CmoCh16G005510 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G005510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 2666733 .. 2669551 (+)
RNA-Seq ExpressionCmoCh16G005510
SyntenyCmoCh16G005510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTAACCAACTGGTTAAAGTGGGGAATTGCAGAATGGCAGCCACCGCCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACCTCAGGTCTCTCTCCCCATCTCTCATGATTTTGCAGAATTTTTAAGGTACGAATGATGAGATTTTTTTTTTTTACGCCTGGCCTATTTCAGGGGAACGACTTTCCTTTCTTCAAGTTTTTGAAATTAGGTTTTAATGTAATGATATTCCGATGAAGAAAATCTAATATATTGAATGTATTTGGTTCGATTTTTGAGTTTATAGTGCTACTTTCTACCTTCTGCTTCCCGTTCTTTATGATCGGACTCCTTTTCTTTTACTTTCCAGTTTGTACTGATGTATAAGTATCACTGCTGTTATTGCTTGTGTTCATCTTGTCTTTCATTCTGTAATCTGTTGTCTTGACGTTAATACATCACTTTGATCAGTTAGTTGTATTGTACGTCTGTTTTCTTAGCAAACACATCTTTCGGTTGCAATTGTCTTGTCCACTGCTGACTTTTAGCTATTGCCATTATGTAAATCCTTATTCACATGTTAATTGTCTTATCAGATTAGTTAAATCAAAATTATTTGCTAATAAAGGATCGGTTTGCTTTATTCCTGTTCCCACTACCTTAGTATTGGTATCATATTGCTTTAAGATGCGACAATGAGGAGATTTACTTTTCTAAGGAAATTCATATATCTCCGTCTTAGTGAATGAGGATTTAATGGAGAGGGGACAAGTTGGCTGAGAATGATTGGTAAGATAATATTCCAATTTTAATGTTGAACTATGTTTTGGGACAATTTTAAGCCTTTAAGAATAATGGTTTGTGGCAGATGGTTGTTGTATTTCAGACAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAAAAGAGATTCATTAACTTAGTGGTTAGCTTGTTTGAGCAGATGACCTTCTGTGTATTTTGATTACTGAAAGATAAAGAAAGTATTATAACAGGTGAATTTACTATGTTGAGAATTTCAGTTGACAGTTCCTTTAGGAAGAGAGTGGGAGGTTGATAGAAGAAGAGAGAACCTTAGTTATATTCAAACTTGAAGACCCTAAATATCTCGAACTGGGCGGAAGCAAATCCGACAATCAGACAAATGTTGCTGTGAACTATTGGCAAACTCTAGGAAGCATGGATACAACATGACATTGACACGACAAGGGCACGTTTATTAAAATATACATTTTATAACTTATGTATCATTTTTGTATTAGAAGGAAATTCAAAGTCAATGAGTTTATACATCTAAATGCTTAAAAATGAGTTTGATTTATTTTACTTTAAGTGTTTAATGCATGTTTAACAAATATTGGATCTACTTTGACTTTGTATGACTAGTGTCTACAACATCTATTGCACTAACAAGTGTTTGGTACGTGTCTAACAAGTGTTGCAGTGTCAAGTGACCGACACATGTCAGACATGGATACGCTGGCCATACTAAAGTGTTCGTGCTTCTTAGGGCATACTCCTCAAATACTGAAATTATTACTCATTATTCCCTTTAGTTTTTGCGCAAAGAGTTAGATTTCATCCTGAAAATAGGATTATCTTGATTGAACTTCTATTCTTGATCAACTTTGTTTAGCCTCACATTTATTTTAGATTTGTTTTGTTCACTAAAAGGTAGAAATATTTGCTTGCTCGTGTATTTCTTTTTGGGATGGAATTGTAGATGTGTTGAGAGTTATTTGGTATGCAGAGCCCTGGGATTGGAAAGGACCGGATCTGGGAAGAAAACTTAAAAGCCATATTACACGGTAAAGACAGAGTTGGGATGGCAGAGTTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGAACGTCAAAAAGATATCAGGTCATCAGGGATCTACATTGTTTTTTCTTCATCTTTTTTTGTTAAAACCACACGTGAAATCGTTGCTCTTTTTCTTTCCTAAACTATGTCTTGTTCAGGTAATAACATGCTAAACTTTGTCCTGTATTTACATCATTTTCTTTTTTTCTTTTCCCTACATGTTAGGCATGACAGCAGACGAGGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAACATCTTTTTACTCTTCCATTCCTCTTCAAAAACCTCGTGCTTTTCGTATCTTGATCTTGCATTTGTCTGTTCAATATCACTGTCAGTGCTGCAGAAGTGTACTTTTTGAGTTGATGAATGGAGCTCGAAGATGCTCAGTGGTTTTGTTGGATTCAAACTTGCAGCCTTTCCGGTGAGCCCCATTTAACAAATTCATCTATGAAAGACTGATTTAAGAAAGTGTCTTTCTGATACTTCCATGTTTTGGTTTTCGTTCTTCTTGACATCTTTATTTCAAGTGCGTTAGTAGGTTGTTCTGACCTGAAAATTAAGCATACTTTGCTGAATCTGGAAGAATAGATTATCTTCCCTTTACTTTATAGCATCTGCTGATCTGACCTGAAATTTATAGCCTTGAGTGCATAATCTATCTGGATTCTCTTTGGTTTCTTG

mRNA sequence

CATTAACCAACTGGTTAAAGTGGGGAATTGCAGAATGGCAGCCACCGCCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACCTCAGGTCTCTCTCCCCATCTCTCATGATTTTGCAGAATTTTTAAGATGGTTGTTGTATTTCAGACAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAAAAGAGATTCATTAACTTAGTGGTTAGCTTGTTTGAGCAGATGACCTTCTGTGTATTTTGATTACTGAAAGATAAAGAAAGTATTATAACAGGTGAATTTACTATGTTGAGAATTTCAGTTGACAGTTCCTTTAGGAAGAGAGTGGGAGGTTGATAGAAGAAGAGAGAACCTTAGTTATATTCAAACTTGAAGACCCTAAATATCTCGAACTGGGCGGAAGCAAATCCGACAATCAGACAAATGTTGCTGTGAACTATTGGCAAACTCTAGGAAGCATGGATACAACATGACATTGACACGACAAGGGCACGTTTATTAAAATATACATTTTATAACTTATGTATCATTTTTGTATTAGAAGGAAATTCAAAGTCAATGAGTTTATACATCTAAATGCTTAAAAATGAGTTTGATTTATTTTACTTTAAGTGTTTAATGCATGTTTAACAAATATTGGATCTACTTTGACTTTGTATGACTAGTGTCTACAACATCTATTGCACTAACAAGTGTTTGGTACGTGTCTAACAAGTGTTGCAGTGTCAAGTGACCGACACATGTCAGACATGGATACGCTGGCCATACTAAAGTGTTCGTGCTTCTTAGGGCATACTCCTCAAATACTGAAATTATTACTCATTATTCCCTTTAGTTTTTGCGCAAAGAGTTAGATTTCATCCTGAAAATAGGATTATCTTGATTGAACTTCTATTCTTGATCAACTTTGTTTAGCCTCACATTTATTTTAGATTTGTTTTGTTCACTAAAAGGTAGAAATATTTGCTTGCTCGTGTATTTCTTTTTGGGATGGAATTGTAGATGTGTTGAGAGTTATTTGGTATGCAGAGCCCTGGGATTGGAAAGGACCGGATCTGGGAAGAAAACTTAAAAGCCATATTACACGGTAAAGACAGAGTTGGGATGGCAGAGTTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGAACGTCAAAAAGATATCAGGCATGACAGCAGACGAGGGCAAAGTGGATAGGCTCTGGCCATTTTGTGCTGCAGAAGTGTACTTTTTGAGTTGATGAATGGAGCTCGAAGATGCTCAGTGGTTTTGTTGGATTCAAACTTGCAGCCTTTCCGGTGAGCCCCATTTAACAAATTCATCTATGAAAGACTGATTTAAGAAAGTGTCTTTCTGATACTTCCATGTTTTGGTTTTCGTTCTTCTTGACATCTTTATTTCAAGTGCGTTAGTAGGTTGTTCTGACCTGAAAATTAAGCATACTTTGCTGAATCTGGAAGAATAGATTATCTTCCCTTTACTTTATAGCATCTGCTGATCTGACCTGAAATTTATAGCCTTGAGTGCATAATCTATCTGGATTCTCTTTGGTTTCTTG

Coding sequence (CDS)

ATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACCTCAGGTCTCTCTCCCCATCTCTCATGATTTTGCAGAATTTTTAAGATGGTTGTTGTATTTCAGACAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAA

Protein sequence

MAPAKISVGARLLSQKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQPQVSLPISHDFAEFLRWLLYFRQERENVIAVQKFTNACWRKGKPGIGEK
Homology
BLAST of CmoCh16G005510 vs. ExPASy TrEMBL
Match: A0A6J1C7G5 (uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008113 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0

Query: 1  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQPQ 53
          MAPAKI+V A +LS+K+Q KPQLCKFLGIPLV+PRGDIPILI+KFLK YQPQ
Sbjct: 1  MAPAKITVAAHILSKKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQ 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C7G53.2e-1580.77uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G005510.1CmoCh16G005510.1mRNA