CmoCh15G005870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G005870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 2836289 .. 2837293 (+)
RNA-Seq ExpressionCmoCh15G005870
SyntenyCmoCh15G005870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGTGAGATGTTCGATTTGATTATTGATTTTTGTTCAACTTTTGCGCAGGAGATTGTAGATTTGAATTCGTTATCGGAGTTTTTGAACGCGTTTGAGCGTTTCAGAACAAAAGCTGAAAGTTATATCTTATCGAGTTTCGTGAAGATTAGAATAACGGCGGAAGATTCTTTCCATGTGGTCCGGTAGCTCTTTATTTCCCCTTCCACAAATTAATTTTATCTATTCCAATTATTTATAGTTCGTCTGTTATTTTCTTGTTTTTCCCCCTTCGTATCTGCAATGAATATGTTCCGTTTTTTGTTTCAATAATGTTGATAATTTGTAAATTCTCTCTACCGCGTGAAATCGCCGCTGGATCCAAAAGCTTAGCTGAGCCAAGTAATCTAGCAGTTCATAGATTTCAATTGTATAGAATATTGAAATTTCCGTGCCGTAGCCTCCAGTTTTCAATTTCGGATAACTTGTAGGAGAGGAAGAAAATTTTCTGCATTAAAAACGCGTAAGAGAGTTATTATCATATCATGATCTTATCTGTTGCTGTTTTCATTCCTCGATTCTGACATAGAATTTCTATGCATTGAATCCACATCCTGGCTTTCATCTCTTCATTCTTTTTGGCACATTATTCAGCGATAACTTTAAGTAATTTGTGACTGATAAGGGCATGACGATGGTGAATCATTTTTATTTGAAGTTCAAACTCCATAGGATTTTGTTGTTTGTGTTCCCCCACGACCACCGATTTAAGCTTTGAGTATGCATTTGAATGCCTTGTGAATCTAGAACCATTTTAACATTGTTCTAAACAACAGCCAACCGGTACAGATTATTAGAAAGAAATTTTAACATCAGAGGTGGATCATACGAGCTGGGGAACACTTTCGATGGTGATAGGTACGATGACCATTCTGATTCTGAGTTATAGATGGATGAATGAGAGGGTGTGTTCATAATATTCTTAGAGCTTTTTGTCAAAATTCTTTTTGGGTTCCCAGATGA

mRNA sequence

ATGGCCAGTGAGATGTTCGATTTGATTATTGATTTTTGTTCAACTTTTGCGCAGGAGATTGTAGATTTGAATTCGTTATCGGAGTTTTTGAACGCGTTTGAGCGTTTCAGAACAAAAGCTGAAAGTTATATCTTATCGAGTTTCGTGAAGATTAGAATAACGGCGGAAGATTCTTTCCATGTGGTCCGATTATTAGAAAGAAATTTTAACATCAGAGGTGGATCATACGAGCTGGGGAACACTTTCGATGGTGATAGATGA

Coding sequence (CDS)

ATGGCCAGTGAGATGTTCGATTTGATTATTGATTTTTGTTCAACTTTTGCGCAGGAGATTGTAGATTTGAATTCGTTATCGGAGTTTTTGAACGCGTTTGAGCGTTTCAGAACAAAAGCTGAAAGTTATATCTTATCGAGTTTCGTGAAGATTAGAATAACGGCGGAAGATTCTTTCCATGTGGTCCGATTATTAGAAAGAAATTTTAACATCAGAGGTGGATCATACGAGCTGGGGAACACTTTCGATGGTGATAGATGA

Protein sequence

MASEMFDLIIDFCSTFAQEIVDLNSLSEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERNFNIRGGSYELGNTFDGDR
Homology
[Close]
BLAST of CmoCh15G005870 vs. NCBI nr
Match: KAG6578873.1 (hypothetical protein SDJN03_23321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 9   IIDFCSTFAQEIVDLNSLSEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERN 68
           ++  CS   QEIVDLNS SEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERN
Sbjct: 40  VVRICS---QEIVDLNS-SEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVRLLERN 99

Query: 69  FNIRGGSYELGNTFDGDR 87
           FNIRGGSYELGNTFDGDR
Sbjct: 100 FNIRGGSYELGNTFDGDR 113

[Close]
BLAST of CmoCh15G005870 vs. NCBI nr
Match: KAG6602195.1 (hypothetical protein SDJN03_07428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-04
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 9  IIDFCSTFAQEIVDLNSLSEFLNAFERFRTKAESYILSSFVKIRITAEDSFHVVR 64
          ++  CS   QEIVD +SLSEFL+       KAESYI S FVKIRITA DS HVVR
Sbjct: 43 LVRICS---QEIVDFSSLSEFLDRL-GVSEKAESYISSGFVKIRITAGDSSHVVR 93

The following BLAST results are available for this feature:
BLAST of CmoCh15G005870 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G005870 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G005870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578873.13.9e-2789.74hypothetical protein SDJN03_23321, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602195.17.9e-0461.82hypothetical protein SDJN03_07428, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh15G005870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G005870.1CmoCh15G005870.1mRNA