CmoCh15G002980.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATCATTCGATTACGAGGATTCAGAGTAAGTCTATTGCCTTCTCTATTTCCATTTATAAACCTTAGCTATCGAATCTCCTTTAGTCTTTTTCTGCATGTTCATGTTCTTAATGAAAGATGGTTAATTTTTTTCATATTGTTTTCTTATTCAACATTGAATCATGGTCAATGTCTCTAGCTAATATGCATTCTCAGTTCTGTGGAAAACCTGATGTATATGTAGATTGTGAACAATTATGATTATTAGTATTATAGGCCCTTCTTAGATGCTGTGCTGATATGATGAGTTTTTCAAGGATAGGTAATATGATTACATCATGATGTATTGATGATGGGTGCGATTACCAGGTATCAACAAGCAGATTTGGTGAAACTAGATAGCCTATTGAATGGGCAGCCAGTTTTCATAATTTGAAGGCGCAAAGGGTCGGACGCGAATTGGTGGAAAAACTGAAGAAGTTCATTGACAGGTATGTGTTTAATTTATTTTCCTTCTCCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGACATGAGCTNTTTTTATGCTGAACAGGCAAATGTTTGAGATTACAATACAAGCTGCGATTGGATCTAAGATTATTGCAAGAGAAACGTAATGTTCTTATTTTATTTACTTATTTTCTCTAGAAGGTTTTTACTCAGATTTTTATTACATATTCAATATTTGAGTGGCCCAAAACCTTGTAGCCGAACTCTTTCGCCCTGAGACGGAATTATAGTTACTCATTGATTGCCTTCAATTTTCATTGTTAGACTGAATTATTTATGTTGATTTTAGGATCTCGGCCACGAGGAAAAATGTTCTTGCAAAGTGTTATGGTGGAGATGTTACTCGGAAGAGGAAGCTGTTGGAGAAACAAAAGGAAGGGAAAAAATGTATGAAACATGTTGGATCTGTTGATATTCCTCAGGAAGCAATTCATGAAATTCTGAAGGTTTCATAGGTTGAAAAAATCAGAGTAAATTTATGAACCATACTTATTACAGGTACGGTTCTTTTTTATCCATATGAATCACATTTGGATTTCATTTCCACTTTGTTGTTAATGATAATCATGACATAAGTTTACAATTTTCAAATGGAAGTTTATTAAATAATATTTCAGTAAGTGAGGAGTATACTACATGTAGTTTTAGGGACCTCCAATTCTGCTGTCACAGTTTTGCCTAATCATATTGGTTTGCAACTCCGAATGATCTGTCCTGGCAACTCATACTCAATCATCTCGTCATATCCCAAGATGCCAAGGTCAGGAGATTGTTAGTAGAATAGATTAGTCTAAGTTAGAGACATCTTTTTGGGTGGTGCAGTTAATCATTATTTATTTGGCATTTCCCTTGTATGTATTGCATGCGTAGCTGATTGATACAATATCAGATAAATTGAGATATCTTGATTTTAATGTGAGCCGTGTGACATTTACTGATTAGTTGCCATTATTAAACCTTTGATTTTGTGTATGTATTTGTGTGTTAGCTTTTGCTCGTGAGTTGTTATAGGCTTTGCTTCTGTAGAGGGTCGTGAAAGCTTGAAGGGTGTTTCTTTTTCTTCAACCTTTTTTAATACTTGTTTGGGAAGGGTCTGATCAGTCGCCAGTCAATGTAGGAGCCTTATTTAATTCTCTCCCTATTCCTACTACCAAAGTAATTACTCAATATCATTAATATAGCTTTCTTTCATCATTCCTCCCATGTGAATAATCATTTAGTATGATTAACATAATTTTAACTCAAGCTTCGATATCATGAGTTTATATAAGAGAGATTCAAAAATATTTCGTAGATTTGTATCTAATGATGACTAAAATGATAACTACTTCGAAACATCATTTATTACAGCAAGAGTTTTCTCAATTGGCCAGATACCCAGAAGATATATTCCACCGGTCTTGATCGATGATAGATAAATGTGGGATCTTCAACATGCTCCCTCAAGATCGTGTAAGCCTCTTTCTTCTTTTTGATGTACGATAATCA ATGCATCATTCGATTACGAGGATTCAGAGTATCAACAAGCAGATTTGGCAAATGTTTGAGATTACAATACAAGCTGCGATTGGATCTAAGATTATTGCAAGAGAAACGATCTCGGCCACGAGGAAAAATGTTCTTGCAAAGTGTTATGGTGGAGATGTTACTCGGAAGAGGAAGCTGTTGGAGAAACAAAAGGAAGGGAAAAAATGTATGAAACATGTTGGATCTGTTGATATTCCTCAGGAAGCAATTCATGAAATTCTGAAGGTTTCATAGGTTGAAAAAATCAGAGTAAATTTATGAACCATACTTATTACAGCAAGAGTTTTCTCAATTGGCCAGATACCCAGAAGATATATTCCACCGGTCTTGATCGATGATAGATAAATGTGGGATCTTCAACATGCTCCCTCAAGATCGTGTAAGCCTCTTTCTTCTTTTTGATGTACGATAATCA ATGCATCATTCGATTACGAGGATTCAGAGTATCAACAAGCAGATTTGGCAAATGTTTGAGATTACAATACAAGCTGCGATTGGATCTAAGATTATTGCAAGAGAAACGATCTCGGCCACGAGGAAAAATGTTCTTGCAAAGTGTTATGGTGGAGATGTTACTCGGAAGAGGAAGCTGTTGGAGAAACAAAAGGAAGGGAAAAAATGTATGAAACATGTTGGATCTGTTGATATTCCTCAGGAAGCAATTCATGAAATTCTGAAGGTTTCATAG MHHSITRIQSINKQIWQMFEITIQAAIGSKIIARETISATRKNVLAKCYGGDVTRKRKLLEKQKEGKKCMKHVGSVDIPQEAIHEILKVS Homology
BLAST of CmoCh15G002980.1 vs. ExPASy Swiss-Prot
Match: B9RUN8 (Translation factor GUF1 homolog, mitochondrial OS=Ricinus communis OX=3988 GN=RCOM_0855130 PE=3 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 4.1e-30 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy Swiss-Prot
Match: C5Z3W1 (Translation factor GUF1 homolog, mitochondrial OS=Sorghum bicolor OX=4558 GN=Sb10g003070 PE=3 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.6e-29 Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy Swiss-Prot
Match: B8B2R1 (Translation factor GUF1 homolog, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=OsI_21607 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 2.0e-29 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy Swiss-Prot
Match: Q5VQ69 (Translation factor GUF1 homolog, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0144800 PE=3 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 2.0e-29 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy Swiss-Prot
Match: Q9FLE4 (Translation factor GUF1 homolog, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g39900 PE=2 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 4.2e-27 Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1JL24 (Translation factor GUF1 homolog, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111487856 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1HK65 (Translation factor GUF1 homolog, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111464855 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1JU42 (Translation factor GUF1 homolog, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111487856 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy TrEMBL
Match: A0A6J1HM47 (Translation factor GUF1 homolog, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111464855 PE=3 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 5.2e-28 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. ExPASy TrEMBL
Match: A0A1U7YWP0 (Translation factor GUF1 homolog, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC104586753 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27 Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. NCBI nr
Match: KAG7016148.1 (Translation factor GUF1-like, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 143.3 bits (360), Expect = 1.0e-30 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. NCBI nr
Match: XP_023553579.1 (translation factor GUF1 homolog, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553580.1 translation factor GUF1 homolog, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. NCBI nr
Match: XP_023553581.1 (translation factor GUF1 homolog, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. NCBI nr
Match: XP_022991182.1 (translation factor GUF1 homolog, mitochondrial isoform X1 [Cucurbita maxima] >XP_022991183.1 translation factor GUF1 homolog, mitochondrial isoform X1 [Cucurbita maxima]) HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. NCBI nr
Match: XP_022964900.1 (translation factor GUF1 homolog, mitochondrial isoform X2 [Cucurbita moschata] >KAG7033160.1 Translation factor GUF1-like, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27 Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. TAIR 10
Match: AT5G39900.1 (Small GTP-binding protein ) HSP 1 Score: 121.7 bits (304), Expect = 3.0e-28 Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0
BLAST of CmoCh15G002980.1 vs. TAIR 10
Match: AT5G08650.1 (Small GTP-binding protein ) HSP 1 Score: 98.2 bits (243), Expect = 3.6e-21 Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|