CmoCh13G004130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr13: 5178139 .. 5179154 (-)
RNA-Seq Expression	CmoCh13G004130
Synteny	CmoCh13G004130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATTGAAGTTAAATGTGGTCTAGACCATAAAGAATTACCAAGCAAGTTTAAGGCGACTAGACACAATATCAAAGAACCACTAAAGATGCAAAACCCAGGAGCAAGGCACAAGGTGGACGGTCATTCGTGAGAATGATGGCGTGGATGACACCGTGTCGACAAATACGTACCCAATCAAAGTCAGTATGTATTAGCCTAATTTGAACTTAGAATTTGCACCTCCCTAAAAGTGTGAGGACATTGAGAGGATAAGTACGACCATAGCTAGAACTTGCCTAGAGCTTTAGATGACCAAGTAGCCACTTAAGTCGCGAGTGAGGCATGAGCTAAAATAGAAAGCTAAGATTATAAAGTTACCGTGTGAGATCCCACATCGGATGGAGAGGGAAAAGAAACATTCATGGTGTGGAAACCTCTCCGAAGTAGATGCATTTTAAAATCGTGAGGCTAACGGTGATTCATAACGAGCCAAAGTGGACAATATCTATTAGTGGTGGGCTTGGACTATTACAATACAATATTAGAGCTAGACACGGGGTGGTGTGCCAACAAGGACGCTAGACTCGAGACACGGAGTGGTGCGCCAACAAGGACGCTAGACCCGAGGGAGGTAGATTGTGAGATCTCATGTCGGTTGGAGAGGGGAATAAAACATTACTAGTGTGAAAATCTCTCCCTAATAAACACCGTTAAAAACCGTGAGATTAACGACCCTACCTAAGTCATAATTACTAGGTATGGTGCAAATAAAATAAAATAAAAAAAAGACGACTTCCGCTGATTCTGGAGGTTTTGGCTGCCATTCTACTACCCGACACGACATAGCTCCTCTTGTGTTCACCTCTAGGTTCCATCACCACCGTTCTGTTTCAGCCCAATTCTCTCTTTTGTTCCCTTTTGTCATTTCTCCTCATCGCCGGGACTGTTCCCGGCACGTACCCTTCAACCTCTTCCCTTCAGAGAATACCCTCATCGGTGCGCCGCCACCACCACCAATCCGCCGTCGTTTGA

mRNA sequence

ATGCCTATTGAAGTTAAATGTGGTCTAGACCATAAAGAATTACCAAGCAAGTTTAAGGCGACTAGACACAATATCAAAGAACCACTAAAGATGCAAAACCCAGGAGCAAGGCACAAGGTGGACGGTTCCATCACCACCGTTCTGTTTCAGCCCAATTCTCTCTTTTGTTCCCTTTTGTCATTTCTCCTCATCGCCGGGACTGTTCCCGGCACGTACCCTTCAACCTCTTCCCTTCAGAGAATACCCTCATCGGTGCGCCGCCACCACCACCAATCCGCCGTCGTTTGA

Coding sequence (CDS)

ATGCCTATTGAAGTTAAATGTGGTCTAGACCATAAAGAATTACCAAGCAAGTTTAAGGCGACTAGACACAATATCAAAGAACCACTAAAGATGCAAAACCCAGGAGCAAGGCACAAGGTGGACGGTTCCATCACCACCGTTCTGTTTCAGCCCAATTCTCTCTTTTGTTCCCTTTTGTCATTTCTCCTCATCGCCGGGACTGTTCCCGGCACGTACCCTTCAACCTCTTCCCTTCAGAGAATACCCTCATCGGTGCGCCGCCACCACCACCAATCCGCCGTCGTTTGA

Protein sequence

MPIEVKCGLDHKELPSKFKATRHNIKEPLKMQNPGARHKVDGSITTVLFQPNSLFCSLLSFLLIAGTVPGTYPSTSSLQRIPSSVRRHHHQSAVV

Homology

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BLAST of CmoCh13G004130 vs. NCBI nr
Match: KAG6583743.1 (Protein NAR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-04
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 49  FQPNSLFCSLLSFLLIAGTVPGTYPSTSSLQRIPSS 85
           + P   F   LSFLLIAGTVPGTYPSTSSLQRIPSS
Sbjct: 410 YTPILSFVPFLSFLLIAGTVPGTYPSTSSLQRIPSS 445

The following BLAST results are available for this feature:

BLAST of CmoCh13G004130 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004130 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583743.1	5.1e-04	77.78	Protein NAR1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh13G004130 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004130.1	CmoCh13G004130.1	mRNA