CmoCh19G011060.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G011060.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr19: 9436609 .. 9436932 (+)
Sequence length	324
RNA-Seq Expression	CmoCh19G011060.1
Synteny	CmoCh19G011060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACATGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA

mRNA sequence

ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACATGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA

Coding sequence (CDS)

ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACATGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA

Protein sequence

MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ

Homology

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA   +GA       +EYI +N 
Sbjct: 229 MISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNR 288

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            EL++ V TA+IDMY KCG I + L VFE  P +
Sbjct: 289 FELNSIVVTALIDMYCKCGCIEEGLNVFECAPKK 322

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy Swiss-Prot
Match: Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL ASTQ+G+LS     ++Y  KN 
Sbjct: 222 MITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNG 281

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
             L   + TA+IDMYSKCGS+  A +VF+ M  +
Sbjct: 282 FVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGK 315

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           ++ G+ +NG+  EA+++F +M+E   +P   T VSLL+A  Q GA+S     ++YI    
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKM 92
           L+L+  + TA+I++YS+CG +GKA +VF+KM
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKM 269

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY+R G F E+L++F +MQ   + P EFTMVS+L A   +G+L        YI KN 
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           ++    V  A+IDMY KCG   KA +VF  M  R
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQR 432

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY +NG+ ++A+ LF +MQ+    P+  T+  +L+A  Q+GALS     ++ ++  +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            E S  V+TA+I MY+KCGSI +A ++F+ M  +
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy TrEMBL
Match: A0A5A7SN44 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00010 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy TrEMBL
Match: A0A1S3BG64 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489661 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy TrEMBL
Match: A0A6J1JLQ0 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486336 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIQPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy TrEMBL
Match: A0A6J1ER84 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437074 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-33
Identity = 76/94 (80.85%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RI+PSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIRPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]

BLAST of CmoCh19G011060.1 vs. ExPASy TrEMBL
Match: A0A0A0K7F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G235760 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 77/94 (81.91%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           L+L+A V TAIIDMY KCGSIG ALQVFEK+P R
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCR 320

[Close]

BLAST of CmoCh19G011060.1 vs. NCBI nr
Match: KAG6572452.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLFVKMQEE IQPSEF+MVSLLNASTQIGALSAR M+NEY+KK N
Sbjct: 1   MIGGYVRNGMFKEALKLFVKMQEESIQPSEFSMVSLLNASTQIGALSARRMENEYVKKKN 60

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ 108
           LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ
Sbjct: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ 107

[Close]

BLAST of CmoCh19G011060.1 vs. NCBI nr
Match: KAA0032472.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17761.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]

BLAST of CmoCh19G011060.1 vs. NCBI nr
Match: XP_008447140.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]

BLAST of CmoCh19G011060.1 vs. NCBI nr
Match: XP_022989190.1 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIQPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]

BLAST of CmoCh19G011060.1 vs. NCBI nr
Match: XP_022930672.1 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita moschata])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 76/94 (80.85%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RI+PSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIRPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]

BLAST of CmoCh19G011060.1 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-21
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA   +GA       +EYI +N 
Sbjct: 229 MISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNR 288

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            EL++ V TA+IDMY KCG I + L VFE  P +
Sbjct: 289 FELNSIVVTALIDMYCKCGCIEEGLNVFECAPKK 322

[Close]

BLAST of CmoCh19G011060.1 vs. TAIR 10
Match: AT3G26630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL ASTQ+G+LS     ++Y  KN 
Sbjct: 222 MITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNG 281

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
             L   + TA+IDMYSKCGS+  A +VF+ M  +
Sbjct: 282 FVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGK 315

[Close]

BLAST of CmoCh19G011060.1 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16
Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           ++ G+ +NG+  EA+++F +M+E   +P   T VSLL+A  Q GA+S     ++YI    
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKM 92
           L+L+  + TA+I++YS+CG +GKA +VF+KM
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKM 269

[Close]

BLAST of CmoCh19G011060.1 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY+R G F E+L++F +MQ   + P EFTMVS+L A   +G+L        YI KN 
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           ++    V  A+IDMY KCG   KA +VF  M  R
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQR 432

[Close]

BLAST of CmoCh19G011060.1 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY +NG+ ++A+ LF +MQ+    P+  T+  +L+A  Q+GALS     ++ ++  +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            E S  V+TA+I MY+KCGSI +A ++F+ M  +
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484

The following BLAST results are available for this feature:

BLAST of CmoCh19G011060.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJG6	1.3e-19	52.13	Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop...	[more]
Q38959	4.0e-16	46.81	Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop...	[more]
P93011	2.6e-15	40.66	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX...	[more]
Q9LSB8	3.7e-14	44.68	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]
Q9SUH6	1.4e-13	38.30	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmoCh19G011060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SN44	2.0e-34	83.16	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BG64	2.0e-34	83.16	pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucumis ...	[more]
A0A6J1JLQ0	1.7e-33	81.91	pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbit...	[more]
A0A6J1ER84	4.9e-33	80.85	pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbit...	[more]
A0A0A0K7F6	1.4e-32	81.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G235760 PE=4 SV=1	[more]

BLAST of CmoCh19G011060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572452.1	2.9e-48	94.39	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
KAA0032472.1	4.1e-34	83.16	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17761...	[more]
XP_008447140.1	4.1e-34	83.16	PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ...	[more]
XP_022989190.1	3.5e-33	81.91	pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita ...	[more]
XP_022930672.1	1.0e-32	80.85	pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita ...	[more]

BLAST of CmoCh19G011060.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42920.1	9.4e-21	52.13	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G26630.1	2.8e-17	46.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	1.8e-16	40.66	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G15930.1	2.7e-15	44.68	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G30700.1	1.0e-14	38.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 69..95 e-value: 2.2E-5 score: 24.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 69..96 e-value: 1.1E-5 score: 23.3 coord: 1..30 e-value: 3.5E-8 score: 31.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 1..39 e-value: 7.1E-10 score: 38.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..28 score: 10.577712
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 64..98 score: 9.371969
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 49..103 e-value: 8.2E-7 score: 30.5 coord: 1..48 e-value: 1.2E-9 score: 39.7
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..95
None	No IPR available	PANTHER	PTHR47928:SF97	OS03G0635000 PROTEIN	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G011060	CmoCh19G011060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G011060.1:exon:848	CmoCh19G011060.1:exon:848	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G011060.1:cds	CmoCh19G011060.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G011060.1	CmoCh19G011060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding