CmoCh13G004130.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004130.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr13: 5178139 .. 5179154 (-)
Sequence length	288
RNA-Seq Expression	CmoCh13G004130.1
Synteny	CmoCh13G004130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTGAAGTTAAATGTGGTCTAGACCATAAAGAATTACCAAGCAAGTTTAAGGCGACTAGACACAATATCAAAGAACCACTAAAGATGCAAAACCCAGGAGCAAGGCACAAGGTGGACGGTCATTCGTGAGAATGATGGCGTGGATGACACCGTGTCGACAAATACGTACCCAATCAAAGTCAGTATGTATTAGCCTAATTTGAACTTAGAATTTGCACCTCCCTAAAAGTGTGAGGACATTGAGAGGATAAGTACGACCATAGCTAGAACTTGCCTAGAGCTTTAGATGACCAAGTAGCCACTTAAGTCGCGAGTGAGGCATGAGCTAAAATAGAAAGCTAAGATTATAAAGTTACCGTGTGAGATCCCACATCGGATGGAGAGGGAAAAGAAACATTCATGGTGTGGAAACCTCTCCGAAGTAGATGCATTTTAAAATCGTGAGGCTAACGGTGATTCATAACGAGCCAAAGTGGACAATATCTATTAGTGGTGGGCTTGGACTATTACAATACAATATTAGAGCTAGACACGGGGTGGTGTGCCAACAAGGACGCTAGACTCGAGACACGGAGTGGTGCGCCAACAAGGACGCTAGACCCGAGGGAGGTAGATTGTGAGATCTCATGTCGGTTGGAGAGGGGAATAAAACATTACTAGTGTGAAAATCTCTCCCTAATAAACACCGTTAAAAACCGTGAGATTAACGACCCTACCTAAGTCATAATTACTAGGTATGGTGCAAATAAAATAAAATAAAAAAAAGACGACTTCCGCTGATTCTGGAGGTTTTGGCTGCCATTCTACTACCCGACACGACATAGCTCCTCTTGTGTTCACCTCTAGGTTCCATCACCACCGTTCTGTTTCAGCCCAATTCTCTCTTTTGTTCCCTTTTGTCATTTCTCCTCATCGCCGGGACTGTTCCCGGCACGTACCCTTCAACCTCTTCCCTTCAGAGAATACCCTCATCGGTGCGCCGCCACCACCACCAATCCGCCGTCGTTTGA

mRNA sequence

ATGCCTATTGAAGTTAAATGTGGTCTAGACCATAAAGAATTACCAAGCAAGTTTAAGGCGACTAGACACAATATCAAAGAACCACTAAAGATGCAAAACCCAGGAGCAAGGCACAAGGTGGACGGTTCCATCACCACCGTTCTGTTTCAGCCCAATTCTCTCTTTTGTTCCCTTTTGTCATTTCTCCTCATCGCCGGGACTGTTCCCGGCACGTACCCTTCAACCTCTTCCCTTCAGAGAATACCCTCATCGGTGCGCCGCCACCACCACCAATCCGCCGTCGTTTGA

Coding sequence (CDS)

ATGCCTATTGAAGTTAAATGTGGTCTAGACCATAAAGAATTACCAAGCAAGTTTAAGGCGACTAGACACAATATCAAAGAACCACTAAAGATGCAAAACCCAGGAGCAAGGCACAAGGTGGACGGTTCCATCACCACCGTTCTGTTTCAGCCCAATTCTCTCTTTTGTTCCCTTTTGTCATTTCTCCTCATCGCCGGGACTGTTCCCGGCACGTACCCTTCAACCTCTTCCCTTCAGAGAATACCCTCATCGGTGCGCCGCCACCACCACCAATCCGCCGTCGTTTGA

Protein sequence

MPIEVKCGLDHKELPSKFKATRHNIKEPLKMQNPGARHKVDGSITTVLFQPNSLFCSLLSFLLIAGTVPGTYPSTSSLQRIPSSVRRHHHQSAVV

Homology

[Close]

BLAST of CmoCh13G004130.1 vs. NCBI nr
Match: KAG6583743.1 (Protein NAR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 49  FQPNSLFCSLLSFLLIAGTVPGTYPSTSSLQRIPSS 85
           + P   F   LSFLLIAGTVPGTYPSTSSLQRIPSS
Sbjct: 410 YTPILSFVPFLSFLLIAGTVPGTYPSTSSLQRIPSS 445

The following BLAST results are available for this feature:

BLAST of CmoCh13G004130.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004130.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583743.1	5.1e-04	77.78	Protein NAR1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh13G004130.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G004130	CmoCh13G004130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004130.1:exon:8695	CmoCh13G004130.1:exon:8695	exon
CmoCh13G004130.1:exon:8696	CmoCh13G004130.1:exon:8696	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004130.1:cds	CmoCh13G004130.1:cds_2	CDS
CmoCh13G004130.1:cds	CmoCh13G004130.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G004130.1	CmoCh13G004130.1-protein	polypeptide