CmoCh16G005510.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G005510.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 2666733 .. 2669551 (+)
Sequence length1846
RNA-Seq ExpressionCmoCh16G005510.1
SyntenyCmoCh16G005510.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTAACCAACTGGTTAAAGTGGGGAATTGCAGAATGGCAGCCACCGCCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACCTCAGGTCTCTCTCCCCATCTCTCATGATTTTGCAGAATTTTTAAGGTACGAATGATGAGATTTTTTTTTTTTACGCCTGGCCTATTTCAGGGGAACGACTTTCCTTTCTTCAAGTTTTTGAAATTAGGTTTTAATGTAATGATATTCCGATGAAGAAAATCTAATATATTGAATGTATTTGGTTCGATTTTTGAGTTTATAGTGCTACTTTCTACCTTCTGCTTCCCGTTCTTTATGATCGGACTCCTTTTCTTTTACTTTCCAGTTTGTACTGATGTATAAGTATCACTGCTGTTATTGCTTGTGTTCATCTTGTCTTTCATTCTGTAATCTGTTGTCTTGACGTTAATACATCACTTTGATCAGTTAGTTGTATTGTACGTCTGTTTTCTTAGCAAACACATCTTTCGGTTGCAATTGTCTTGTCCACTGCTGACTTTTAGCTATTGCCATTATGTAAATCCTTATTCACATGTTAATTGTCTTATCAGATTAGTTAAATCAAAATTATTTGCTAATAAAGGATCGGTTTGCTTTATTCCTGTTCCCACTACCTTAGTATTGGTATCATATTGCTTTAAGATGCGACAATGAGGAGATTTACTTTTCTAAGGAAATTCATATATCTCCGTCTTAGTGAATGAGGATTTAATGGAGAGGGGACAAGTTGGCTGAGAATGATTGGTAAGATAATATTCCAATTTTAATGTTGAACTATGTTTTGGGACAATTTTAAGCCTTTAAGAATAATGGTTTGTGGCAGATGGTTGTTGTATTTCAGACAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAAAAGAGATTCATTAACTTAGTGGTTAGCTTGTTTGAGCAGATGACCTTCTGTGTATTTTGATTACTGAAAGATAAAGAAAGTATTATAACAGGTGAATTTACTATGTTGAGAATTTCAGTTGACAGTTCCTTTAGGAAGAGAGTGGGAGGTTGATAGAAGAAGAGAGAACCTTAGTTATATTCAAACTTGAAGACCCTAAATATCTCGAACTGGGCGGAAGCAAATCCGACAATCAGACAAATGTTGCTGTGAACTATTGGCAAACTCTAGGAAGCATGGATACAACATGACATTGACACGACAAGGGCACGTTTATTAAAATATACATTTTATAACTTATGTATCATTTTTGTATTAGAAGGAAATTCAAAGTCAATGAGTTTATACATCTAAATGCTTAAAAATGAGTTTGATTTATTTTACTTTAAGTGTTTAATGCATGTTTAACAAATATTGGATCTACTTTGACTTTGTATGACTAGTGTCTACAACATCTATTGCACTAACAAGTGTTTGGTACGTGTCTAACAAGTGTTGCAGTGTCAAGTGACCGACACATGTCAGACATGGATACGCTGGCCATACTAAAGTGTTCGTGCTTCTTAGGGCATACTCCTCAAATACTGAAATTATTACTCATTATTCCCTTTAGTTTTTGCGCAAAGAGTTAGATTTCATCCTGAAAATAGGATTATCTTGATTGAACTTCTATTCTTGATCAACTTTGTTTAGCCTCACATTTATTTTAGATTTGTTTTGTTCACTAAAAGGTAGAAATATTTGCTTGCTCGTGTATTTCTTTTTGGGATGGAATTGTAGATGTGTTGAGAGTTATTTGGTATGCAGAGCCCTGGGATTGGAAAGGACCGGATCTGGGAAGAAAACTTAAAAGCCATATTACACGGTAAAGACAGAGTTGGGATGGCAGAGTTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGAACGTCAAAAAGATATCAGGTCATCAGGGATCTACATTGTTTTTTCTTCATCTTTTTTTGTTAAAACCACACGTGAAATCGTTGCTCTTTTTCTTTCCTAAACTATGTCTTGTTCAGGTAATAACATGCTAAACTTTGTCCTGTATTTACATCATTTTCTTTTTTTCTTTTCCCTACATGTTAGGCATGACAGCAGACGAGGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAACATCTTTTTACTCTTCCATTCCTCTTCAAAAACCTCGTGCTTTTCGTATCTTGATCTTGCATTTGTCTGTTCAATATCACTGTCAGTGCTGCAGAAGTGTACTTTTTGAGTTGATGAATGGAGCTCGAAGATGCTCAGTGGTTTTGTTGGATTCAAACTTGCAGCCTTTCCGGTGAGCCCCATTTAACAAATTCATCTATGAAAGACTGATTTAAGAAAGTGTCTTTCTGATACTTCCATGTTTTGGTTTTCGTTCTTCTTGACATCTTTATTTCAAGTGCGTTAGTAGGTTGTTCTGACCTGAAAATTAAGCATACTTTGCTGAATCTGGAAGAATAGATTATCTTCCCTTTACTTTATAGCATCTGCTGATCTGACCTGAAATTTATAGCCTTGAGTGCATAATCTATCTGGATTCTCTTTGGTTTCTTG

mRNA sequence

CATTAACCAACTGGTTAAAGTGGGGAATTGCAGAATGGCAGCCACCGCCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACCTCAGGTCTCTCTCCCCATCTCTCATGATTTTGCAGAATTTTTAAGATGGTTGTTGTATTTCAGACAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAAAAGAGATTCATTAACTTAGTGGTTAGCTTGTTTGAGCAGATGACCTTCTGTGTATTTTGATTACTGAAAGATAAAGAAAGTATTATAACAGGTGAATTTACTATGTTGAGAATTTCAGTTGACAGTTCCTTTAGGAAGAGAGTGGGAGGTTGATAGAAGAAGAGAGAACCTTAGTTATATTCAAACTTGAAGACCCTAAATATCTCGAACTGGGCGGAAGCAAATCCGACAATCAGACAAATGTTGCTGTGAACTATTGGCAAACTCTAGGAAGCATGGATACAACATGACATTGACACGACAAGGGCACGTTTATTAAAATATACATTTTATAACTTATGTATCATTTTTGTATTAGAAGGAAATTCAAAGTCAATGAGTTTATACATCTAAATGCTTAAAAATGAGTTTGATTTATTTTACTTTAAGTGTTTAATGCATGTTTAACAAATATTGGATCTACTTTGACTTTGTATGACTAGTGTCTACAACATCTATTGCACTAACAAGTGTTTGGTACGTGTCTAACAAGTGTTGCAGTGTCAAGTGACCGACACATGTCAGACATGGATACGCTGGCCATACTAAAGTGTTCGTGCTTCTTAGGGCATACTCCTCAAATACTGAAATTATTACTCATTATTCCCTTTAGTTTTTGCGCAAAGAGTTAGATTTCATCCTGAAAATAGGATTATCTTGATTGAACTTCTATTCTTGATCAACTTTGTTTAGCCTCACATTTATTTTAGATTTGTTTTGTTCACTAAAAGGTAGAAATATTTGCTTGCTCGTGTATTTCTTTTTGGGATGGAATTGTAGATGTGTTGAGAGTTATTTGGTATGCAGAGCCCTGGGATTGGAAAGGACCGGATCTGGGAAGAAAACTTAAAAGCCATATTACACGGTAAAGACAGAGTTGGGATGGCAGAGTTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGAACGTCAAAAAGATATCAGGCATGACAGCAGACGAGGGCAAAGTGGATAGGCTCTGGCCATTTTGTGCTGCAGAAGTGTACTTTTTGAGTTGATGAATGGAGCTCGAAGATGCTCAGTGGTTTTGTTGGATTCAAACTTGCAGCCTTTCCGGTGAGCCCCATTTAACAAATTCATCTATGAAAGACTGATTTAAGAAAGTGTCTTTCTGATACTTCCATGTTTTGGTTTTCGTTCTTCTTGACATCTTTATTTCAAGTGCGTTAGTAGGTTGTTCTGACCTGAAAATTAAGCATACTTTGCTGAATCTGGAAGAATAGATTATCTTCCCTTTACTTTATAGCATCTGCTGATCTGACCTGAAATTTATAGCCTTGAGTGCATAATCTATCTGGATTCTCTTTGGTTTCTTG

Coding sequence (CDS)

ATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACCTCAGGTCTCTCTCCCCATCTCTCATGATTTTGCAGAATTTTTAAGATGGTTGTTGTATTTCAGACAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAA

Protein sequence

MAPAKISVGARLLSQKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQPQVSLPISHDFAEFLRWLLYFRQERENVIAVQKFTNACWRKGKPGIGEK
Homology
[Close]
BLAST of CmoCh16G005510.1 vs. ExPASy TrEMBL
Match: A0A6J1C7G5 (uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008113 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQPQ 53
          MAPAKI+V A +LS+K+Q KPQLCKFLGIPLV+PRGDIPILI+KFLK YQPQ
Sbjct: 1  MAPAKITVAAHILSKKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQ 52

The following BLAST results are available for this feature:
BLAST of CmoCh16G005510.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G005510.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7G53.2e-1580.77uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
BLAST of CmoCh16G005510.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh16G005510CmoCh16G005510gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G005510.1:exon:11205CmoCh16G005510.1:exon:11205exon
CmoCh16G005510.1:exon:11206CmoCh16G005510.1:exon:11206exon
CmoCh16G005510.1:exon:11207CmoCh16G005510.1:exon:11207exon
CmoCh16G005510.1:exon:11208CmoCh16G005510.1:exon:11208exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G005510.1:five_prime_utrCmoCh16G005510.1:five_prime_utrfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G005510.1:cdsCmoCh16G005510.1:cdsCDS
CmoCh16G005510.1:cdsCmoCh16G005510.1:cds_2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G005510.1:three_prime_utrCmoCh16G005510.1:three_prime_utrthree_prime_UTR
CmoCh16G005510.1:three_prime_utrCmoCh16G005510.1:three_prime_utr_2three_prime_UTR
CmoCh16G005510.1:three_prime_utrCmoCh16G005510.1:three_prime_utr_3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh16G005510.1CmoCh16G005510.1-proteinpolypeptide