CmoCh12G010620.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G010620.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L18
LocationCmo_Chr12: 9804735 .. 9810564 (-)
Sequence length3281
RNA-Seq ExpressionCmoCh12G010620.1
SyntenyCmoCh12G010620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGATAAATAGGGTTTTCGAAAGCCCTAAAACCATTGTCGTTCACTCCTAGCAGTCGCCGTCGCGGAGCGGAAGGGTTTCTCCACCAAGAGCTTCAATGGTCTGTTTCTTTCTCTACCTCAATTCATTTCTATTGCTCCAATGGTGTAGATCAATGTCTGAGACTTGTTTTCCGTTAATTGCAGGGGATCGATCTCGTAGCAGGAGGCAAGAGTAAGAAGGCCAAGAGGACTGCGCCTAAGTCCGACGATATCTACCTCAAGCTCCTCGTGAAGGTTGGTTTTCTTATTTTATATTTTTGCTAATCATCGCTGGTTACGCTGTAGTGACGAGCATTTGATTTCACCGATTGAAATTCTTAGAGAATTGAAATGAGTTTTTATTTATTTATTTTTTTAAACTAATGAATGAGTATGTTGTGAATGTGAATGTGGAGTGGAATTTTAGACATTGTTATTTTCACGTGATTTTGCTCGTGTTTCAGTTTTTTAAGTCTGGATTTTTTTTAAACTTAAATGTGCTTGAAATCTGATTATTTGATAATAAAGTAGGTGAAGTTTATGTGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTTCGTAGGTCCGGGAATGAACCAGTTTCCACATTTATCTGAGCCTAGGCTCAGAGTTTTTAAACTTTCTGATTCAATTTGAACAACGAAGCAGAATAATTGGCCACTAATAAACCTGGATTTCGAATTTTTAGATACGAAATATTATATCTTCATCGATTGGCCTATATTTTTAACTTTCTTAAAACTATATTTTGATTGAAATGCTGATTGTATTATCAGCCGCAATGATGCAATGTGATAATCCCAGCTCTATGAGACTTTCTAAAGGTCAAGGACTAGACAAGATCCACATATTTACCTGAGCTCAAAATATTATTTTTAAATCTATGGGCCAATATTTTTAACTTTTCTTTAATTATATTTTGATTGAAAATGCTTATTGTATTATCAACCGCAATGATGCAATGTGATAATCCCAGCTCTATGAGACTTTCTAAAGGTCAAGGACTAGACAAGATCCACATATACACCTGAGCTCAAAATATAATTTTTAAATCGATGGGCTAATATTTTTAACTTTTCTTTTATTTTATTTTTATTGAAATGCTGATTTTATTATCAGCCGCAATGATGCAATATGATAATCCCAGCTCTATGAGACTTTCTACAGGTCAAGGATTAGACAAGATCCACATATTTACCTGAGCTTAAAATATTATTTTTAAATCGACGGGCCAATATTTTTATCTTTTCTTTAATTATGTTTTGATTGAAATGTTTATTGTGTTACCGCAATGATGCAATGTGATAATCCCAGCTCTATGAGACTTTCTACAGGTCAAGGACTAGACAAGATCCACATATTTACCTGAGCTCAAAATATTACTTTTAAATCGATGGCCCAATATTTTTAACTTTTCTTTAATTATATTTTGATTGAAATGTTTACTGTGTGTTATCAGCCGCAATGATGCAATGTGTTAATCCCAGCTCTATGAGACTTTCTAAAGGTCAAGGACTAGACAAGATCCACATATTTACCTGAGCTCAAAATATTTTACTCTTTCAGTTTTTTCATTTCGCATCAAACTCAGCAGTAAAATTAAGATGACAATTATGAGCTACCTTCATCATGTATTGATAACGAAGCCCGTTCGCATATCCTTCTGCCATTTCAGTCACTGTCTTCCTTGTCGAAGGATTGAGAGATAGGTTGTTCCCTATGATGTTTTACTTTTTAAACCATGCTAATACTGATCACATGATGATTGATCTTCAACTCTTGTCTCTGAGGGAACTAGCCTACACTCTTGAATTAATTTTTTCTGAAGGACCTTTATTTGTTTGAATATCTAATATTGTATCCATATGAATTTATAATCTTATTCTGTGATAATATTCTTTAACTTTAACCCTTGTATCTTAATGGAGCATGAAATCTGGTTGTTTGATGAGTAAGTAGTTGAAGTTTATGTGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTCCGTAGGTCCGGGAATGAATCTGTTTCCACATTTATCTGAGCTTAGGTTCATTGTTAAACTTTCTTATTCAATTTGAACAACGAAACGGTATAATTGTTCACTAAGAAACCTTGATTTCGAATTTTTTGTCTCCCCTTAAATTTATTTTGATTGAAATGCTGATATTGTTATATCAGCAGCAATGATGAATTATGTTAATCCCAGCTCTATGAGGCATTCTAAATGCCAATGACTGGACAAGATTCACATATTTACCTGAGCTCAAACTATTGTACCCTTGAAGTTTTTCATTTTGTATCAAATTCAGCATTCAAATTAAGATGAAAAGAAGGGCTACTTTCTTGCGTTTCAAGATTGTTTTCAATAATAATTCATTTTTATGGTCACTTTAGGTTTATTTTAAGGTGTTTAATGTTCATTATGCTTATTCGGTTCATTTAAGTGATGGGTTCTTTCAATTTTGTTCACTGAATTCAGCTGTACCGATTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGGTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCCGACTTATCAAGTTCATGAAGGGAAAGGTGTGTGCTTCTATGTATGCATTACCTATTCTTCACCATTTTATCCGCATTGTTCAGTGTCTAACTTCACGTGGTTATAACTTTGTACAGGAAAATAAAATCGCTGTCATTGTCGGAACCGTGACCGACGACATTCGTGTTTATGAAGTCCCAGCTTTGAAGGTTACAGCCTTGAGGTTTACCGAGACTGCAAGGGCAAGGATCGAGAAGGCTGGTGGCGAGTGCTTGACCTTCGACCAACTTGCCCTGCGAGCTCCTCTTGGCCAGAATACGGTATGAAAGCGACTGTGTCCTGGAATTTCATATAGACTTGTCGTCGAGCACCCTATATTAACAATTGTGAGATTCAAACTTAATCTGCTGTAATTTTGCATCCAAAGGTTCTCCTTCGTGGACCGAAGAACTCCCGAGAAGCCGTGAAGCACTTTGGTCCTGCTCCCGGTGTACCTCACAGCCACACGAAACCGTACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCTAGAGGAAAGAGGAACAGCAGGGGTTACAGAGTTTAGTTTCAGTACCATGTTCAGCGCTATTTGTGAGACAGAAAATTCACGTTTTGGTAAACTTGAAGATACATTATCATGTGAGATTCACTCGTTTCTTTGTTCAAGTTTTCGCTATTATAACATCACAATCGTATTCAATGAGAAACATCTTGTATTTTCTTTCCTCCCACTTTTCCATCCTTATTTGCTTCATATTTCAAAACTGTCCATATTGTTCTATGAACAAATTAGCCTTTAGTAAGTTTTTGGTATATCTATATATTTTACATACTATTTTGTATTTAATTGTTTCAATGTCAATATCAGTCGAACACGAGAGGTCGACCACCATGAGTGCCTGCCAAAGTTGAATGCTTTTGAGGACTTTGAGGTCGATCTCCATGGGGAATGAAGCATTCTTCATAAGGATGTGGAAACATCCCTCTAACTGGTACGTTTTAAAAACGGTAGACTTGAGATGTTACAATAGGGTCGTTCACTCTTGGATATTTTATTATAGATATTTTACATGACTCAATTTATGCCAAGTTTTGTCAATTTTTAGGCCTCCTTTGAGGTCGATCTCCATGGAGAATGAAGCATTCTTCTGTGGAAACATCCCTCTAGCTGGTGAGATATTTTATTATATATATTATACATGACTCAATCCGAATCCAGGAATCCCTTAGATATAAATACAAAATGGATCTTGTTCTATCGTTGATTAGGGATTTCTCTATGAATCATTTGGATTGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCGACCCGCGACCCGCAACAAATAACGGAGGATTTATTTGAGTTTTGTCAATTTTTAGGCCTAATTTGAATCCCTTCAACAATGATTCCAGCTTTGAGCTGAAAGCCTCTAATCTCCATTAAACTCATATGAACATCTTCTTCATCATCATCATCATCATCTTCCCCACTCATGAACTCTCCCAATTCAATCTCAAACCAACCGTCATCTCTCTCCTTCAAACCCCTTATGCCATTGTTTTCTTCTTCTTCCTCTGTTCCCATTAGATTCCTCACTCTTTCCCTTCTATTCCCATAAAACAAGCTCTCTAAATCTTCCTCCTTCCTCTGTTTCCGCTGCAGCCATACTCTGCCCTCTGAAATCCGCCCTCCATTCCCCACCGCCACCGAAACTTCCGCCGCCATCAAATCCAACCCATACGCTCTCTCTGTTATCTTCACTAGAAGGTACGCTCCGTACTCTGTGTTTGGCGACAGCCTCTGTCTCCTTATTCTTCCATGGATTTCCAGCCAGCTCACTGTTCTTAGCTCTGCCACTTCTGAAAATCTAACCACAAATTGGATGCATTTAGAAACATGTCTATATATGTGTGAGAGATTCTACCTCGATTCTGGAGAAGACATGGAAATCTTCCCGATGTGTTTTAAAAACTTTGAGGGAAGCTTGAAAGGAAAAGTCTAAAAAGGGCAATATCAAGTTTGAGCTATTACAAATAGTATAAGAGCCAGACACTCGATGTGCCAGCGAGAAGATTTGGGGGGAGAAGAGAGAATGTTGGGCCACAAAATACCCTTTGAGGGTGTGGAAATTGCACTTGCATTTTAAAAACATTGAGAGAAAGTCGTAAGGGAAAGCCCGAAGGAGAAGCCAAAATTGAAAGGAAGTCCGAAAGGGAAAGCCTAAAGGAGAAGTCAAAATTGAGACCATATCTGCTAGTAGTAGACTTGTGTTGTTAGAAATGGTATTAGAGCCCGACACCAAGTGATGTGCCATCGAGAAGGCTGAGCCCTGAAGAGGGTTGACACAAGGCGGTGTGCCATCAAGGACATTGGATTCCAAAAGAAGGTGGATTTGGGAGGTCCCACGTCGATTTGACAAGGGAACGAGTGCCCATGAGGACTTTGAAAAGGGAACAAAAACTAAAAGTCAAAAGAATATAATATCTACTCAGGGTGGGTTTGAACTATTACGTATATACCTGGATTCTGGGTGCGGTTTCCAGCTCCAACACAGTGGATCAGAGCTCCATGTGATACCCAATTCTCTTGCTGACAGTATATAACAGATTTTCCCGGAAAATTTATCCAACTCGAAGCTCTGTAAAAACAGAGATGAATTATTCAACCAATAAGACGAACAGAGTCCGACAAAATGGTTTATGGGTTTCATTTATTTACCGTTTTACCGCCGTCGATGAGGATCGGAGAACAGAGCCGGAAAAAAATCTCTCTCTTCGACCCAAACGGAACTTCGTCGGAGATATCAGAGGCGGCGATAATCCGAGCGTAGTTTTCAGGCAAAAATCTTCCCCAAACGACGTCGGATTCCGCCGCTGGTCGGAACGCCGACGATATGAGGGATAGTTTCCCGACGTCGGCGGGAGTTGTGAGGGAGAGAATGGCGGAAAGACAGTCGTCCGGCAACATTCCGACGGTGAAAATTCCGGCCATTTTGTTGTTCGATATCAGCTAAGGAAGAGGAAACTGGAAATGGTTTTAAATAGATAAATTAACGGAGGATTATCTTTCTCTCTCCTACTCAGACTTTGGATGTACTTAACTTGGCACGTGCGAAGAGGGATTGTATATCCAAATTTGACCATCTCCTACTTCTTTATATTTGCAGATTAGTCCTC

mRNA sequence

TCGATAAATAGGGTTTTCGAAAGCCCTAAAACCATTGTCGTTCACTCCTAGCAGTCGCCGTCGCGGAGCGGAAGGGTTTCTCCACCAAGAGCTTCAATGGGGATCGATCTCGTAGCAGGAGGCAAGAGTAAGAAGGCCAAGAGGACTGCGCCTAAGTCCGACGATATCTACCTCAAGCTCCTCGTGAAGCTGTACCGATTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGGTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCCGACTTATCAAGTTCATGAAGGGAAAGGAAAATAAAATCGCTGTCATTGTCGGAACCGTGACCGACGACATTCGTGTTTATGAAGTCCCAGCTTTGAAGGTTACAGCCTTGAGGTTTACCGAGACTGCAAGGGCAAGGATCGAGAAGGCTGGTGGCGAGTGCTTGACCTTCGACCAACTTGCCCTGCGAGCTCCTCTTGGCCAGAATACGGTTCTCCTTCGTGGACCGAAGAACTCCCGAGAAGCCGTGAAGCACTTTGGTCCTGCTCCCGGTGTACCTCACAGCCACACGAAACCGTACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCTAGAGGAAAGAGGAACAGCAGGGGTTACAGAGTTTAGTTTCAGTACCATGTTCAGCGCTATTTGTGAGACAGAAAATTCACGTTTTGGTAAACTTGAAGATACATTATCATGTGAGATTCACTCGTTTCTTTGTTCAAGTTTTCGCTATTATAACATCACAATCGTATTCAATGAGAAACATCTTGTATTTTCTTTCCTCCCACTTTTCCATCCTTATTTGCTTCATATTTCAAAACTGTCCATATTGTTCTATGAACAAATTAGCCTTTAGTAAGTTTTTGGTATATCTATATATTTTACATACTATTTTGTATTTAATTGTTTCAATGTCAATATCAGTCGAACACGAGAGGTCGACCACCATGAGTGCCTGCCAAAGTTGAATGCTTTTGAGGACTTTGAGGTCGATCTCCATGGGGAATGAAGCATTCTTCATAAGGATGTGGAAACATCCCTCTAACTGGTACGTTTTAAAAACGGTAGACTTGAGATGTTACAATAGGGTCGTTCACTCTTGGATATTTTATTATAGATATTTTACATGACTCAATTTATGCCAAGTTTTGTCAATTTTTAGGCCTCCTTTGAGGTCGATCTCCATGGAGAATGAAGCATTCTTCTGTGGAAACATCCCTCTAGCTGGTGAGATATTTTATTATATATATTATACATGACTCAATCCGAATCCAGGAATCCCTTAGATATAAATACAAAATGGATCTTGTTCTATCGTTGATTAGGGATTTCTCTATGAATCATTTGGATTGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCGACCCGCGACCCGCAACAAATAACGGAGGATTTATTTGAGTTTTGTCAATTTTTAGGCCTAATTTGAATCCCTTCAACAATGATTCCAGCTTTGAGCTGAAAGCCTCTAATCTCCATTAAACTCATATGAACATCTTCTTCATCATCATCATCATCATCTTCCCCACTCATGAACTCTCCCAATTCAATCTCAAACCAACCGTCATCTCTCTCCTTCAAACCCCTTATGCCATTGTTTTCTTCTTCTTCCTCTGTTCCCATTAGATTCCTCACTCTTTCCCTTCTATTCCCATAAAACAAGCTCTCTAAATCTTCCTCCTTCCTCTGTTTCCGCTGCAGCCATACTCTGCCCTCTGAAATCCGCCCTCCATTCCCCACCGCCACCGAAACTTCCGCCGCCATCAAATCCAACCCATACGCTCTCTCTGTTATCTTCACTAGAAGGTACGCTCCGTACTCTGTGTTTGGCGACAGCCTCTGTCTCCTTATTCTTCCATGGATTTCCAGCCAGCTCACTGTTCTTAGCTCTGCCACTTCTGAAAATCTAACCACAAATTGGATGCATTTAGAAACATGTCTATATATGTGTGAGAGATTCTACCTCGATTCTGGAGAAGACATGGAAATCTTCCCGATGTGTTTTAAAAACTTTGAGGGAAGCTTGAAAGGAAAAGTCTAAAAAGGGCAATATCAAGTTTGAGCTATTACAAATAGTATAAGAGCCAGACACTCGATGTGCCAGCGAGAAGATTTGGGGGGAGAAGAGAGAATGTTGGGCCACAAAATACCCTTTGAGGGTGTGGAAATTGCACTTGCATTTTAAAAACATTGAGAGAAAGTCGTAAGGGAAAGCCCGAAGGAGAAGCCAAAATTGAAAGGAAGTCCGAAAGGGAAAGCCTAAAGGAGAAGTCAAAATTGAGACCATATCTGCTAGTAGTAGACTTGTGTTGTTAGAAATGGTATTAGAGCCCGACACCAAGTGATGTGCCATCGAGAAGGCTGAGCCCTGAAGAGGGTTGACACAAGGCGGTGTGCCATCAAGGACATTGGATTCCAAAAGAAGGTGGATTTGGGAGGTCCCACGTCGATTTGACAAGGGAACGAGTGCCCATGAGGACTTTGAAAAGGGAACAAAAACTAAAAGTCAAAAGAATATAATATCTACTCAGGGTGGGTTTGAACTATTACGTATATACCTGGATTCTGGGTGCGGTTTCCAGCTCCAACACAGTGGATCAGAGCTCCATGTGATACCCAATTCTCTTGCTGACAGTATATAACAGATTTTCCCGGAAAATTTATCCAACTCGAAGCTCTGTAAAAACAGAGATGAATTATTCAACCAATAAGACGAACAGAGTCCGACAAAATGGTTTATGGGTTTCATTTATTTACCGTTTTACCGCCGTCGATGAGGATCGGAGAACAGAGCCGGAAAAAAATCTCTCTCTTCGACCCAAACGGAACTTCGTCGGAGATATCAGAGGCGGCGATAATCCGAGCGTAGTTTTCAGGCAAAAATCTTCCCCAAACGACGTCGGATTCCGCCGCTGGTCGGAACGCCGACGATATGAGGGATAGTTTCCCGACGTCGGCGGGAGTTGTGAGGGAGAGAATGGCGGAAAGACAGTCGTCCGGCAACATTCCGACGGTGAAAATTCCGGCCATTTTGTTGTTCGATATCAGCTAAGGAAGAGGAAACTGGAAATGGTTTTAAATAGATAAATTAACGGAGGATTATCTTTCTCTCTCCTACTCAGACTTTGGATGTACTTAACTTGGCACGTGCGAAGAGGGATTGTATATCCAAATTTGACCATCTCCTACTTCTTTATATTTGCAGATTAGTCCTC

Coding sequence (CDS)

ATGGGGATCGATCTCGTAGCAGGAGGCAAGAGTAAGAAGGCCAAGAGGACTGCGCCTAAGTCCGACGATATCTACCTCAAGCTCCTCGTGAAGCTGTACCGATTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGGTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCCGACTTATCAAGTTCATGAAGGGAAAGGAAAATAAAATCGCTGTCATTGTCGGAACCGTGACCGACGACATTCGTGTTTATGAAGTCCCAGCTTTGAAGGTTACAGCCTTGAGGTTTACCGAGACTGCAAGGGCAAGGATCGAGAAGGCTGGTGGCGAGTGCTTGACCTTCGACCAACTTGCCCTGCGAGCTCCTCTTGGCCAGAATACGGTTCTCCTTCGTGGACCGAAGAACTCCCGAGAAGCCGTGAAGCACTTTGGTCCTGCTCCCGGTGTACCTCACAGCCACACGAAACCGTACGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCTAGAGGAAAGAGGAACAGCAGGGGTTACAGAGTTTAG

Protein sequence

MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGYRV
Homology
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BLAST of CmoCh12G010620.1 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 8.1e-89
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK KRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GK++KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

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BLAST of CmoCh12G010620.1 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-88
Identity = 161/187 (86.10%), Postives = 178/187 (95.19%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK KRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GKE+KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]
BLAST of CmoCh12G010620.1 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.0e-83
Identity = 156/184 (84.78%), Postives = 173/184 (94.02%), Query Frame = 0 

Query: 4   DLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KK KRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYRV 188
           G+RV
Sbjct: 181 GFRV 183

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BLAST of CmoCh12G010620.1 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 291.6 bits (745), Expect = 6.4e-78
Identity = 148/188 (78.72%), Postives = 166/188 (88.30%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK KRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYRV 188
           R SRG++V
Sbjct: 181 RRSRGFKV 188

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BLAST of CmoCh12G010620.1 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-65
Identity = 127/188 (67.55%), Postives = 158/188 (84.04%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGID +     +K  R  PKS+++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP
Sbjct: 1   MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKP 60

Query: 61  PISLSRLIKFMK--GKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
            ISL+R+ +FMK  G+EN IAV+VGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE
Sbjct: 61  VISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGE 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 180
            LTFDQLA++AP G+ TVL++GP+NSREA +HFGPAPGVPHSHTKPYVRSKGRKFERARG
Sbjct: 121 ILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRNSRGYR 187
           +R SR Y+
Sbjct: 181 RRKSRRYK 187

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BLAST of CmoCh12G010620.1 vs. ExPASy TrEMBL
Match: A0A6J1FC57 (60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.4e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]
BLAST of CmoCh12G010620.1 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.1e-96
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]
BLAST of CmoCh12G010620.1 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]
BLAST of CmoCh12G010620.1 vs. ExPASy TrEMBL
Match: A0A6J1DTG6 (60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]
BLAST of CmoCh12G010620.1 vs. ExPASy TrEMBL
Match: A0A6J1G525 (60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.5e-95
Identity = 184/187 (98.40%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKF KGKE+KIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]
BLAST of CmoCh12G010620.1 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 327.8 bits (839), Expect = 5.7e-90
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK KRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GK++KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]
BLAST of CmoCh12G010620.1 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-89
Identity = 161/187 (86.10%), Postives = 178/187 (95.19%), Query Frame = 0 

Query: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK KRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++FM GKE+KIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]
BLAST of CmoCh12G010620.1 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.6e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0 

Query: 54  MSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]
BLAST of CmoCh12G010620.1 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.6e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0 

Query: 54  MSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:
BLAST of CmoCh12G010620.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q940B08.1e-8986.6360S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1[more]
P427911.8e-8886.1060S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2[more]
O657293.0e-8384.7860S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV... [more]
O222546.4e-7878.72Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P... [more]
Q4PM041.3e-6567.5560S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1[more]
BLAST of CmoCh12G010620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FC576.4e-97100.0060S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 P... [more]
A0A6J1HQ857.1e-9698.9360S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=... [more]
A0A6J1KGZ81.6e-9598.4060S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=... [more]
A0A6J1DTG62.7e-9597.8660S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 ... [more]
A0A6J1G5253.5e-9598.4060S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 S... [more]
BLAST of CmoCh12G010620.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27850.15.7e-9086.63Ribosomal protein L18e/L15 superfamily protein [more]
AT3G05590.11.3e-8986.10ribosomal protein L18 [more]
AT2G47570.16.6e-5477.04Ribosomal protein L18e/L15 superfamily protein [more]
AT2G47570.26.6e-5477.04Ribosomal protein L18e/L15 superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 2..187
e-value: 2.5E-95
score: 317.2
NoneNo IPR availableGENE3D3.100.10.10coord: 1..187
e-value: 3.3E-101
score: 338.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..187
NoneNo IPR availablePANTHERPTHR10934:SF1960S RIBOSOMAL PROTEIN L18-1-RELATEDcoord: 1..186
IPR000039Ribosomal protein L18ePANTHERPTHR1093460S RIBOSOMAL PROTEIN L18coord: 1..186
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 20..139

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh12G010620CmoCh12G010620gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G010620.1:exon:1984CmoCh12G010620.1:exon:1984exon
CmoCh12G010620.1:exon:1983CmoCh12G010620.1:exon:1983exon
CmoCh12G010620.1:exon:1982CmoCh12G010620.1:exon:1982exon
CmoCh12G010620.1:exon:1981CmoCh12G010620.1:exon:1981exon
CmoCh12G010620.1:exon:1980CmoCh12G010620.1:exon:1980exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G010620.1:three_prime_utrCmoCh12G010620.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G010620.1:cdsCmoCh12G010620.1:cds_5CDS
CmoCh12G010620.1:cdsCmoCh12G010620.1:cds_4CDS
CmoCh12G010620.1:cdsCmoCh12G010620.1:cds_3CDS
CmoCh12G010620.1:cdsCmoCh12G010620.1:cds_2CDS
CmoCh12G010620.1:cdsCmoCh12G010620.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh12G010620.1:five_prime_utrCmoCh12G010620.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh12G010620.1CmoCh12G010620.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003729 mRNA binding