTAAGCAGATGTTGCATTCCTAACTATATATAAATAAACCAAGTTTATCATGTGATATCAGATTATATCAATATTCTTCTTCAGGTT

Coding sequence (CDS)

ATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAA

Protein sequence

MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Homology
BLAST of CmoCh20G006060.1 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.1e-57
Identity = 125/211 (59.24%), Postives = 156/211 (73.93%), Query Frame = 0

Query: 31  QSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVG-RKRLKAETSSASTSKACREKLR 90
           Q   FSW        S+  S  VD S  + ++ KE G +KR + E+SSA++SKACREK R
Sbjct: 24  QGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQR 83

Query: 91  RDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKEL 150
           RD+LN++F+EL A+LEPG  PKTDK  IL DA+RMVT L+ E +KLK+S   L++KIKEL
Sbjct: 84  RDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKEL 143

Query: 151 KVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMP 210
           K EKNELRDEKQRL+ EKEKLE Q+KA+NA   +    PP   +A  +AQGQA GNK++P
Sbjct: 144 KTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVP 203

Query: 211 FIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
            I YPG+AMWQF+PPA+VDTSQDHVLRPPVA
Sbjct: 204 IISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234

BLAST of CmoCh20G006060.1 vs. ExPASy Swiss-Prot
Match: Q9C682 (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-52
Identity = 128/240 (53.33%), Postives = 159/240 (66.25%), Query Frame = 0

Query: 4   SAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSL 63
           S  N NWL DY      P++   FS  Q+ +F W        S   S+EVD    D D +
Sbjct: 3   SPENTNWLSDY------PLIEGAFS-DQNPTFPWQIDG----SATVSVEVDGFLCDADVI 62

Query: 64  KE-VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAI 123
           KE   RKR+K E+ + S SKACREK RRD+LN++F ELS+VLEPG+ PKTDKV I++DAI
Sbjct: 63  KEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAI 122

Query: 124 RMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAA 183
           RMV   + E +KLK+    L+EKIKELK EKNELRDEKQ+L+ EKE+++ Q+KA+  +  
Sbjct: 123 RMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQ 182

Query: 184 AD--IQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
                   P TLS     Q QA G+KL+PF  YPG AMWQF+PPA VDTSQDHVLRPPVA
Sbjct: 183 PQPCFLPNPQTLS-----QAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226

BLAST of CmoCh20G006060.1 vs. ExPASy Swiss-Prot
Match: Q8L467 (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-31
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 0

Query: 70  RLKAETSSAST---SKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVT 129
           R +A T S S    +KACRE+LRR+KLNERF++LS+VLEPG+ PKTDK  IL DAIR++ 
Sbjct: 120 RKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILN 179

Query: 130 DLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQ 189
            L+ E  KL+E+   L E+IK LK EKNELR+EK  L+A+KEK E Q+K++ A ++  I 
Sbjct: 180 QLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIP 239

Query: 190 HPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           H P    AAF        NK+  +  Y  + MW ++P +  DTS+D  LRPP A
Sbjct: 240 HIP----AAFN------HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283

BLAST of CmoCh20G006060.1 vs. ExPASy Swiss-Prot
Match: Q9LTC7 (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28
Identity = 87/180 (48.33%), Postives = 115/180 (63.89%), Query Frame = 0

Query: 64  KEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIR 123
           +E   KR +  + S   +KACREKLRR+KLN++F++LS+VLEPG+ PKTDK  IL DAIR
Sbjct: 149 EECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIR 208

Query: 124 MVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKA--VNARA 183
           +V  L+ E  +L+E+   L E+IK LK +KNELR+EK  L+AEKEK+E Q+K+  V +  
Sbjct: 209 VVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPG 268

Query: 184 AADIQHPPPTLSAAFTAQGQAAGNKLMPFIGY-PGIAMWQFLPPATVDTSQDHVLRPPVA 241
               QHP     AAF +   A      P+  Y P + MW  LPPA  DTS+D    PPVA
Sbjct: 269 FMPSQHP-----AAFHSHKMAVA---YPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320

BLAST of CmoCh20G006060.1 vs. ExPASy Swiss-Prot
Match: Q9LT23 (Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.3e-13
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query: 74  ETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIE 133
           + S+  + KA REKLRR+KLNE F+EL  VL+P + PK DK  IL+D ++++ +L  E+ 
Sbjct: 55  DVSARKSQKAGREKLRREKLNEHFVELGNVLDPER-PKNDKATILTDTVQLLKELTSEVN 114

Query: 134 KLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQ 174
           KLK     L ++ +EL  EKN+LR+EK  L+++ E L LQ
Sbjct: 115 KLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ 153

BLAST of CmoCh20G006060.1 vs. ExPASy TrEMBL
Match: A0A6J1FUV8 (transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111449017 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.6e-124
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0

Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE
Sbjct: 42  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 101

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV
Sbjct: 102 VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 161

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI
Sbjct: 162 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 221

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 222 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 276

BLAST of CmoCh20G006060.1 vs. ExPASy TrEMBL
Match: A0A6J1J7A6 (transcription factor ILR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484113 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0

Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPS+KHSLEVDCSYEDLDSLKE
Sbjct: 30  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKE 89

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKA REKLRRDKLNERFLELSAVLEPGKLPKTDKV ILSDAIRM+
Sbjct: 90  VGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMM 149

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLE+QIKAVNARAAADI
Sbjct: 150 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADI 209

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 210 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 264

BLAST of CmoCh20G006060.1 vs. ExPASy TrEMBL
Match: A0A6J1JDT6 (transcription factor ILR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484113 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0

Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPS+KHSLEVDCSYEDLDSLKE
Sbjct: 76  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKE 135

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKA REKLRRDKLNERFLELSAVLEPGKLPKTDKV ILSDAIRM+
Sbjct: 136 VGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMM 195

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLE+QIKAVNARAAADI
Sbjct: 196 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADI 255

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 256 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 310

BLAST of CmoCh20G006060.1 vs. ExPASy TrEMBL
Match: A0A0A0LQH8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423590 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.1e-104
Identity = 203/240 (84.58%), Postives = 219/240 (91.25%), Query Frame = 0

Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MD+   NWNWLFDYST++DL VV   FSPPQS+SFSWSNPSINF S K SLEVDCSYEDL
Sbjct: 1   MDNPPPNWNWLFDYSTVDDLAVVDPRFSPPQSISFSWSNPSINFLS-KDSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DS KEVGRKRL+ ETS+ASTSKACREK RRDKLNERFLEL+AVLEPGK PK+DKV ILSD
Sbjct: 61  DSTKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKSDKVAILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRM+TDLQCE +KL+ES++DLK KIKELKVEKNELRDEKQRLRAEKEKLELQI+AVN R
Sbjct: 121 AIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
            AAD+QHPPPTLSAAFTAQGQ+AGNKLMPFIGYPGIAMWQFLPPA VD SQDHVLRPPVA
Sbjct: 181 -AADVQHPPPTLSAAFTAQGQSAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238

BLAST of CmoCh20G006060.1 vs. ExPASy TrEMBL
Match: A0A5D3BGF0 (Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00470 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.5e-103
Identity = 204/240 (85.00%), Postives = 217/240 (90.42%), Query Frame = 0

Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MD    NWNWLFD STM+DL VV   FSPPQS+SFSWSNPSI+F S K SLEVDCSYEDL
Sbjct: 1   MDYPPPNWNWLFDCSTMDDLAVVDPRFSPPQSISFSWSNPSISFVS-KDSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DS KEVGRKRL+ ETS+ASTSKACREK RRDKLNERFLEL+AVLEPGK PKTDKV ILSD
Sbjct: 61  DSTKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKTDKVAILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRM+TDLQCE +KL+ES++DLK KIKELKVEKNELRDEKQRLRAEKEKLELQI+AVN R
Sbjct: 121 AIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
            AAD+QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPA VD SQDHVLRPPVA
Sbjct: 181 -AADVQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238

BLAST of CmoCh20G006060.1 vs. NCBI nr
Match: KAG6570869.1 (Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 464.9 bits (1195), Expect = 4.1e-127
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL
Sbjct: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD
Sbjct: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR
Sbjct: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
           AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240

BLAST of CmoCh20G006060.1 vs. NCBI nr
Match: KAG7010717.1 (Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463.8 bits (1192), Expect = 9.2e-127
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL
Sbjct: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELS+VLEPGKLPKTDKVVILSD
Sbjct: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSSVLEPGKLPKTDKVVILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR
Sbjct: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
           AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240

BLAST of CmoCh20G006060.1 vs. NCBI nr
Match: XP_023512379.1 (transcription factor ILR3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.1 bits (1185), Expect = 6.0e-126
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0

Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MDDSAGNWNWLFDYSTMEDLPVVGA FSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL
Sbjct: 1   MDDSAGNWNWLFDYSTMEDLPVVGAPFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD
Sbjct: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR
Sbjct: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
           AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240

BLAST of CmoCh20G006060.1 vs. NCBI nr
Match: XP_022944611.1 (transcription factor ILR3-like [Cucurbita moschata])

HSP 1 Score: 455.3 bits (1170), Expect = 3.3e-124
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0

Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE
Sbjct: 42  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 101

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV
Sbjct: 102 VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 161

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI
Sbjct: 162 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 221

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 222 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 276

BLAST of CmoCh20G006060.1 vs. NCBI nr
Match: XP_022986343.1 (transcription factor ILR3-like isoform X1 [Cucurbita maxima] >XP_022986344.1 transcription factor ILR3-like isoform X1 [Cucurbita maxima] >XP_022986345.1 transcription factor ILR3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 3.4e-121
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0

Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPS+KHSLEVDCSYEDLDSLKE
Sbjct: 76  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKE 135

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKA REKLRRDKLNERFLELSAVLEPGKLPKTDKV ILSDAIRM+
Sbjct: 136 VGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMM 195

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLE+QIKAVNARAAADI
Sbjct: 196 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADI 255

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 256 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 310

BLAST of CmoCh20G006060.1 vs. TAIR 10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 4.3e-58
Identity = 125/211 (59.24%), Postives = 156/211 (73.93%), Query Frame = 0

Query: 31  QSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVG-RKRLKAETSSASTSKACREKLR 90
           Q   FSW        S+  S  VD S  + ++ KE G +KR + E+SSA++SKACREK R
Sbjct: 24  QGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQR 83

Query: 91  RDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKEL 150
           RD+LN++F+EL A+LEPG  PKTDK  IL DA+RMVT L+ E +KLK+S   L++KIKEL
Sbjct: 84  RDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKEL 143

Query: 151 KVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMP 210
           K EKNELRDEKQRL+ EKEKLE Q+KA+NA   +    PP   +A  +AQGQA GNK++P
Sbjct: 144 KTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVP 203

Query: 211 FIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
            I YPG+AMWQF+PPA+VDTSQDHVLRPPVA
Sbjct: 204 IISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234

BLAST of CmoCh20G006060.1 vs. TAIR 10
Match: AT1G51070.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-53
Identity = 128/240 (53.33%), Postives = 159/240 (66.25%), Query Frame = 0

Query: 4   SAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSL 63
           S  N NWL DY      P++   FS  Q+ +F W        S   S+EVD    D D +
Sbjct: 3   SPENTNWLSDY------PLIEGAFS-DQNPTFPWQIDG----SATVSVEVDGFLCDADVI 62

Query: 64  KE-VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAI 123
           KE   RKR+K E+ + S SKACREK RRD+LN++F ELS+VLEPG+ PKTDKV I++DAI
Sbjct: 63  KEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAI 122

Query: 124 RMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAA 183
           RMV   + E +KLK+    L+EKIKELK EKNELRDEKQ+L+ EKE+++ Q+KA+  +  
Sbjct: 123 RMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQ 182

Query: 184 AD--IQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
                   P TLS     Q QA G+KL+PF  YPG AMWQF+PPA VDTSQDHVLRPPVA
Sbjct: 183 PQPCFLPNPQTLS-----QAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226

BLAST of CmoCh20G006060.1 vs. TAIR 10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-51
Identity = 117/203 (57.64%), Postives = 145/203 (71.43%), Query Frame = 0

Query: 41  SINFPSNKHSLEVDCSYEDLDSLKE-VGRKRLKAETSSASTSKACREKLRRDKLNERFLE 100
           S + P  K S+EVD    D D +KE   RKR+K E+ + S SKACREK RRD+LN++F E
Sbjct: 95  SRSLPIAKGSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTE 154

Query: 101 LSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDE 160
           LS+VLEPG+ PKTDKV I++DAIRMV   + E +KLK+    L+EKIKELK EKNELRDE
Sbjct: 155 LSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDE 214

Query: 161 KQRLRAEKEKLELQIKAVNARAAAD--IQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIA 220
           KQ+L+ EKE+++ Q+KA+  +          P TLS     Q QA G+KL+PF  YPG A
Sbjct: 215 KQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLS-----QAQAPGSKLVPFTTYPGFA 274

Query: 221 MWQFLPPATVDTSQDHVLRPPVA 241
           MWQF+PPA VDTSQDHVLRPPVA
Sbjct: 275 MWQFMPPAAVDTSQDHVLRPPVA 292

BLAST of CmoCh20G006060.1 vs. TAIR 10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-32
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 0

Query: 70  RLKAETSSAST---SKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVT 129
           R +A T S S    +KACRE+LRR+KLNERF++LS+VLEPG+ PKTDK  IL DAIR++ 
Sbjct: 120 RKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILN 179

Query: 130 DLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQ 189
            L+ E  KL+E+   L E+IK LK EKNELR+EK  L+A+KEK E Q+K++ A ++  I 
Sbjct: 180 QLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIP 239

Query: 190 HPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           H P    AAF        NK+  +  Y  + MW ++P +  DTS+D  LRPP A
Sbjct: 240 HIP----AAFN------HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283

BLAST of CmoCh20G006060.1 vs. TAIR 10
Match: AT4G14410.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-32
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 0

Query: 70  RLKAETSSAST---SKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVT 129
           R +A T S S    +KACRE+LRR+KLNERF++LS+VLEPG+ PKTDK  IL DAIR++ 
Sbjct: 114 RKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILN 173

Query: 130 DLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQ 189
            L+ E  KL+E+   L E+IK LK EKNELR+EK  L+A+KEK E Q+K++ A ++  I 
Sbjct: 174 QLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIP 233

Query: 190 HPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           H P    AAF        NK+  +  Y  + MW ++P +  DTS+D  LRPP A
Sbjct: 234 HIP----AAFN------HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FH376.1e-5759.24Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1[more]
Q9C6822.0e-5253.33Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=... [more]
Q8L4672.0e-3149.43Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=... [more]
Q9LTC71.2e-2848.33Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1[more]
Q9LT239.3e-1346.00Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A6J1FUV81.6e-124100.00transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111449017 PE=... [more]
A0A6J1J7A61.6e-12197.87transcription factor ILR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1JDT61.6e-12197.87transcription factor ILR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A0A0LQH83.1e-10484.58BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423590 PE=4 S... [more]
A0A5D3BGF01.5e-10385.00Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
KAG6570869.14.1e-127100.00Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7010717.19.2e-12799.58Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023512379.16.0e-12699.58transcription factor ILR3-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022944611.13.3e-124100.00transcription factor ILR3-like [Cucurbita moschata][more]
XP_022986343.13.4e-12197.87transcription factor ILR3-like isoform X1 [Cucurbita maxima] >XP_022986344.1 tra... [more]
Match NameE-valueIdentityDescription
AT5G54680.14.3e-5859.24basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G51070.11.4e-5353.33basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G51070.21.0e-5157.64basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT4G14410.11.4e-3249.43basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT4G14410.21.4e-3249.43basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 118..180
NoneNo IPR availableGENE3D1.20.5.1000arf6 gtpase in complex with a specific effector, jip4coord: 127..181
e-value: 5.2E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR46133:SF10BHLH DOMAIN CLASS TRANSCRIPTION FACTORcoord: 4..240
NoneNo IPR availableCDDcd11446bHLH_AtILR3_likecoord: 82..157
e-value: 9.74672E-36
score: 119.745
NoneNo IPR availableCDDcd14686bZIPcoord: 143..175
e-value: 0.00912238
score: 31.7469
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 83..134
e-value: 2.1E-8
score: 43.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 80..129
e-value: 2.9E-8
score: 33.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 77..128
score: 12.398151
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 68..126
e-value: 1.6E-7
score: 33.1
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 81..152
IPR044818Transcription factor ILR3-likePANTHERPTHR46133BHLH TRANSCRIPTION FACTORcoord: 4..240

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh20G006060CmoCh20G006060gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006060.1:exon:1987CmoCh20G006060.1:exon:1987exon
CmoCh20G006060.1:exon:1988CmoCh20G006060.1:exon:1988exon
CmoCh20G006060.1:exon:1989CmoCh20G006060.1:exon:1989exon
CmoCh20G006060.1:exon:1990CmoCh20G006060.1:exon:1990exon
CmoCh20G006060.1:exon:1991CmoCh20G006060.1:exon:1991exon
CmoCh20G006060.1:exon:1992CmoCh20G006060.1:exon:1992exon
CmoCh20G006060.1:exon:1993CmoCh20G006060.1:exon:1993exon
CmoCh20G006060.1:exon:1994CmoCh20G006060.1:exon:1994exon
CmoCh20G006060.1:exon:1995CmoCh20G006060.1:exon:1995exon
CmoCh20G006060.1:exon:1996CmoCh20G006060.1:exon:1996exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006060.1:five_prime_utrCmoCh20G006060.1:five_prime_utrfive_prime_UTR
CmoCh20G006060.1:five_prime_utrCmoCh20G006060.1:five_prime_utr_2five_prime_UTR
CmoCh20G006060.1:five_prime_utrCmoCh20G006060.1:five_prime_utr_3five_prime_UTR
CmoCh20G006060.1:five_prime_utrCmoCh20G006060.1:five_prime_utr_4five_prime_UTR
CmoCh20G006060.1:five_prime_utrCmoCh20G006060.1:five_prime_utr_5five_prime_UTR
CmoCh20G006060.1:five_prime_utrCmoCh20G006060.1:five_prime_utr_6five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006060.1:cdsCmoCh20G006060.1:cdsCDS
CmoCh20G006060.1:cdsCmoCh20G006060.1:cds_2CDS
CmoCh20G006060.1:cdsCmoCh20G006060.1:cds_3CDS
CmoCh20G006060.1:cdsCmoCh20G006060.1:cds_4CDS
CmoCh20G006060.1:cdsCmoCh20G006060.1:cds_5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh20G006060.1:three_prime_utrCmoCh20G006060.1:three_prime_utrthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh20G006060.1CmoCh20G006060.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055072 iron ion homeostasis
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity