Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTACAAACGTCAAAACAAGATCTTCAATGATTTCAAACATCCTCTGTTTTCTTGTTGCTCTGTTTTTCATCCTCTTATGGATCCTTCCATTATCCAATTACTCAATAAATTTCCCAACACCCATTTCCGTTTTCATCATCGGCAATCTGATCGTTGTCGTTCTCATCGGAGAATCCAAAGTTTTTGCTTCAAAAAGTTCGGATTGTTTTGCTGATAATCTCTGTTTTTATGATGGAACTTTGATTGTCGGAGGAGATGAAAACAGGGGTTTGAAGATTTGTCATGATGATGATGAATGGGAGATGGGTTTGGAGAATTGTGAGGATTTGAGTAAAAGAGCCGATGATTTCATTGCTAGAGTGAATATGCAGAGAGAAATTGAAGCTTCGATACTCTGTTTTTGTTGTGAATTGAAGACGACGAAGAACAAATATAGAAAGAAAGCTTTGAAATGTTTGACGAATCGTGTCAATGGCTGA
mRNA sequence
ATGGCTCTTACAAACGTCAAAACAAGATCTTCAATGATTTCAAACATCCTCTGTTTTCTTGTTGCTCTGTTTTTCATCCTCTTATGGATCCTTCCATTATCCAATTACTCAATAAATTTCCCAACACCCATTTCCGTTTTCATCATCGGCAATCTGATCGTTGTCGTTCTCATCGGAGAATCCAAAGTTTTTGCTTCAAAAAGTTCGGATTGTTTTGCTGATAATCTCTGTTTTTATGATGGAACTTTGATTGTCGGAGGAGATGAAAACAGGGGTTTGAAGATTTGTCATGATGATGATGAATGGGAGATGGGTTTGGAGAATTGTGAGGATTTGAGTAAAAGAGCCGATGATTTCATTGCTAGAGTGAATATGCAGAGAGAAATTGAAGCTTCGATACTCTGTTTTTGTTGTGAATTGAAGACGACGAAGAACAAATATAGAAAGAAAGCTTTGAAATGTTTGACGAATCGTGTCAATGGCTGA
Coding sequence (CDS)
ATGGCTCTTACAAACGTCAAAACAAGATCTTCAATGATTTCAAACATCCTCTGTTTTCTTGTTGCTCTGTTTTTCATCCTCTTATGGATCCTTCCATTATCCAATTACTCAATAAATTTCCCAACACCCATTTCCGTTTTCATCATCGGCAATCTGATCGTTGTCGTTCTCATCGGAGAATCCAAAGTTTTTGCTTCAAAAAGTTCGGATTGTTTTGCTGATAATCTCTGTTTTTATGATGGAACTTTGATTGTCGGAGGAGATGAAAACAGGGGTTTGAAGATTTGTCATGATGATGATGAATGGGAGATGGGTTTGGAGAATTGTGAGGATTTGAGTAAAAGAGCCGATGATTTCATTGCTAGAGTGAATATGCAGAGAGAAATTGAAGCTTCGATACTCTGTTTTTGTTGTGAATTGAAGACGACGAAGAACAAATATAGAAAGAAAGCTTTGAAATGTTTGACGAATCGTGTCAATGGCTGA
Protein sequence
MALTNVKTRSSMISNILCFLVALFFILLWILPLSNYSINFPTPISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG
Homology
BLAST of CmoCh18G002290.1 vs. ExPASy TrEMBL
Match:
A0A0A0LWQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051640 PE=4 SV=1)
HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 89/173 (51.45%), Postives = 111/173 (64.16%), Query Frame = 0
Query: 1 MALTNVKTRSSMISN-------------ILCFLVALFFILLWILPL------SNYSINFP 60
M LT ++T SS SN + CFL A LLWILP SNY INFP
Sbjct: 1 MGLTKIETSSSSKSNHSPVNNIIINILLLCCFLTA----LLWILPSSSLFHPSNYPINFP 60
Query: 61 TPISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDG----TLIVGGDENRGLKICH 120
TP VFI+GNLIVV+LIGESKVF+S + D F ++CFYDG TL+ GD R +
Sbjct: 61 TPTFVFILGNLIVVLLIGESKVFSSTTPDPFGFDICFYDGSFRETLVSEGDHKRTSESFD 120
Query: 121 DDDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKK 151
++DEWE+ N E+LSKRADDFIARVNMQR+IEA ++ +CC++ T K +Y KK
Sbjct: 121 EEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVMYCCDMMTMKKRYTKK 169
BLAST of CmoCh18G002290.1 vs. ExPASy TrEMBL
Match:
A0A5A7UM42 (Protoheme IX farnesyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004840 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 0
Query: 7 KTRSSMISNI------LCFLVALFFILLWILPL------------------SNYSINFPT 66
K+ S ++NI L FL ALF LLWI+PL NY INFPT
Sbjct: 15 KSNHSPVNNIIINILLLSFLTALFSTLLWIIPLLLPSSSLLSLFLSSLSHSFNYPINFPT 74
Query: 67 PISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDG----TLIVGGDENRGLKICHD 126
P VFI+GNLIVV+LIGESK+F+S + D F ++CFY G T + GD+ R + +
Sbjct: 75 PTFVFILGNLIVVLLIGESKIFSSTTPDPFGFDICFYGGSFLETSVSEGDQKRASESFDE 134
Query: 127 DDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKK 151
+DEWE+ N E+LSKRADDFIARVNMQR+IEA ++ +CC++ TTK +YRKK
Sbjct: 135 EDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVVYCCDMMTTKKRYRKK 186
BLAST of CmoCh18G002290.1 vs. ExPASy TrEMBL
Match:
A0A1S3BFF3 (uncharacterized protein LOC103489033 OS=Cucumis melo OX=3656 GN=LOC103489033 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 0
Query: 7 KTRSSMISNI------LCFLVALFFILLWILPL------------------SNYSINFPT 66
K+ S ++NI L FL ALF LLWI+PL NY INFPT
Sbjct: 15 KSNHSPVNNIIINILLLSFLTALFSTLLWIIPLLLPSSSLLSLFLSSLSHSFNYPINFPT 74
Query: 67 PISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDG----TLIVGGDENRGLKICHD 126
P VFI+GNLIVV+LIGESK+F+S + D F ++CFY G T + GD+ R + +
Sbjct: 75 PTFVFILGNLIVVLLIGESKIFSSTTPDPFGFDICFYGGSFLETSVSEGDQKRASESFDE 134
Query: 127 DDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKK 151
+DEWE+ N E+LSKRADDFIARVNMQR+IEA ++ +CC++ TTK +YRKK
Sbjct: 135 EDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVVYCCDMMTTKKRYRKK 186
BLAST of CmoCh18G002290.1 vs. ExPASy TrEMBL
Match:
A0A6J1CA01 (uncharacterized protein LOC111008810 OS=Momordica charantia OX=3673 GN=LOC111008810 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 3.8e-21
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = 0
Query: 5 NVKTRSSMISNILCFLVAL-----FFILLWILPLSNYSINFPTPISVFIIGNLIVVVLIG 64
N+ + + S +L FL AL FFI WILP S N PT SVF++GNLIV VL+G
Sbjct: 4 NIINNNIIHSFLLSFLTALVSGIFFFISFWILPFLQSSSNTPT-ASVFLLGNLIVAVLVG 63
Query: 65 ESKVFASKSSDCFA--DNLCFYDGTL------IVGGDENRGLKICHDDDEWEM-GLENCE 124
ESK+F+ K+ D D+ C +DG+ + D + G +I DEWEM L + E
Sbjct: 64 ESKMFSPKTCDSAVDDDDDCLFDGSFGECSIGEMEDDCDEGERI----DEWEMSNLGDRE 123
Query: 125 DLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNR 159
+LS+RADDFIARVNMQR+IEA+IL + CE T KYR++ + CL R
Sbjct: 124 ELSRRADDFIARVNMQRKIEATILSYGCEWTTMNKKYRRRRI-CLKQR 165
BLAST of CmoCh18G002290.1 vs. ExPASy TrEMBL
Match:
V4TA27 (DUF4408 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10032833mg PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 57/168 (33.93%), Postives = 82/168 (48.81%), Query Frame = 0
Query: 10 SSMISNILCFLVALFFILL------WILPLSNYSINFPTPISVFIIGNLIVVVLIGESKV 69
+++ ++ CF F LL + L + +P +F +GNLI+++LIGESK
Sbjct: 23 TALTCSVFCFSPFWFPYLLASIKAFLFVSLPKVGVVLLSPKVLFFVGNLIIIILIGESKF 82
Query: 70 FASKSSD----CFAD--------------NLCFYDGTLIVGGD--ENRGLKICHDDDEWE 129
FAS+SS C+ D + C + G D EN ++ D++E E
Sbjct: 83 FASESSPASDVCYDDYVSKSTRSVKNPSTDKCLTENVKKTGEDIGENVVMRKWVDEEEAE 142
Query: 130 MGLEN------------CEDLSKRADDFIARVNMQREIEASILCFCCE 140
+G EN E+LSKRADDFIARVN QR +EA +L C E
Sbjct: 143 VGAENGNNEEDDEVGFPAEELSKRADDFIARVNWQRRLEARLLLSCSE 190
BLAST of CmoCh18G002290.1 vs. NCBI nr
Match:
KAG7012326.1 (hypothetical protein SDJN02_25078, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 156/161 (96.89%), Postives = 158/161 (98.14%), Query Frame = 0
Query: 1 MALTNVKTRSSMISNILCFLVALFFILLWILPLSNYSINFPTPISVFIIGNLIVVVLIGE 60
MALTN+KTRSSMI+NILCFLVALFFILL LPLSNYSINFPTPISVFIIGNLIVVVLIGE
Sbjct: 1 MALTNIKTRSSMITNILCFLVALFFILLLFLPLSNYSINFPTPISVFIIGNLIVVVLIGE 60
Query: 61 SKVFASKSSDCFADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFI 120
SKVFASKSSD FADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFI
Sbjct: 61 SKVFASKSSDFFADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFI 120
Query: 121 ARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG 162
ARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG
Sbjct: 121 ARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG 161
BLAST of CmoCh18G002290.1 vs. NCBI nr
Match:
KAG6573141.1 (hypothetical protein SDJN03_27028, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 156/161 (96.89%), Postives = 158/161 (98.14%), Query Frame = 0
Query: 1 MALTNVKTRSSMISNILCFLVALFFILLWILPLSNYSINFPTPISVFIIGNLIVVVLIGE 60
MALTN+KTRSSMI+NILCFLVALFFILL LPLSNYSINFPTPISVFIIGNLIVVVLIGE
Sbjct: 12 MALTNIKTRSSMITNILCFLVALFFILLLFLPLSNYSINFPTPISVFIIGNLIVVVLIGE 71
Query: 61 SKVFASKSSDCFADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFI 120
SKVFASKSSD FADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFI
Sbjct: 72 SKVFASKSSDFFADNLCFYDGTLIVGGDENRGLKICHDDDEWEMGLENCEDLSKRADDFI 131
Query: 121 ARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG 162
ARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG
Sbjct: 132 ARVNMQREIEASILCFCCELKTTKNKYRKKALKCLTNRVNG 172
BLAST of CmoCh18G002290.1 vs. NCBI nr
Match:
XP_011660360.1 (uncharacterized protein LOC105436383 [Cucumis sativus])
HSP 1 Score: 151.0 bits (380), Expect = 8.9e-33
Identity = 89/173 (51.45%), Postives = 111/173 (64.16%), Query Frame = 0
Query: 1 MALTNVKTRSSMISN-------------ILCFLVALFFILLWILPL------SNYSINFP 60
M LT ++T SS SN + CFL A LLWILP SNY INFP
Sbjct: 1 MGLTKIETSSSSKSNHSPVNNIIINILLLCCFLTA----LLWILPSSSLFHPSNYPINFP 60
Query: 61 TPISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDG----TLIVGGDENRGLKICH 120
TP VFI+GNLIVV+LIGESKVF+S + D F ++CFYDG TL+ GD R +
Sbjct: 61 TPTFVFILGNLIVVLLIGESKVFSSTTPDPFGFDICFYDGSFRETLVSEGDHKRTSESFD 120
Query: 121 DDDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKK 151
++DEWE+ N E+LSKRADDFIARVNMQR+IEA ++ +CC++ T K +Y KK
Sbjct: 121 EEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVMYCCDMMTMKKRYTKK 169
BLAST of CmoCh18G002290.1 vs. NCBI nr
Match:
XP_008446247.1 (PREDICTED: uncharacterized protein LOC103489033 [Cucumis melo] >KAA0055346.1 Protoheme IX farnesyltransferase [Cucumis melo var. makuwa] >TYJ99272.1 Protoheme IX farnesyltransferase [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 4.4e-32
Identity = 85/172 (49.42%), Postives = 110/172 (63.95%), Query Frame = 0
Query: 7 KTRSSMISNI------LCFLVALFFILLWILPL------------------SNYSINFPT 66
K+ S ++NI L FL ALF LLWI+PL NY INFPT
Sbjct: 15 KSNHSPVNNIIINILLLSFLTALFSTLLWIIPLLLPSSSLLSLFLSSLSHSFNYPINFPT 74
Query: 67 PISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDG----TLIVGGDENRGLKICHD 126
P VFI+GNLIVV+LIGESK+F+S + D F ++CFY G T + GD+ R + +
Sbjct: 75 PTFVFILGNLIVVLLIGESKIFSSTTPDPFGFDICFYGGSFLETSVSEGDQKRASESFDE 134
Query: 127 DDEWEMGLENCEDLSKRADDFIARVNMQREIEASILCFCCELKTTKNKYRKK 151
+DEWE+ N E+LSKRADDFIARVNMQR+IEA ++ +CC++ TTK +YRKK
Sbjct: 135 EDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVVYCCDMMTTKKRYRKK 186
BLAST of CmoCh18G002290.1 vs. NCBI nr
Match:
KGN64433.2 (hypothetical protein Csa_013667 [Cucumis sativus])
HSP 1 Score: 132.9 bits (333), Expect = 2.5e-27
Identity = 82/154 (53.25%), Postives = 98/154 (63.64%), Query Frame = 0
Query: 1 MALTNVKTRSSMISN-------------ILCFLVALFFILLWILPL------SNYSINFP 60
M LT ++T SS SN + CFL A LLWILP SNY INFP
Sbjct: 1 MGLTKIETSSSSKSNHSPVNNIIINILLLCCFLTA----LLWILPSSSLFHPSNYPINFP 60
Query: 61 TPISVFIIGNLIVVVLIGESKVFASKSSDCFADNLCFYDG----TLIVGGDENRGLKICH 120
TP VFI+GNLIVV+LIGESKVF+S + D F ++CFYDG TL+ GD R +
Sbjct: 61 TPTFVFILGNLIVVLLIGESKVFSSTTPDPFGFDICFYDGSFRETLVSEGDHKRTSESFD 120
Query: 121 DDDEWEMGLENCEDLSKRADDFIARVNMQREIEA 132
++DEWE+ N E+LSKRADDFIARVNMQR+IEA
Sbjct: 121 EEDEWEIESVNSEELSKRADDFIARVNMQRKIEA 150
BLAST of CmoCh18G002290.1 vs. TAIR 10
Match:
AT5G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 41.6 bits (96), Expect = 7.1e-04
Identity = 37/122 (30.33%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 25 FILLWILPLSNYSINFPTPISVFIIGNLIVVVLIGESKVFASKSS-------DCFADNLC 84
F L I + NY +N P +FI+ N+IV++LIGES++ +SS + L
Sbjct: 56 FFLFTIPRVINYILN---PKVLFILTNVIVIILIGESRISRPRSSLPASALLRSHSYGLW 115
Query: 85 FYDGTLIVGG-----DENRGLKICHDDDEWEMGLENCEDLSKRADDFIARVNMQREIEAS 135
+ + G +EN + ++ + L++RADD IARVN QR +E
Sbjct: 116 SNENVRVEMGYQRFLEENIDRPRLGEGKICKLSPLEMDSLNQRADDLIARVNRQRRLEIG 174
BLAST of CmoCh18G002290.1 vs. TAIR 10
Match:
AT5G50710.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 41.6 bits (96), Expect = 7.1e-04
Identity = 37/122 (30.33%), Postives = 59/122 (48.36%), Query Frame = 0
Query: 25 FILLWILPLSNYSINFPTPISVFIIGNLIVVVLIGESKVFASKSS-------DCFADNLC 84
F L I + NY +N P +FI+ N+IV++LIGES++ +SS + L
Sbjct: 56 FFLFTIPRVINYILN---PKVLFILTNVIVIILIGESRISRPRSSLPASALLRSHSYGLW 115
Query: 85 FYDGTLIVGG-----DENRGLKICHDDDEWEMGLENCEDLSKRADDFIARVNMQREIEAS 135
+ + G +EN + ++ + L++RADD IARVN QR +E
Sbjct: 116 SNENVRVEMGYQRFLEENIDRPRLGEGKICKLSPLEMDSLNQRADDLIARVNRQRRLEIG 174
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LWQ9 | 4.3e-33 | 51.45 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051640 PE=4 SV=1 | [more] |
A0A5A7UM42 | 2.1e-32 | 49.42 | Protoheme IX farnesyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3BFF3 | 2.1e-32 | 49.42 | uncharacterized protein LOC103489033 OS=Cucumis melo OX=3656 GN=LOC103489033 PE=... | [more] |
A0A6J1CA01 | 3.8e-21 | 46.43 | uncharacterized protein LOC111008810 OS=Momordica charantia OX=3673 GN=LOC111008... | [more] |
V4TA27 | 1.6e-08 | 33.93 | DUF4408 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v100328... | [more] |
Match Name | E-value | Identity | Description | |
KAG7012326.1 | 2.5e-80 | 96.89 | hypothetical protein SDJN02_25078, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6573141.1 | 2.5e-80 | 96.89 | hypothetical protein SDJN03_27028, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_011660360.1 | 8.9e-33 | 51.45 | uncharacterized protein LOC105436383 [Cucumis sativus] | [more] |
XP_008446247.1 | 4.4e-32 | 49.42 | PREDICTED: uncharacterized protein LOC103489033 [Cucumis melo] >KAA0055346.1 Pro... | [more] |
KGN64433.2 | 2.5e-27 | 53.25 | hypothetical protein Csa_013667 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
AT5G50610.1 | 7.1e-04 | 30.33 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT5G50710.1 | 7.1e-04 | 30.33 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |