CmoCh19G011060 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G011060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr19: 9436609 .. 9436932 (+)
RNA-Seq ExpressionCmoCh19G011060
SyntenyCmoCh19G011060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACATGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA

mRNA sequence

ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACATGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA

Coding sequence (CDS)

ATGATTGGTGGGTATGTTAGAAATGGGATGTTCAAAGAAGCTCTCAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTATGGTGAGCTTGTTAAATGCTTCAACTCAAATTGGAGCACTTTCGGCAAGGGGAATGGATAACGAGTACATAAAGAAGAACAATTTAGAGTTGAGTGCCAATGTAGCAACAGCGATCATAGACATGTACAGCAAATGTGGTAGCATAGGGAAGGCCCTTCAGGTGTTTGAGAAAATGCCCAACAGAGGATATTTAGTTGGAACTCCACGATCTTTGGCCTGGCAGTGA

Protein sequence

MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNNLELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ
Homology
[Close]
BLAST of CmoCh19G011060 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA   +GA       +EYI +N 
Sbjct: 229 MISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNR 288

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            EL++ V TA+IDMY KCG I + L VFE  P +
Sbjct: 289 FELNSIVVTALIDMYCKCGCIEEGLNVFECAPKK 322

[Close]
BLAST of CmoCh19G011060 vs. ExPASy Swiss-Prot
Match: Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-16
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL ASTQ+G+LS     ++Y  KN 
Sbjct: 222 MITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNG 281

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
             L   + TA+IDMYSKCGS+  A +VF+ M  +
Sbjct: 282 FVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGK 315

[Close]
BLAST of CmoCh19G011060 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           ++ G+ +NG+  EA+++F +M+E   +P   T VSLL+A  Q GA+S     ++YI    
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKM 92
           L+L+  + TA+I++YS+CG +GKA +VF+KM
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKM 269

[Close]
BLAST of CmoCh19G011060 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY+R G F E+L++F +MQ   + P EFTMVS+L A   +G+L        YI KN 
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           ++    V  A+IDMY KCG   KA +VF  M  R
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQR 432

[Close]
BLAST of CmoCh19G011060 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-13
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY +NG+ ++A+ LF +MQ+    P+  T+  +L+A  Q+GALS     ++ ++  +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            E S  V+TA+I MY+KCGSI +A ++F+ M  +
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484

[Close]
BLAST of CmoCh19G011060 vs. ExPASy TrEMBL
Match: A0A5A7SN44 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00010 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]
BLAST of CmoCh19G011060 vs. ExPASy TrEMBL
Match: A0A1S3BG64 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489661 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]
BLAST of CmoCh19G011060 vs. ExPASy TrEMBL
Match: A0A6J1JLQ0 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486336 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIQPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]
BLAST of CmoCh19G011060 vs. ExPASy TrEMBL
Match: A0A6J1ER84 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437074 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-33
Identity = 76/94 (80.85%), Postives = 85/94 (90.43%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RI+PSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIRPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]
BLAST of CmoCh19G011060 vs. ExPASy TrEMBL
Match: A0A0A0K7F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G235760 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 77/94 (81.91%), Postives = 82/94 (87.23%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           L+L+A V TAIIDMY KCGSIG ALQVFEK+P R
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCR 320

[Close]
BLAST of CmoCh19G011060 vs. NCBI nr
Match: KAG6572452.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLFVKMQEE IQPSEF+MVSLLNASTQIGALSAR M+NEY+KK N
Sbjct: 1   MIGGYVRNGMFKEALKLFVKMQEESIQPSEFSMVSLLNASTQIGALSARRMENEYVKKKN 60

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ 108
           LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ
Sbjct: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRGYLVGTPRSLAWQ 107

[Close]
BLAST of CmoCh19G011060 vs. NCBI nr
Match: KAA0032472.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17761.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]
BLAST of CmoCh19G011060 vs. NCBI nr
Match: XP_008447140.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNRG 96
           L+L+A V TAIIDMY KCGSIG ALQVFEK+PNRG
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPNRG 321

[Close]
BLAST of CmoCh19G011060 vs. NCBI nr
Match: XP_022989190.1 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 3.5e-33
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIQPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]
BLAST of CmoCh19G011060 vs. NCBI nr
Match: XP_022930672.1 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita moschata])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 76/94 (80.85%), Postives = 85/94 (90.43%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MIGG+VRNGMFKEALKLFVKMQE+RI+PSE+TMVSLLNAS QIGAL      +EYIKKNN
Sbjct: 227 MIGGHVRNGMFKEALKLFVKMQEQRIRPSEYTMVSLLNASAQIGALKQGEWIHEYIKKNN 286

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           +EL++ V TAIIDMYSKCGSIGKALQVFEK+PNR
Sbjct: 287 VELNSIVVTAIIDMYSKCGSIGKALQVFEKIPNR 320

[Close]
BLAST of CmoCh19G011060 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-21
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA   +GA       +EYI +N 
Sbjct: 229 MISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNR 288

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            EL++ V TA+IDMY KCG I + L VFE  P +
Sbjct: 289 FELNSIVVTALIDMYCKCGCIEEGLNVFECAPKK 322

[Close]
BLAST of CmoCh19G011060 vs. TAIR 10
Match: AT3G26630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-17
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL ASTQ+G+LS     ++Y  KN 
Sbjct: 222 MITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNG 281

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
             L   + TA+IDMYSKCGS+  A +VF+ M  +
Sbjct: 282 FVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGK 315

[Close]
BLAST of CmoCh19G011060 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16
Identity = 37/91 (40.66%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           ++ G+ +NG+  EA+++F +M+E   +P   T VSLL+A  Q GA+S     ++YI    
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKM 92
           L+L+  + TA+I++YS+CG +GKA +VF+KM
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKM 269

[Close]
BLAST of CmoCh19G011060 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 42/94 (44.68%), Postives = 55/94 (58.51%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY+R G F E+L++F +MQ   + P EFTMVS+L A   +G+L        YI KN 
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
           ++    V  A+IDMY KCG   KA +VF  M  R
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQR 432

[Close]
BLAST of CmoCh19G011060 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 1   MIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASTQIGALSARGMDNEYIKKNN 60
           MI GY +NG+ ++A+ LF +MQ+    P+  T+  +L+A  Q+GALS     ++ ++  +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 61  LELSANVATAIIDMYSKCGSIGKALQVFEKMPNR 95
            E S  V+TA+I MY+KCGSI +A ++F+ M  +
Sbjct: 451 FESSIYVSTALIGMYAKCGSIAEARRLFDLMTKK 484

The following BLAST results are available for this feature:
BLAST of CmoCh19G011060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJG61.3e-1952.13Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
Q389594.0e-1646.81Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop... [more]
P930112.6e-1540.66Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
Q9LSB83.7e-1444.68Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... [more]
Q9SUH61.4e-1338.30Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
BLAST of CmoCh19G011060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SN442.0e-3483.16Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BG642.0e-3483.16pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucumis ... [more]
A0A6J1JLQ01.7e-3381.91pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbit... [more]
A0A6J1ER844.9e-3380.85pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbit... [more]
A0A0A0K7F61.4e-3281.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G235760 PE=4 SV=1[more]
BLAST of CmoCh19G011060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572452.12.9e-4894.39Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
KAA0032472.14.1e-3483.16pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17761... [more]
XP_008447140.14.1e-3483.16PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
XP_022989190.13.5e-3381.91pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita ... [more]
XP_022930672.11.0e-3280.85pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita ... [more]
BLAST of CmoCh19G011060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G42920.19.4e-2152.13Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT3G26630.12.8e-1746.81Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G33760.11.8e-1640.66Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G15930.12.7e-1544.68Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G30700.11.0e-1438.30Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 69..95
e-value: 2.2E-5
score: 24.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 69..96
e-value: 1.1E-5
score: 23.3
coord: 1..30
e-value: 3.5E-8
score: 31.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 1..39
e-value: 7.1E-10
score: 38.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..28
score: 10.577712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 64..98
score: 9.371969
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 49..103
e-value: 8.2E-7
score: 30.5
coord: 1..48
e-value: 1.2E-9
score: 39.7
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..95
NoneNo IPR availablePANTHERPTHR47928:SF97OS03G0635000 PROTEINcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G011060.1CmoCh19G011060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding