CmoCh15G005870.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G005870.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr15: 2836289 .. 2837293 (+)
Sequence length	261
RNA-Seq Expression	CmoCh15G005870.1
Synteny	CmoCh15G005870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGTGAGATGTTCGATTTGATTATTGATTTTTGTTCAACTTTTGCGCAGGAGATTGTAGATTTGAATTCGTTATCGGAGTTTTTGAACGCGTTTGAGCGTTTCAGAACAAAAGCTGAAAGTTATATCTTATCGAGTTTCGTGAAGATTAGAATAACGGCGGAAGATTCTTTCCATGTGGTCCGGTAGCTCTTTATTTCCCCTTCCACAAATTAATTTTATCTATTCCAATTATTTATAGTTCGTCTGTTATTTTCTTGTTTTTCCCCCTTCGTATCTGCAATGAATATGTTCCGTTTTTTGTTTCAATAATGTTGATAATTTGTAAATTCTCTCTACCGCGTGAAATCGCCGCTGGATCCAAAAGCTTAGCTGAGCCAAGTAATCTAGCAGTTCATAGATTTCAATTGTATAGAATATTGAAATTTCCGTGCCGTAGCCTCCAGTTTTCAATTTCGGATAACTTGTAGGAGAGGAAGAAAATTTTCTGCATTAAAAACGCGTAAGAGAGTTATTATCATATCATGATCTTATCTGTTGCTGTTTTCATTCCTCGATTCTGACATAGAATTTCTATGCATTGAATCCACATCCTGGCTTTCATCTCTTCATTCTTTTTGGCACATTATTCAGCGATAACTTTAAGTAATTTGTGACTGATAAGGGCATGACGATGGTGAATCATTTTTATTTGAAGTTCAAACTCCATAGGATTTTGTTGTTTGTGTTCCCCCACGACCACCGATTTAAGCTTTGAGTATGCATTTGAATGCCTTGTGAATCTAGAACCATTTTAACATTGTTCTAAACAACAGCCAACCGGTACAGATTATTAGAAAGAAATTTTAACATCAGAGGTGGATCATACGAGCTGGGGAACACTTTCGATGGTGATAGGTACGATGACCATTCTGATTCTGAGTTATAGATGGATGAATGAGAGGGTGTGTTCATAATATTCTTAGAGCTTTTTGTCAAAATTCTTTTTGGGTTCCCAGATGA

mRNA sequence

ATGGCCAGTGAGATGTTCGATTTGATTATTGATTTTTGTTCAACTTTTGCGCAGGAGATTGTAGATTTGAATTCGTTATCGGAGTTTTTGAACGCGTTTGAGCGTTTCAGAACAAAAGCTGAAAGTTATATCTTATCGAGTTTCGTGAAGATTAGAATAACGGCGGAAGATTCTTTCCATGTGGTCCGATTATTAGAAAGAAATTTTAACATCAGAGGTGGATCATACGAGCTGGGGAACACTTTCGATGGTGATAGATGA

Coding sequence (CDS)

ATGGCCAGTGAGATGTTCGATTTGATTATTGATTTTTGTTCAACTTTTGCGCAGGAGATTGTAGATTTGAATTCGTTATCGGAGTTTTTGAACGCGTTTGAGCGTTTCAGAACAAAAGCTGAAAGTTATATCTTATCGAGTTTCGTGAAGATTAGAATAACGGCGGAAGATTCTTTCCATGTGGTCCGATTATTAGAAAGAAATTTTAACATCAGAGGTGGATCATACGAGCTGGGGAACACTTTCGATGGTGATAGATGA

Protein sequence

MASEMFDLIIDFCSTFAQEIVDLNSLSEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERNFNIRGGSYELGNTFDGDR

Homology

[Close]

BLAST of CmoCh15G005870.1 vs. NCBI nr
Match: KAG6578873.1 (hypothetical protein SDJN03_23321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 9   IIDFCSTFAQEIVDLNSLSEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERN 68
           ++  CS   QEIVDLNS SEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERN
Sbjct: 40  VVRICS---QEIVDLNS-SEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERN 99

Query: 69  FNIRGGSYELGNTFDGDR 87
           FNIRGGSYELGNTFDGDR
Sbjct: 100 FNIRGGSYELGNTFDGDR 113

[Close]

BLAST of CmoCh15G005870.1 vs. NCBI nr
Match: KAG6602195.1 (hypothetical protein SDJN03_07428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-04
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 9  IIDFCSTFAQEIVDLNSLSEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVR 64
          ++  CS   QEIVD +SLSEFL+       KAESYI S FVKIRITA DS HVVR
Sbjct: 43 LVRICS---QEIVDFSSLSEFLDRL-GVSEKAESYISSGFVKIRITAGDSSHVVR 93

The following BLAST results are available for this feature:

BLAST of CmoCh15G005870.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G005870.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G005870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578873.1	3.9e-27	89.74	hypothetical protein SDJN03_23321, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6602195.1	7.9e-04	61.82	hypothetical protein SDJN03_07428, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh15G005870.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh15G005870	CmoCh15G005870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G005870.1:exon:3045	CmoCh15G005870.1:exon:3045	exon
CmoCh15G005870.1:exon:3046	CmoCh15G005870.1:exon:3046	exon
CmoCh15G005870.1:exon:3047	CmoCh15G005870.1:exon:3047	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G005870.1:cds	CmoCh15G005870.1:cds	CDS
CmoCh15G005870.1:cds	CmoCh15G005870.1:cds_2	CDS
CmoCh15G005870.1:cds	CmoCh15G005870.1:cds_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh15G005870.1	CmoCh15G005870.1-protein	polypeptide