CmoCh12G013240.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013240.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L31-like
Location	Cmo_Chr12: 11558070 .. 11559282 (+)
Sequence length	709
RNA-Seq Expression	CmoCh12G013240.1
Synteny	CmoCh12G013240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATGGACCAAACCTCTATATAAATTTCAGATTAGGGTTTTTTTGTGCTCTCGAAGATCATCTCTTTTGTTGGAGTCCACTTTTCGCGCCGATCGCCAGGTCTTACTCTAAACCCTGAAGATGTCTCCTCGGTTGCTTAATCCTTTGTTTCCGCTTGTCTTCAACTTTGGACGTTTGAAATCGGCAACAGTTATCCTTTTCATTTCATTTTTGGTGGAGTTCTGATTACAAGTTTATCGTGTACAGGTGTTTTAGTTGTGATTTAAAATGGTGGAGAAGACCAAAGGCAGAAAGGAGGAGGTTGTTACCAGAGAGTACACCATTAACCTTCACAAGCGCCTTCATGGCTGGTACGTTCATTATAGCTGCCCTTCTAAGTTCTAAGAATTCATCTAGATTTTATTGGATTGGTATTAGTTCAGTGTTTATTTCCGACTATCGATTGCAATGTGAGGTTTGAGATTTAGGTACTGGCTGAGGAAAGGATAACTTATATGTTACAACCATTGTCTTATTAGTTTCTTCTTGAATTCGTTCCCATGATGTGCATTTCTCTGACTGCCTCATTGCTATATTTAGAGACAGAGAGCATAGTTGGGATTGGTTTTGATACCATTATTGTTTGTTCATGTTAGAGAACTAACATGAATTTCCATTTAATTTGTTTGTTACTTATCAGCCCTTGCTTGCTGCTTGTGAATGAACAGCACCTTTAAGAAGAAGGCCCCAAAGGCCATCAAGGAGATCAGGAGATTTGCTGAGAAGGCTATGGGAACAAAGGACGTGAGAGTGGATGTGAAGTTGAACAAGCATATCTGGAGCAGGGGAATCAGGAGTGTGCCTAGAAGAATCAGAGTTCGCATTGCTCGGAAGAGGAACGATGATGAAGATGCCAAGGAGGAGTTGTACTCCCTCGTTACCGTTGCAGAAATCTCTGCTGACGGACTTAAGGGACTCGGGACTAAAGTCATTGAGGAAGATGATTGAATTGTCTTTGTTTTTGTTTTCAAGATGAGGTCAGGTTGTAGTTTTGATCTGTTTAATGGAAGGAGACGATCATATTTAATTGCAGTTGTTGGAGATTTTTTCTTATACCTATTAACTTACCTTACCGTTCCTGGTCTTATAAACTATTGAATTTAAATGTTTTGGGTTACTACACTGAGCTTTCTAGTTATTGAAACATCAGGATTATTAGTGGAAGAGCTTATT

mRNA sequence

TCCATGGACCAAACCTCTATATAAATTTCAGATTAGGGTTTTTTTGTGCTCTCGAAGATCATCTCTTTTGTTGGAGTCCACTTTTCGCGCCGATCGCCAGGTGTTTTAGTTGTGATTTAAAATGGTGGAGAAGACCAAAGGCAGAAAGGAGGAGGTTGTTACCAGAGAGTACACCATTAACCTTCACAAGCGCCTTCATGGCTGCACCTTTAAGAAGAAGGCCCCAAAGGCCATCAAGGAGATCAGGAGATTTGCTGAGAAGGCTATGGGAACAAAGGACGTGAGAGTGGATGTGAAGTTGAACAAGCATATCTGGAGCAGGGGAATCAGGAGTGTGCCTAGAAGAATCAGAGTTCGCATTGCTCGGAAGAGGAACGATGATGAAGATGCCAAGGAGGAGTTGTACTCCCTCGTTACCGTTGCAGAAATCTCTGCTGACGGACTTAAGGGACTCGGGACTAAAGTCATTGAGGAAGATGATTGAATTGTCTTTGTTTTTGTTTTCAAGATGAGGTCAGGTTGTAGTTTTGATCTGTTTAATGGAAGGAGACGATCATATTTAATTGCAGTTGTTGGAGATTTTTTCTTATACCTATTAACTTACCTTACCGTTCCTGGTCTTATAAACTATTGAATTTAAATGTTTTGGGTTACTACACTGAGCTTTCTAGTTATTGAAACATCAGGATTATTAGTGGAAGAGCTTATT

Coding sequence (CDS)

ATGGTGGAGAAGACCAAAGGCAGAAAGGAGGAGGTTGTTACCAGAGAGTACACCATTAACCTTCACAAGCGCCTTCATGGCTGCACCTTTAAGAAGAAGGCCCCAAAGGCCATCAAGGAGATCAGGAGATTTGCTGAGAAGGCTATGGGAACAAAGGACGTGAGAGTGGATGTGAAGTTGAACAAGCATATCTGGAGCAGGGGAATCAGGAGTGTGCCTAGAAGAATCAGAGTTCGCATTGCTCGGAAGAGGAACGATGATGAAGATGCCAAGGAGGAGTTGTACTCCCTCGTTACCGTTGCAGAAATCTCTGCTGACGGACTTAAGGGACTCGGGACTAAAGTCATTGAGGAAGATGATTGA

Protein sequence

MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD

Homology

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAP AIKEIR+FA+KAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVA+I A  LKGLG ++IEEDD
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.4e-54
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           M +KTKGRKEEVVTREYTINLHKRLH CTFKKKAP AIKEIR+FA+KAMGTKDVRVDVKL
Sbjct: 1   MSDKTKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVAEI A GLKGLGTK+IE++D
Sbjct: 61  NKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.6e-52
Identity = 103/116 (88.79%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 5   TKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLNKHI 64
           +K RKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIR+FA+KAMGT DVRVDVKLNKHI
Sbjct: 6   SKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHI 65

Query: 65  WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
           WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI   GLKGLGT+VI+E++
Sbjct: 66  WSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 7.3e-51
Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLN 61
           + + KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIR+FAEKAMGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEI A+GL GLGTKVIEE+D
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy Swiss-Prot
Match: Q9STR1 (60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-50
Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLN 61
           + + KGRKEEVVTREYTINLH+RLH CTFKKKAPKAIKEIR+FAEK MGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEI A+GL GLGTK+IEE+D
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy TrEMBL
Match: A0A6J1FHW6 (60S ribosomal protein L31-like OS=Cucurbita moschata OX=3662 GN=LOC111444290 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy TrEMBL
Match: A0A6J1HN79 (60S ribosomal protein L31-like OS=Cucurbita maxima OX=3661 GN=LOC111465729 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI ADGLKGLGTKV+EEDD
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPADGLKGLGTKVLEEDD 120

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy TrEMBL
Match: A0A6J1DKK4 (60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111021941 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.6e-56
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIR+FAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTV+EI A+GLKGLGTKVIEEDD
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVSEIPAEGLKGLGTKVIEEDD 120

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy TrEMBL
Match: A0A5D3CKL3 (60S ribosomal protein L31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00820 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIR+FAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI A+GLKGLGTKVIEEDD
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIEEDD 120

[Close]

BLAST of CmoCh12G013240.1 vs. ExPASy TrEMBL
Match: A0A6J1KK05 (60S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111493875 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 116/120 (96.67%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKL 60
           MVEKTKGRKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIR+FAEKAMGTKDVRVDVKL
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKL 60

Query: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 120
           NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI A+GLKGLGTKVIEEDD
Sbjct: 61  NKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIEEDD 120

[Close]

BLAST of CmoCh12G013240.1 vs. TAIR 10
Match: AT5G56710.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-52
Identity = 100/119 (84.03%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLN 61
           + + KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIR+FAEKAMGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEI A+GL GLGTKVIEE+D
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of CmoCh12G013240.1 vs. TAIR 10
Match: AT4G26230.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-51
Identity = 99/119 (83.19%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLN 61
           + + KGRKEEVVTREYTINLH+RLH CTFKKKAPKAIKEIR+FAEK MGTKDVRVDVKLN
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEI A+GL GLGTK+IEE+D
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

[Close]

BLAST of CmoCh12G013240.1 vs. TAIR 10
Match: AT2G19740.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-51
Identity = 100/119 (84.03%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLN 61
           +EK KGRKEEVVTREYTINLH+RLH CTFKKKAP AIKEIR+FA KAMGTKDVRVDVKLN
Sbjct: 1   MEKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLN 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
           K IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEI A+GL GLGTKVIEE++
Sbjct: 61  KQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119

[Close]

BLAST of CmoCh12G013240.1 vs. TAIR 10
Match: AT5G56710.2 (Ribosomal protein L31e family protein )

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-29
Identity = 71/119 (59.66%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 2   VEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLN 61
           + + KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIR+FAEKAMGTKDVRVD    
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD---- 60

Query: 62  KHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEISADGLKGLGTKVIEEDD 121
                                         EE +SLVTVAEI A+GL GLGTKVIEE+D
Sbjct: 61  ------------------------------EEFFSLVTVAEIPAEGLSGLGTKVIEEED 85

The following BLAST results are available for this feature:

BLAST of CmoCh12G013240.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAV7	1.9e-54	90.00	60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1	[more]
P46290	2.4e-54	89.17	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
Q9M573	8.6e-52	88.79	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
P51420	7.3e-51	84.03	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]
Q9STR1	1.6e-50	83.19	60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1	[more]

BLAST of CmoCh12G013240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHW6	2.9e-58	100.00	60S ribosomal protein L31-like OS=Cucurbita moschata OX=3662 GN=LOC111444290 PE=...	[more]
A0A6J1HN79	1.9e-57	98.33	60S ribosomal protein L31-like OS=Cucurbita maxima OX=3661 GN=LOC111465729 PE=3 ...	[more]
A0A6J1DKK4	1.6e-56	96.67	60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111021941 PE=3 SV...	[more]
A0A5D3CKL3	2.1e-56	96.67	60S ribosomal protein L31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1KK05	2.1e-56	96.67	60S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111493875 PE=3 SV=1	[more]

BLAST of CmoCh12G013240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56710.1	5.2e-52	84.03	Ribosomal protein L31e family protein	[more]
AT4G26230.1	1.2e-51	83.19	Ribosomal protein L31e family protein	[more]
AT2G19740.1	2.6e-51	84.03	Ribosomal protein L31e family protein	[more]
AT5G56710.2	1.6e-29	59.66	Ribosomal protein L31e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 10..93 e-value: 1.0E-49 score: 181.1
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 11..92 e-value: 9.9E-43 score: 144.2
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 1..120
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 9..92 e-value: 1.05446E-32 score: 108.04
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 9..120 e-value: 3.1E-49 score: 167.5
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 11..92
None	No IPR available	PANTHER	PTHR10956:SF33	60S RIBOSOMAL PROTEIN L31-2-RELATED	coord: 1..120
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 54..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh12G013240	CmoCh12G013240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G013240.1:exon:644	CmoCh12G013240.1:exon:644	exon
CmoCh12G013240.1:exon:645	CmoCh12G013240.1:exon:645	exon
CmoCh12G013240.1:exon:646	CmoCh12G013240.1:exon:646	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G013240.1:five_prime_utr	CmoCh12G013240.1:five_prime_utr	five_prime_UTR
CmoCh12G013240.1:five_prime_utr	CmoCh12G013240.1:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G013240.1:cds	CmoCh12G013240.1:cds	CDS
CmoCh12G013240.1:cds	CmoCh12G013240.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G013240.1:three_prime_utr	CmoCh12G013240.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh12G013240.1	CmoCh12G013240.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome