CmoCh20G006060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh20G006060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor ILR3-like
Location	Cmo_Chr20: 2970707 .. 2977931 (+)
RNA-Seq Expression	CmoCh20G006060
Synteny	CmoCh20G006060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGGTTCTTCCGATAACTAAAAAGTATATTATTTCGTGCAAAAAAAATTCCTATTCGTATAACTAAGACACTTTCAGTGTCGTGAAATCTAGTCTGCTGCTGATGATGATGAACTCTTGCCATCGTCGTCGTCCGAAGAACTTGAGTCCTCGCCCATCCGGCGTTCTGCAATCGCTGGAAATAGCCGCTGCTGTAGATCTGAATTCTGCTGCGACGATGTTGGAGTTTCTTTTTTGGAATTCTTTGCTTGCTTTGCCGCAGCTGCAGCTTCTTCTTCGACCTGTTGACAGGTCTTGTCTAACACATTCAGGAAATCGCGTACGATCGTGAACAATCGCAATCCTTCGTCCTTTCCAGAATTTCCATGGAAGTAATCCACCGTTCTCTTCACCAGTGCCATTATCCTCTTTTCTTCCTCTGCAATCCACGAAATGTCCGCTTCTGCTCCTTCCACAAATTTCGTCACCGATTGGTGGAATTTGCTGTCTTCGTCCAAACTTTCCATCTCCGCGTTTATAAAACCTTTGGTTCTAAGCAGAGACTGGCCGAGTTTGGAGATCGTCTTCGTTAGCCCTTCCGCATCTATGGCGGCCGCTCTTTTAACGTCCTGGAGCTCCGTGCTCAAACCAGAAACGACCTGAAGACCTAATCGCCGATGATGTTCCACAGAACCGTCGACGACGTCTTCGGAAACCGTATCGTTGGAAACTATACTGGACGAACTCCGGCTATGTCTATTAGAGCGGGCTGCTCGACTGCCCTCCGAACGAATAATCTCCTGTACGACAAAATGTAAGAGCGAAGTTTTGCCGTCGGTTCCCTTAACATCCGCCAGTTTCAAGAGCGTATCGAGCTTGAACGCCTGAGCACCGCCACGGTACGTCCCGACATTCATACGATTGCCAGTTTTGAGAACTGCTTCTAGTAGCTTGAAAAATAGCCTGCTGTTTCTAAGATTTTTGCAGGCGACCTAACATTTATCAACTAGTGGGTAAATTACATGCTGTGTTTCATAAAGTGATTGTGTTTGATTTTGGATTTGAAAATACTTGCCTGCAGCGTAGCAAACGACTCCTTAATGCTAGCGACATCTTCCGTCAATGAGAGCATGAAGAGAAGGCACTCCAATCGTTTAAAAGCAAAAGGAACGTTCACCAACACCTTCAGGAACCGTTCGGCTGGACCTAGCTGAGAAAGATCCCCTGAATATAATCTCAGTTTCAGCTCCTCTTCTGCTGTTGGTGCCATCTTCAACAAGGTCTGCATAAGCTCTGCTGGAAGATCAGGATTTCCTGGTACATAATTTGTTATAAACCCTCTGTTAGTTTCATGAATTAAACCAATTGTAGATTTTATTCTCTTATCAAATCACAAGCACAACACAAACACAAGAACAGAGAGATTGCCTTGTTGAATGGCATCCACAACTTCTTCTGTTGTCACATTCAGTGCCCGTAGGAGAATTGAAAGGTTTTGAGCTTTCCTAGGGTCGATGATTTGAATGTACTGTACTGAAGGTTCCGAAGCTAAATCTTTCTTGCGGTTGCCTTTGTTAGCTTCCACTGCTGCATATCCAAACAAGGACTCCATCATCTCCTCATTGAATCTGTCAATTTTGTAATATACATCAAATCCCTCTGCTGCATAGTAATTACTATTCAGAACTAAGAATTCAAGTAGGCTTACTGGAATGATCCATCACTAATCTCGTGCCAGACCATGGAATGTCCAGGGTTGGCAAGAACCTTATCCCAGAAAAAGGGCTTTAACTTGGTTTTATGGCCTACTGAATCAGGATCCATACTTGAGCCATTGGGTCCACCCTGATGTGGCGCCACAGGTGGTGCTTGACGTTTACCAGGGATTCCCGCCGGTGGTGCAGGTGGGGGCCGAGAAACTTTCGGGGGTGATGGTGGTGGAGCTCTGGGTGCAGGCGGAGGGGGTGGAGGTGCCGCAGCAGGTGCTGTTGGAGGAGGAGGCTGAGCATCTGGTCTTCCAGGAGGGGGTTTTAGAGGCGGCATTGCTGATGATTTACCATCAGATGTTGGACCCTCGGCAATATAGATATGGTTTTCAGGATTCATTGCTAAGTTGCCAACAAAAAAGGGTGGTGGTTTAGTTCCATTATTAGCGTTGATTGCTGGATTTCCATCGCTGTATGCCTTCAGTGAAGAACCTGCTGGTAATTCACTCAAAGATATGTTGTTTAAAGGCTTCTCATTCTTTTGCCCATCCTTCGGCTCAACCTTACTTCCCTTACCTCTACGACAGCAGAACAAAACCAGCGCAACCGCAAGAACAACTCCCACACCAGCTGCTACAATACCAGCAATTATGCCCATCTGGCTTTCTTCATGCTTCTTTAGAGGGCGAGACTTGGGAGAAGCTCGTGGAAGAGATGGTGAGCGAGCCACAGTAGATGGAGGTGAATCCAAAACATCAGTGTCGCCCACTGGCGGTAGCAGTTCTGGCGACGGCGCTGGGGCCATGACAGGAGGAGAATTGGTCGGTGCATTACTCGGCGACAACATTGGAGCATGAATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGATGGAGCTGGAGCTGCAGTAGGGTGCGGTGGTGATGAACCTTGAAACAATCTAATTAATTGTCTCATGTGAATATTGGACTCTACGAAAATGAACTCAATTGATCTCCTAACCCAATCAGATAAGCTAGGAGGACTAAGTTCAGAATCACGAGAAAACATACTTCTCCTTCTTAAACAATCCAACAAGCCATGTTTCATTTCAGGAGGTAGAATTGCTATAGATTTATCCATGGTTTCTTTCTGGATGCAAGGAACAAATTGTTTCGTGCATGCCTTCTTGCCCTGTTATCACGCTAACATTATATCAGAATATTGTTCTATTTTGCAGATGATGAACAGCTGCTGACATGCATTCATTCAAACGATCAAATCATCCTCCATGAACAGAAAAGGAAGCAAAAACAGAAACAAAAAGGTACGAATCACTCATCCCTAATCATGGTTCTAGTTTGAATTGAAAGGAAGAAGTTCAAAATTATATACAAAAGCATGAAATTACCATAGCTCCTTCCAACTCTGAGGATGTGAAATGGCAATCGCCGGCATTGGCGATAACCATTTCTAACGTCTTCCTCCTGCCCTCTGAGCTCACAATTGCCAATGCACAGAGGAGAATCACTAAACCACCCACATAACCGCCTCTTCTCAATTCCATTTCTCTCTGAATCGCTATCCCATCCGTATTCTTCGCTTCTCATTTCATCGAACACTTGAGGGATTTCCCCTCTCGAATCCCTCTCTAAATGAACCACTTCCTTTCGAAAACTTTCCCGACGACCAATTAATTAGAGAATTACCGTCTCAAAATGAAACATCCATCATATTACACTAATCTCATGCGCAAACTCTTCGTCATATTTACAAAATCATGACGTTTTGGAGGTCGAATTCTTGGCCTGCGAATCCTATTTTTGTTCTTCATCAGCAGAATTTCCCCTTGATATTTTCTATTTCCCTCTCTTTTTTCTTCTTCTTTTCTGGATTCCTTTGAAATCAAAACTCAGACCCTTTCTTTTCCTCCCCGATATTTCGAAGGTATCTTTCCTTCATACCCGGAAGATAGTAAAAATCTGATACGTTAAGCAGACGTGCCGAGAACAATGTGGAACACCCACGATTGTTCATATTTCTTTCAAATTTCTTTTGTGCCCTTCTATTTTCAAATCTTATCCCTTTTCACCCCCAAACTCTCTAAATTTACAGAGCGGAACACTTTTTTTTTTTTTTTTGTTAATAGAAATAATTAACATGAGTATTATTTGCTAAATTATTTTGTTAAGCATTTATTTAAACATTTTTTCCATAGGAATAATGGGCCAAATTTTGTTGGGCCGAAGCAACGTCGTTATTCTGGGCCTTCAGAAAAGCCCAGTGAAATTAAGGCTTAAAAAAAAAATGGAAGTGTTTAAATTGGATAATGTGATGAAAGAGACAGGTTGAAAGGTCCCGGGTGGTTGGCTCTTTCATTTTCATTACATCATCGTACGACCATTTCCTCCTTGTTCTAACTGAAATTCGATTCCCAAAGAAATGATCCTTTTTTTCTCTCATTTTCATATTCATATTCTCTTTTGATTAATTATTACTTCTCCTTCACAAGTACTTCAACCACCGGAAGAGCCTACACCTTCTTGATCCCACACATTTTCCCTCCTATTCCTATTTTCCACCCACCAGACACACACACCATCCACTGTGGCAACGCTTCCTTAGTTCATGCAGCTTTCTCAACTTCTTCAAACCACCAATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGGTGCTAATTTGGTTTCTTCAAAATTTGAGAGATTTTGTTACTTGGTTCCATTACGGGTAAATTTGTGGACCCTTTATTCCTATTACCCTGTTTCTGGTTATTATGTTCGTACAAAACCCAGACAGAAAATCTGCTTATATATATGGTTTTCCCCTGTTTTACTTTCTCTTGACTGTTTGCTGAAATGCTTTTAGGGACAGAACAAATCAGTTTGTTTTTGCTGTTGTTGTTGTTGTTGTGCCTTTCCGAATTGTGTGCAGTGTCCTGTTGGGTGTTGGGACGCTGGTAATGGAAACAAAATTTATTAGCTGTAGACTTTGCTTTGGTCTTCACTACTATGCTATAGCATGTGATTAACTGGAGAATCTTTAGCGACCAAGCTGATAATCAATTAATTCTATTTCCCGATGCAGATACAAAGAATTCCAGTTCCCATAACCCCACTTGAATATTATTAAGTGGACTTGTTGGATCTATAAGTCTCTCTTATTCTACTTTTAATTGGATGGTAGATAAATTACTCAGTAGGGTAATATTCTTTCAGTTGACTTCAGGTGAAAATTAGCATCTACAAGAACAATCGTTAGATCTTAACTATTTTGGGTCTCTTTTTTTTTCTTTTCCTTTTGTGGGAAATAATTTATTTTGTCTCTTTATGGATCTTGTTATTGTCTCCAAGTCTGGTTTTGGAGATATGACGTCAATGAGAGAGCTCAGTCAAAGGTAATGATTGGCTCCTGAGCCTATGGGGTGATTCATGCTGTTTCTGGTCAAGCTTAAAAAATTGCCAATTCGGTGGATGCACTATTTTAGAGTTCCTGTTTTCATTAATTACCAGCTAACGACGATTCAAGTCTGTAGAGTAGCCTAAATTCACTCCTTCATTTCATACTTAGCGAAGGTCTTACAGTTTTACTCTCCAGTAAAAGGATAAACCTTCGGACAATTTATTCATTTTATGTATTACTTCTTTTCTTTGACAGTCTTGAGTTTGTTTTTACCTCAAATTTTCATTGCAACTGATTAGATATTCACTTTTTCCAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGGTAAGTTTTTATTGGGTACTGCTAGAGATCTGTCAAATATTTAAGAATATATTTGGATTAGCTAAACGAGGTGAAGTACATTTCTGTTGACTATGTGCAAGAAGGTGCAATGTATCATTATTTCAACGGGCTCCTGACTCTATATCTAGAAAGAAATTGCTAGATTACCCACAAATAGAAATTAAAGCGTTGACTGTTGGGAGTTTAGCTAGAGGATAATGTGCTAGCAGACTTTATTATTGCTATCTCATTCCCAATCCCTTCGAATTCAAGCTGGAAGACATGTCTCTTCATAAAAGCCACCATTAGCAGTTGATATAGTTGCGATATTGCCATAGCCTTATCTGGAACTATGTAGCTGTAGAACATAAAAATTTCTCAACTAACTCTATCATGCAGAAGAAGAAGACGAGAATATTGAGAAAAGTCATATTCTCATCATGGCAAAAAATTATTCAAGCTCACTTCAATAACCGTTAGGATCGGATTCAAAAATATGCATGCTCTGTAGTAGATATAAGTTTAAGGTATTTCTCTCTCAAACATCCAACGGTGAAATTTTGTTAGGCGCTTTGTAGCAGTAGTAGATATAAGTATAGGGCAGTGTGACTTTCTATGATCTTATATATGTTAACATAAATTTGCTAGTGCTTCATTTCATGTATTCTCAAAAACTATGTAGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTATCATATTATCAATTATGGCTCTAGCCTTCAATCTCTTTGTACTAATTCATCATCTATAATGATTTGAAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTGAGATTTGTAACCCATGGGAACTCCCCAAGCTCGTTTCCACCTTGAATGTTGAATAGTTATAATAGCTGCAATGTTGAATAGTTTACTTACATCTGAGACACAGGCAAACTGGAACATACTTATCCCTTGATCTCTAAGCTCAGTATGCATGTAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAAAAGGGAGGACAAATGATTTGGTTCGTTTATTGTGCTGTTATGATTAACAATGCCTTTACATGTTTGTGTTTGATTTGAATTGTTCAAGAAACTCCTGGTGGTGTAAAAACTTTGTTTGAGGACTAAGCAGATGTTGCATTCCTAACTATATATAAATAAACCAAGTTTATCATGTGATATCAGATTATATCAATATTCTTCTTCAGGTT

mRNA sequence

AATTGGGTTCTTCCGATAACTAAAAAGTATATTATTTCGTGCAAAAAAAATTCCTATTCGTATAACTAAGACACTTTCAGTGTCGTGAAATCTAGTCTGCTGCTGATGATGATGAACTCTTGCCATCGTCGTCGTCCGAAGAACTTGAGTCCTCGCCCATCCGGCGTTCTGCAATCGCTGGAAATAGCCGCTGCTGTAGATCTGAATTCTGCTGCGACGATGTTGGAGTTTCTTTTTTGGAATTCTTTGCTTGCTTTGCCGCAGCTGCAGCTTCTTCTTCGACCTGTTGACAGGTCTTGTCTAACACATTCAGGAAATCGCGTACGATCGTGAACAATCGCAATCCTTCGTCCTTTCCAGAATTTCCATGGAAGTAATCCACCGTTCTCTTCACCAGTGCCATTATCCTCTTTTCTTCCTCTGCAATCCACGAAATGTCCGCTTCTGCTCCTTCCACAAATTTCGTCACCGATTGGTGGAATTTGCTGTCTTCGTCCAAACTTTCCATCTCCGCGTTTATAAAACCTTTGGTTCTAAGCAGAGACTGGCCGAGTTTGGAGATCGTCTTCGTTAGCCCTTCCGCATCTATGGCGGCCGCTCTTTTAACGTCCTGGAGCTCCGTGCTCAAACCAGAAACGACCTGAAGACCTAATCGCCGATGATGTTCCACAGAACCGTCGACGACGTCTTCGGAAACCGTATCGTTGGAAACTATACTGGACGAACTCCGGCTATGTCTATTAGAGCGGGCTGCTCGACTGCCCTCCGAACGAATAATCTCCTGTACGACAAAATGTAAGAGCGAAGTTTTGCCGTCGGTTCCCTTAACATCCGCCAGTTTCAAGAGCGTATCGAGCTTGAACGCCTGAGCACCGCCACGCGTAGCAAACGACTCCTTAATGCTAGCGACATCTTCCGTCAATGAGAGCATGAAGAGAAGGCACTCCAATCGTTTAAAAGCAAAAGGAACGTTCACCAACACCTTCAGGAACCGTTCGGCTGGACCTAGCTGAGAAAGATCCCCTGAATATAATCTCAGTTTCAGCTCCTCTTCTGCTGTTGGTGCCATCTTCAACAAGGTCTGCATAAGCTCTGCTGGAAGATCAGGATTTCCTGGATCCATACTTGAGCCATTGGGTCCACCCTGATGTGGCGCCACAGGTGGTGCTTGACGTTTACCAGGGATTCCCGCCGGTGGTGCAGGTGGGGGCCGAGAAACTTTCGGGGGTGATGGTGGTGGAGCTCTGGGTGCAGGCGGAGGGGGTGGAGGTGCCGCAGCAGGTGCTGTTGGAGGAGGAGGCTGAGCATCTGGTCTTCCAGGAGGGGGTTTTAGAGGCGGCATTGCTGATGATTTACCATCAGATGTTGGACCCTCGGCAATATAGATATGGTTTTCAGGATTCATTGCTAAGTTGCCAACAAAAAAGGGTGGTGGTTTAGTTCCATTATTAGCGTTGATTGCTGGATTTCCATCGCTGTATGCCTTCAGTGAAGAACCTGCTGCAGAACAAAACCAGCGCAACCGCAAGAACAACTCCCACACCAGCTGCTACAATACCAGCAATTATGCCCATCTGGCTTTCTTCATGCTTCTTTAGAGGGCGAGACTTGGGAGAAGCTCGTGGAAGAGATGGTGAGCGAGCCACAGTAGATGGAGGTGAATCCAAAACATCAGTGTCGCCCACTGGCGGTAGCAGTTCTGGCGACGGCGCTGGGGCCATGACAGGAGGAGAATTGGTCGGTGCATTACTCGGCGACAACATTGGAGCATGAATGGGAGACAGTAATGGAGAATTAGCCGGTGATTCTGCATCAGGAGATGGAGCTGGAGCTGCAGTAGGGTGCGGTGGTGATGAACCTTGAAACAATCTAATTAATTGTCTCATGTGAATATTGGACTCTACGAAAATGAACTCAATTGATCTCCTAACCCAATCAGATAAGCTAGGAGGACTAAGTTCAGAATCACGAGAAAACATACTTCTCCTTCTTAAACAATCCAACAAGCCATGTTTCATTTCAGGAGATGATGAACAGCTGCTGACATGCATTCATTCAAACGATCAAATCATCCTCCATGAACAGAAAAGGAAGCAAAAACAGAAACAAAAAGGAATAATGGGCCAAATTTTGTTGGGCCGAAGCAACGTCGTTATTCTGGGCCTTCAGAAAAGCCCAGTGAAATTAAGGCTTAAAAAAAAAATGGAAGTGTTTAAATTGGATAATGTGATGAAAGAGACAGGTTGAAAGGTCCCGGGTGGTTGGCTCTTTCATTTTCATTACATCATCGTACGACCATTTCCTCCTTGTTCTAACTGAAATTCGATTCCCAAAGAAATGATCCTTTTTTTCTCTCATTTTCATATTCATATTCTCTTTTGATTAATTATTACTTCTCCTTCACAAGTACTTCAACCACCGGAAGAGCCTACACCTTCTTGATCCCACACATTTTCCCTCCTATTCCTATTTTCCACCCACCAGACACACACACCATCCACTGTGGCAACGCTTCCTTAGTTCATGCAGCTTTCTCAACTTCTTCAAACCACCAATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAAAAGGGAGGACAAATGATTTGGTTCGTTTATTGTGCTGTTATGATTAACAATGCCTTTACATGTTTGTGTTTGATTTGAATTGTTCAAGAAACTCCTGGTGGTGTAAAAACTTTGTTTGAGGACTAAGCAGATGTTGCATTCCTAACTATATATAAATAAACCAAGTTTATCATGTGATATCAGATTATATCAATATTCTTCTTCAGGTT

Coding sequence (CDS)

ATGGACGACTCTGCAGGAAACTGGAATTGGCTCTTCGATTACTCTACAATGGAGGATCTCCCCGTCGTCGGCGCCCACTTCTCGCCGCCGCAGTCCGTCAGTTTCTCCTGGTCCAATCCCTCCATCAACTTTCCTTCTAATAAACACAGCCTTGAGGTAGACTGCTCATATGAAGATCTGGACAGCTTAAAGGAAGTAGGTCGGAAACGTCTAAAGGCTGAAACAAGTTCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTATCTGCTGTCCTGGAACCTGGAAAACTACCCAAAACAGACAAGGTTGTCATCTTGAGTGATGCTATCAGAATGGTGACTGATTTACAATGTGAAATCGAGAAGCTGAAAGAATCAGAGGATGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGATTGAGAGCAGAGAAAGAAAAATTGGAGCTGCAAATCAAAGCAGTGAATGCTCGAGCAGCAGCTGATATCCAACATCCTCCCCCTACGTTGTCAGCTGCTTTTACAGCACAAGGGCAAGCTGCTGGTAACAAGTTGATGCCTTTCATTGGTTATCCCGGCATTGCCATGTGGCAATTCTTGCCGCCTGCAACCGTCGACACGTCTCAGGATCATGTTCTCCGCCCACCAGTTGCTTAA

Protein sequence

MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA

Homology

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BLAST of CmoCh20G006060 vs. ExPASy Swiss-Prot
Match: Q9FH37 (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.1e-57
Identity = 125/211 (59.24%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 31  QSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVG-RKRLKAETSSASTSKACREKLR 90
           Q   FSW        S+  S  VD S  + ++ KE G +KR + E+SSA++SKACREK R
Sbjct: 24  QGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQR 83

Query: 91  RDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKEL 150
           RD+LN++F+EL A+LEPG  PKTDK  IL DA+RMVT L+ E +KLK+S   L++KIKEL
Sbjct: 84  RDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKEL 143

Query: 151 KVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMP 210
           K EKNELRDEKQRL+ EKEKLE Q+KA+NA   +    PP   +A  +AQGQA GNK++P
Sbjct: 144 KTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVP 203

Query: 211 FIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
            I YPG+AMWQF+PPA+VDTSQDHVLRPPVA
Sbjct: 204 IISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234

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BLAST of CmoCh20G006060 vs. ExPASy Swiss-Prot
Match: Q9C682 (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-52
Identity = 128/240 (53.33%), Postives = 159/240 (66.25%), Query Frame = 0


Query: 4   SAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSL 63
           S  N NWL DY      P++   FS  Q+ +F W        S   S+EVD    D D +
Sbjct: 3   SPENTNWLSDY------PLIEGAFS-DQNPTFPWQIDG----SATVSVEVDGFLCDADVI 62

Query: 64  KE-VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAI 123
           KE   RKR+K E+ + S SKACREK RRD+LN++F ELS+VLEPG+ PKTDKV I++DAI
Sbjct: 63  KEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAI 122

Query: 124 RMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAA 183
           RMV   + E +KLK+    L+EKIKELK EKNELRDEKQ+L+ EKE+++ Q+KA+  +  
Sbjct: 123 RMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQ 182

Query: 184 AD--IQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
                   P TLS     Q QA G+KL+PF  YPG AMWQF+PPA VDTSQDHVLRPPVA
Sbjct: 183 PQPCFLPNPQTLS-----QAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226

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BLAST of CmoCh20G006060 vs. ExPASy Swiss-Prot
Match: Q8L467 (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-31
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 70  RLKAETSSAST---SKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVT 129
           R +A T S S    +KACRE+LRR+KLNERF++LS+VLEPG+ PKTDK  IL DAIR++ 
Sbjct: 120 RKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILN 179

Query: 130 DLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQ 189
            L+ E  KL+E+   L E+IK LK EKNELR+EK  L+A+KEK E Q+K++ A ++  I 
Sbjct: 180 QLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIP 239

Query: 190 HPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           H P    AAF        NK+  +  Y  + MW ++P +  DTS+D  LRPP A
Sbjct: 240 HIP----AAFN------HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283

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BLAST of CmoCh20G006060 vs. ExPASy Swiss-Prot
Match: Q9LTC7 (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28
Identity = 87/180 (48.33%), Postives = 115/180 (63.89%), Query Frame = 0


Query: 64  KEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIR 123
           +E   KR +  + S   +KACREKLRR+KLN++F++LS+VLEPG+ PKTDK  IL DAIR
Sbjct: 149 EECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIR 208

Query: 124 MVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKA--VNARA 183
           +V  L+ E  +L+E+   L E+IK LK +KNELR+EK  L+AEKEK+E Q+K+  V +  
Sbjct: 209 VVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPG 268

Query: 184 AADIQHPPPTLSAAFTAQGQAAGNKLMPFIGY-PGIAMWQFLPPATVDTSQDHVLRPPVA 241
               QHP     AAF +   A      P+  Y P + MW  LPPA  DTS+D    PPVA
Sbjct: 269 FMPSQHP-----AAFHSHKMAVA---YPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320

[Close]

BLAST of CmoCh20G006060 vs. ExPASy Swiss-Prot
Match: Q9LT23 (Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.3e-13
Identity = 46/100 (46.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 74  ETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIE 133
           + S+  + KA REKLRR+KLNE F+EL  VL+P + PK DK  IL+D ++++ +L  E+ 
Sbjct: 55  DVSARKSQKAGREKLRREKLNEHFVELGNVLDPER-PKNDKATILTDTVQLLKELTSEVN 114

Query: 134 KLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQ 174
           KLK     L ++ +EL  EKN+LR+EK  L+++ E L LQ
Sbjct: 115 KLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ 153

[Close]

BLAST of CmoCh20G006060 vs. ExPASy TrEMBL
Match: A0A6J1FUV8 (transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111449017 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.6e-124
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE
Sbjct: 42  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 101

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV
Sbjct: 102 VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 161

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI
Sbjct: 162 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 221

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 222 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 276

[Close]

BLAST of CmoCh20G006060 vs. ExPASy TrEMBL
Match: A0A6J1J7A6 (transcription factor ILR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484113 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPS+KHSLEVDCSYEDLDSLKE
Sbjct: 30  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKE 89

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKA REKLRRDKLNERFLELSAVLEPGKLPKTDKV ILSDAIRM+
Sbjct: 90  VGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMM 149

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLE+QIKAVNARAAADI
Sbjct: 150 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADI 209

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 210 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 264

[Close]

BLAST of CmoCh20G006060 vs. ExPASy TrEMBL
Match: A0A6J1JDT6 (transcription factor ILR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484113 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPS+KHSLEVDCSYEDLDSLKE
Sbjct: 76  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKE 135

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKA REKLRRDKLNERFLELSAVLEPGKLPKTDKV ILSDAIRM+
Sbjct: 136 VGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMM 195

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLE+QIKAVNARAAADI
Sbjct: 196 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADI 255

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 256 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 310

[Close]

BLAST of CmoCh20G006060 vs. ExPASy TrEMBL
Match: A0A0A0LQH8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423590 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.1e-104
Identity = 203/240 (84.58%), Postives = 219/240 (91.25%), Query Frame = 0


Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MD+   NWNWLFDYST++DL VV   FSPPQS+SFSWSNPSINF S K SLEVDCSYEDL
Sbjct: 1   MDNPPPNWNWLFDYSTVDDLAVVDPRFSPPQSISFSWSNPSINFLS-KDSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DS KEVGRKRL+ ETS+ASTSKACREK RRDKLNERFLEL+AVLEPGK PK+DKV ILSD
Sbjct: 61  DSTKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKSDKVAILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRM+TDLQCE +KL+ES++DLK KIKELKVEKNELRDEKQRLRAEKEKLELQI+AVN R
Sbjct: 121 AIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
            AAD+QHPPPTLSAAFTAQGQ+AGNKLMPFIGYPGIAMWQFLPPA VD SQDHVLRPPVA
Sbjct: 181 -AADVQHPPPTLSAAFTAQGQSAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238

[Close]

BLAST of CmoCh20G006060 vs. ExPASy TrEMBL
Match: A0A5D3BGF0 (Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00470 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.5e-103
Identity = 204/240 (85.00%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MD    NWNWLFD STM+DL VV   FSPPQS+SFSWSNPSI+F S K SLEVDCSYEDL
Sbjct: 1   MDYPPPNWNWLFDCSTMDDLAVVDPRFSPPQSISFSWSNPSISFVS-KDSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DS KEVGRKRL+ ETS+ASTSKACREK RRDKLNERFLEL+AVLEPGK PKTDKV ILSD
Sbjct: 61  DSTKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKTDKVAILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRM+TDLQCE +KL+ES++DLK KIKELKVEKNELRDEKQRLRAEKEKLELQI+AVN R
Sbjct: 121 AIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
            AAD+QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPA VD SQDHVLRPPVA
Sbjct: 181 -AADVQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238

[Close]

BLAST of CmoCh20G006060 vs. NCBI nr
Match: KAG6570869.1 (Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 464.9 bits (1195), Expect = 4.1e-127
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL
Sbjct: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD
Sbjct: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR
Sbjct: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
           AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240

[Close]

BLAST of CmoCh20G006060 vs. NCBI nr
Match: KAG7010717.1 (Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463.8 bits (1192), Expect = 9.2e-127
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL
Sbjct: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELS+VLEPGKLPKTDKVVILSD
Sbjct: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSSVLEPGKLPKTDKVVILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR
Sbjct: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
           AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240

[Close]

BLAST of CmoCh20G006060 vs. NCBI nr
Match: XP_023512379.1 (transcription factor ILR3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.1 bits (1185), Expect = 6.0e-126
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MDDSAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60
           MDDSAGNWNWLFDYSTMEDLPVVGA FSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL
Sbjct: 1   MDDSAGNWNWLFDYSTMEDLPVVGAPFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDL 60

Query: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120
           DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD
Sbjct: 61  DSLKEVGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSD 120

Query: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180
           AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR
Sbjct: 121 AIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNAR 180

Query: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240
           AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 181 AAADIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 240

[Close]

BLAST of CmoCh20G006060 vs. NCBI nr
Match: XP_022944611.1 (transcription factor ILR3-like [Cucurbita moschata])

HSP 1 Score: 455.3 bits (1170), Expect = 3.3e-124
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE
Sbjct: 42  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 101

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV
Sbjct: 102 VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 161

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI
Sbjct: 162 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 221

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 222 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 276

[Close]

BLAST of CmoCh20G006060 vs. NCBI nr
Match: XP_022986343.1 (transcription factor ILR3-like isoform X1 [Cucurbita maxima] >XP_022986344.1 transcription factor ILR3-like isoform X1 [Cucurbita maxima] >XP_022986345.1 transcription factor ILR3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 3.4e-121
Identity = 230/235 (97.87%), Postives = 233/235 (99.15%), Query Frame = 0


Query: 6   GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKE 65
           GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPS+KHSLEVDCSYEDLDSLKE
Sbjct: 76  GNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSDKHSLEVDCSYEDLDSLKE 135

Query: 66  VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMV 125
           VGRKRLKAETSSASTSKA REKLRRDKLNERFLELSAVLEPGKLPKTDKV ILSDAIRM+
Sbjct: 136 VGRKRLKAETSSASTSKAWREKLRRDKLNERFLELSAVLEPGKLPKTDKVAILSDAIRMM 195

Query: 126 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADI 185
           TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLE+QIKAVNARAAADI
Sbjct: 196 TDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLEVQIKAVNARAAADI 255

Query: 186 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA
Sbjct: 256 QHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 310

[Close]

BLAST of CmoCh20G006060 vs. TAIR 10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 222.2 bits (565), Expect = 4.3e-58
Identity = 125/211 (59.24%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 31  QSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSLKEVG-RKRLKAETSSASTSKACREKLR 90
           Q   FSW        S+  S  VD S  + ++ KE G +KR + E+SSA++SKACREK R
Sbjct: 24  QGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQR 83

Query: 91  RDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKEL 150
           RD+LN++F+EL A+LEPG  PKTDK  IL DA+RMVT L+ E +KLK+S   L++KIKEL
Sbjct: 84  RDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKEL 143

Query: 151 KVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQHPPPTLSAAFTAQGQAAGNKLMP 210
           K EKNELRDEKQRL+ EKEKLE Q+KA+NA   +    PP   +A  +AQGQA GNK++P
Sbjct: 144 KTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVP 203

Query: 211 FIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
            I YPG+AMWQF+PPA+VDTSQDHVLRPPVA
Sbjct: 204 IISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234

[Close]

BLAST of CmoCh20G006060 vs. TAIR 10
Match: AT1G51070.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-53
Identity = 128/240 (53.33%), Postives = 159/240 (66.25%), Query Frame = 0


Query: 4   SAGNWNWLFDYSTMEDLPVVGAHFSPPQSVSFSWSNPSINFPSNKHSLEVDCSYEDLDSL 63
           S  N NWL DY      P++   FS  Q+ +F W        S   S+EVD    D D +
Sbjct: 3   SPENTNWLSDY------PLIEGAFS-DQNPTFPWQIDG----SATVSVEVDGFLCDADVI 62

Query: 64  KE-VGRKRLKAETSSASTSKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAI 123
           KE   RKR+K E+ + S SKACREK RRD+LN++F ELS+VLEPG+ PKTDKV I++DAI
Sbjct: 63  KEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAI 122

Query: 124 RMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAA 183
           RMV   + E +KLK+    L+EKIKELK EKNELRDEKQ+L+ EKE+++ Q+KA+  +  
Sbjct: 123 RMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQ 182

Query: 184 AD--IQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
                   P TLS     Q QA G+KL+PF  YPG AMWQF+PPA VDTSQDHVLRPPVA
Sbjct: 183 PQPCFLPNPQTLS-----QAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226

[Close]

BLAST of CmoCh20G006060 vs. TAIR 10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-51
Identity = 117/203 (57.64%), Postives = 145/203 (71.43%), Query Frame = 0


Query: 41  SINFPSNKHSLEVDCSYEDLDSLKE-VGRKRLKAETSSASTSKACREKLRRDKLNERFLE 100
           S + P  K S+EVD    D D +KE   RKR+K E+ + S SKACREK RRD+LN++F E
Sbjct: 95  SRSLPIAKGSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTE 154

Query: 101 LSAVLEPGKLPKTDKVVILSDAIRMVTDLQCEIEKLKESEDDLKEKIKELKVEKNELRDE 160
           LS+VLEPG+ PKTDKV I++DAIRMV   + E +KLK+    L+EKIKELK EKNELRDE
Sbjct: 155 LSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDE 214

Query: 161 KQRLRAEKEKLELQIKAVNARAAAD--IQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIA 220
           KQ+L+ EKE+++ Q+KA+  +          P TLS     Q QA G+KL+PF  YPG A
Sbjct: 215 KQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLS-----QAQAPGSKLVPFTTYPGFA 274

Query: 221 MWQFLPPATVDTSQDHVLRPPVA 241
           MWQF+PPA VDTSQDHVLRPPVA
Sbjct: 275 MWQFMPPAAVDTSQDHVLRPPVA 292

[Close]

BLAST of CmoCh20G006060 vs. TAIR 10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-32
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 70  RLKAETSSAST---SKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVT 129
           R +A T S S    +KACRE+LRR+KLNERF++LS+VLEPG+ PKTDK  IL DAIR++ 
Sbjct: 120 RKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILN 179

Query: 130 DLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQ 189
            L+ E  KL+E+   L E+IK LK EKNELR+EK  L+A+KEK E Q+K++ A ++  I 
Sbjct: 180 QLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIP 239

Query: 190 HPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           H P    AAF        NK+  +  Y  + MW ++P +  DTS+D  LRPP A
Sbjct: 240 HIP----AAFN------HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 283

[Close]

BLAST of CmoCh20G006060 vs. TAIR 10
Match: AT4G14410.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-32
Identity = 86/174 (49.43%), Postives = 115/174 (66.09%), Query Frame = 0


Query: 70  RLKAETSSAST---SKACREKLRRDKLNERFLELSAVLEPGKLPKTDKVVILSDAIRMVT 129
           R +A T S S    +KACRE+LRR+KLNERF++LS+VLEPG+ PKTDK  IL DAIR++ 
Sbjct: 114 RKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILN 173

Query: 130 DLQCEIEKLKESEDDLKEKIKELKVEKNELRDEKQRLRAEKEKLELQIKAVNARAAADIQ 189
            L+ E  KL+E+   L E+IK LK EKNELR+EK  L+A+KEK E Q+K++ A ++  I 
Sbjct: 174 QLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFIP 233

Query: 190 HPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPATVDTSQDHVLRPPVA 241
           H P    AAF        NK+  +  Y  + MW ++P +  DTS+D  LRPP A
Sbjct: 234 HIP----AAFN------HNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPPAA 277

The following BLAST results are available for this feature:

BLAST of CmoCh20G006060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH37	6.1e-57	59.24	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]
Q9C682	2.0e-52	53.33	Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=...	[more]
Q8L467	2.0e-31	49.43	Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=...	[more]
Q9LTC7	1.2e-28	48.33	Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1	[more]
Q9LT23	9.3e-13	46.00	Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=...	[more]

BLAST of CmoCh20G006060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUV8	1.6e-124	100.00	transcription factor ILR3-like OS=Cucurbita moschata OX=3662 GN=LOC111449017 PE=...	[more]
A0A6J1J7A6	1.6e-121	97.87	transcription factor ILR3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1JDT6	1.6e-121	97.87	transcription factor ILR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LQH8	3.1e-104	84.58	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G423590 PE=4 S...	[more]
A0A5D3BGF0	1.5e-103	85.00	Transcription factor ILR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CmoCh20G006060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570869.1	4.1e-127	100.00	Transcription factor ILR3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7010717.1	9.2e-127	99.58	Transcription factor ILR3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023512379.1	6.0e-126	99.58	transcription factor ILR3-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022944611.1	3.3e-124	100.00	transcription factor ILR3-like [Cucurbita moschata]	[more]
XP_022986343.1	3.4e-121	97.87	transcription factor ILR3-like isoform X1 [Cucurbita maxima] >XP_022986344.1 tra...	[more]

BLAST of CmoCh20G006060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54680.1	4.3e-58	59.24	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.1	1.4e-53	53.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.2	1.0e-51	57.64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.1	1.4e-32	49.43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.2	1.4e-32	49.43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..180
None	No IPR available	GENE3D	1.20.5.1000	arf6 gtpase in complex with a specific effector, jip4	coord: 127..181 e-value: 5.2E-5 score: 25.0
None	No IPR available	PANTHER	PTHR46133:SF10	BHLH DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 4..240
None	No IPR available	CDD	cd11446	bHLH_AtILR3_like	coord: 82..157 e-value: 9.74672E-36 score: 119.745
None	No IPR available	CDD	cd14686	bZIP	coord: 143..175 e-value: 0.00912238 score: 31.7469
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 83..134 e-value: 2.1E-8 score: 43.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 80..129 e-value: 2.9E-8 score: 33.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 77..128 score: 12.398151
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 68..126 e-value: 1.6E-7 score: 33.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 81..152
IPR044818	Transcription factor ILR3-like	PANTHER	PTHR46133	BHLH TRANSCRIPTION FACTOR	coord: 4..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G006060.1	CmoCh20G006060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055072	iron ion homeostasis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity