CmoCh09G005690.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh09G005690.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiont-SNARE coiled-coil homology domain-containing protein
LocationCmo_Chr09: 2759106 .. 2762561 (-)
Sequence length476
RNA-Seq ExpressionCmoCh09G005690.1
SyntenyCmoCh09G005690.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTACGCCTCGCCAACGCGCCTCTGATAAACGGGAGCCGGAAAATCCCGATTTGCTCTGTGCTCTCACCTTCCGAACCGAAGACTCTGAAACTGATCCTCGCAATTCGTCTGTTTCCGATCAGATTGTTCCAGTTCTGATTAGCTTTTCATTCTGTATCTAATGGCATCCAGTTCGTTCCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGTATTGTCATCGTTCTTATCATGCTAAGTTCCCAGTATATTTACAGAAATTAGAGGTATTGCAAGAAATGCGAGTTTTCTGTCACTTGTCTTGAGGAATTTCTCAAATTGTTTCTATGTTTACCGGTGTTAAGAATGGTGATTACTCAATTCATGTCGCTTAATTGCAATCGTCCTTCGTTTTGAGGTATTCAGGGAGGGTCTTAGCACAAGAACGGCGGCTGCCTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGCCAAGTTAAAAGGCTTAGAAATGTGAGTATTATGATTTTACGTTAATATATGGTACAGCTTTGCACTTAGGTTTATTGAATTGCAAACTAGAACACGCAGCTAAGCCTTTATTGAAAGCACTCGGTGCTGGTATCTTCATCGAATAACTAGAAATAAAGTACTCGACAGAAATCTGAACAGAAATCTTCAGATTTCTTGCGGTGCTCCTATAATATTTGAATTTAGCTATGTTCGAGGTTGATCTACTTGTAATGGTACTCTTGGAATTTGCATTGCTCGTGGTTCCTTTCTTAATGGAATTTACGAGCTGTACGTTCTGTATCAATACATCTCACGTGGTATAGCTGCATGCTATGTGCTTAGTGTTCGATTTCATTATCATGGCGGTCACAGACATTGTTTTCTTTCTGTGAAATTTTGTGAGTTTCCCTCCCTTCTTAGAAGAACGAAATATATGATACGTTACATTCGACTGGTACAAGTTGAATCCATATTTACGAGTCTTTGTAGATGCTGTTCTTGTCTTTTGGCTCATCACCATTCAAAACGTATCATAGGCAATGAAAGAAATGCGTAATAGTAATGTAACAAGCATATCAATACAAATTATAATTGTCTGAAGAATCCTACTGAAACACAAACTGCATAGCATTCATTATTAGATCATCAACAAAATTCAGACGAACTAATTGCTTACCTTGTTTTCCTTCTCAAAAATGAGTTTGGAAAATAAAACCCCTGCAAATTCAAGACACAAAAACACGAGGCAAACCACAGTTTGAACCGTGCACAATTCTCTATCAACTACCATTAAAAGACTTCTAAAATCTCTTATCGAATTCATCCATGGTCATTCTGTTTTCTGGCAGTGGCTGTAATGCAGTTCTCACCTTCCCCCCACCTCCAACAACTTTTGATTTTTATTGTCCATCTTCTTTTTGCTAAGTTGGAGTTGTTCCTTGGACGTCGTTCTCCGCTGTTTTTGGCTCGTATCATTTTTCTCTACAATTTGCCTCTGAATGCAATTTTCTTTTTTCCCGTTCTTTTTCTTCTTCTTCTTCTTCAGCACCTTAGTTGTACATTAGCAGCCTGATGGTTTGTTCCTTGAGTGGAGATTTGGTTTCTACAACAGTTGGTCTAGGAAATTGGTTTGCCAACACACCAGTTGTATGCCATCAAAATCTCGAAAATGAGGGGCATCTTTGCTTGACTGTCCAATTTTCTTCTTACAACAACATTATTATTATTTGTAGAAAGATTTGTTTCTAAACGTTTAGCTAAGCGTTCTAGTGGGTTTGGTTTGAGCTGGTGCATGCCTAATTGTATGGCGGTCAATGTTGAGCAGCCCCTTCTGTCTCATATTATCGACGAAAGCTCGTCTTGTTTCTTATTGAGTAAAAAAGAACAGATTGTGTAATGTTTTCTGGTCCAAAAGTCTCACAGTGTTATCATAATCTTAATCTTGTTGAGATCCTGTACAGAGTATATATGCCAGTTCGTTTAATTAATTCCATATTCGGCTTTTGATCTTTACAGATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGGTATGCAATTTTTTTCTTAATGCTATTCATAGTTGTCATATTTCCATTTGTTTTTTGTATGTTGATTTAATTCTTGGTTTTTACTTACTGACGTTCTTACTTGTGAGAAAACTCTTTAGGTCCTGATTACTTGAGAAAATGGAAAATGATGGATAGAATGAGAATTTAAATTTTAAATATTGCATTTATTAAAATTATATTGGTACAAGGATCGGAGTGTTAATTATTCCAATTAATTGATTCCTCTTGGGATGATGGTAGGGAATGGAGTAAAATTATACAGGTTGCCTCAGTTTTTATCCTACCTATAATGGCCTAAACCCACCGCTAGTAGATAATGTCTTCTCTAGACTTTGCCTTTCGGGCTTCTCCTCAAAGTTTTTAAAACGTGTATTCTAGGGAGAGGTTTTCATACCCTTACAAAGAATGTTATCCGGTGTGAGATCTCACAATCCACCCTCCTTCAAGGCTCAGCGTCCTTGTTGGCACACTACTTCGTGTCCATCCCCCTTGAAGGCTCAACCTCCTCATTGGCACATCGTCCGGTATCTGGCTCTGATACCATTTGTAATGTCCCAAACCCACCACTAGTCTCATATCTGATACAATTTGCTAATGATGGGCTTGGGCCGTTACACTACCTCTTGCCAAAAGATAGAGTGGAGCAAAATAGAGAACAAACGAACAAAACAAATCAACGGTTCCCTTGATAACTAAAGTATAAAATGCATAGAGCCCTATCAGATTAAAAGAAACTAACTAAAGAAAATCATTCTCATATCAACTTGTATCAGTTCCAAACGTGTGCAATCGCCAATATTCTTTTAGTTCTAACATATCCGATCATCTGTTTTCGGTCTTGTTGCAGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGTAAGAAGATTGAACAAAAAAATCATACAGAACGGATCAAATCACGTCGTCCAGGTCGTCATATTTGCATTGATCTGTTTCTTTATAGTGTATACGTGGATGAAAATATCCAGAAAATGAATGTTCTTCCTCATTTTCTTCCTCATTATGAATGAAATACCAGTTTGCTGGCCAGCAAAAAAGGGAAAAGAAACAGGAATGATGTTGAATATATTATCGCTGTCTCCCCCTCAGCTTAGAATATGGGACAGTGAAAATAGGCTTTTGATTTTCTCTTATAGGAACATTTTTAGTGTACTTTTATACGCTATAAAGATTTGTATTGTGTCTCGTGACTATTAGAGTATTATTCGTTAATTCATTTATTCCTAAGGTTATTTCTAATTTCTATTGTGACTTTTAGGAGAGGAAAAGACCTTTTAACTGA

mRNA sequence

TTTACGCCTCGCCAACGCGCCTCTGATAAACGGGAGCCGGAAAATCCCGATTTGCTCTGTGCTCTCACCTTCCGAACCGAAGACTCTGAAACTGATCCTCGCAATTCGTCTGTTTCCGATCAGATTGTTCCAGTTCTGATTAGCTTTTCATTCTGTATCTAATGGCATCCAGTTCGTTCCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGGAGGGTCTTAGCACAAGAACGGCGGCTGCCTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGCCAAGTTAAAAGGCTTAGAAATATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGAGAGGAAAAGACCTTTTAACTGA

Coding sequence (CDS)

ATGGCATCCAGTTCGTTCCGTGGCGGTAGTTCCTTCTACAATGGCAACGCTGCTCCTTATCGCTCCAGGGAGGGTCTTAGCACAAGAACGGCGGCTGCCTCCGATGAAATTCAACTTCAGATCGATCCGATGCAAGGGGACTTGGACGACGAGATCGTAGGTCTTCACAGCCAAGTTAAAAGGCTTAGAAATATTGCTCATGACATTGGGACAGAAGCAAAGTTCCAGCATGATTTTCTAGATCAATTGCAAATGACATTGATCAAAGCTCAAGCAGGGGTGAAGGACAATGAGAGGAAAAGACCTTTTAACTGA

Protein sequence

MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERKRPFN
Homology
[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy Swiss-Prot
Match: Q8VXX9 (Bet1-like protein At4g14600 OS=Arabidopsis thaliana OX=3702 GN=At4g14600 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 0 

Query: 1   MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQ 60
           MAS+  R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH Q
Sbjct: 1   MASNPHRSGAGGSLY-GGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQ 60

Query: 61  VKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           V++L+NIA +IG+EAKFQ DFLD+LQMTLI+AQAGVK+N RK
Sbjct: 61  VRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRK 101

[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy Swiss-Prot
Match: Q8L9S0 (Bet1-like protein At1g29060 OS=Arabidopsis thaliana OX=3702 GN=At1g29060 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.6e-30
Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV+
Sbjct: 1   MASNRGAGGSLY--GGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVR 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           +L+NIA +IG+EAK Q DFLD+LQMTLI+AQAGVK+N RK
Sbjct: 61  QLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRK 98

[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy TrEMBL
Match: A0A6J1IFD8 (bet1-like protein At1g29060 OS=Cucurbita maxima OX=3661 GN=LOC111476742 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.9e-46
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Sbjct: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy TrEMBL
Match: A0A6J1F6I9 (bet1-like protein At4g14600 OS=Cucurbita moschata OX=3662 GN=LOC111442618 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.9e-46
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Sbjct: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy TrEMBL
Match: A0A5A7TAQ3 (Bet1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005890 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.2e-41
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAPFRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy TrEMBL
Match: A0A1S3CQM7 (bet1-like protein At1g29060 OS=Cucumis melo OX=3656 GN=LOC103503676 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.2e-41
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAPFRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. ExPASy TrEMBL
Match: A0A0A0LHL4 (t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889980 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AA +RSREGLSTR AA+SDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAHFRSREGLSTRPAASSDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. NCBI nr
Match: XP_022935829.1 (bet1-like protein At4g14600 [Cucurbita moschata] >KAG7024568.1 Bet1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Sbjct: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. NCBI nr
Match: XP_022976307.1 (bet1-like protein At1g29060 [Cucurbita maxima] >XP_023535245.1 bet1-like protein At1g29060 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN R+
Sbjct: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. NCBI nr
Match: KAG6591687.1 (Bet1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 3   SSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRL 62
           +SSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRL
Sbjct: 148 NSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVKRL 207

Query: 63  RNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERKRP 103
           RNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDN  K P
Sbjct: 208 RNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNPGKSP 247

[Close]
BLAST of CmoCh09G005690.1 vs. NCBI nr
Match: XP_008466185.1 (PREDICTED: bet1-like protein At1g29060 [Cucumis melo] >KAA0038681.1 bet1-like protein [Cucumis melo var. makuwa] >TYK31291.1 bet1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYNG+AAP+RSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNGDAAPFRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. NCBI nr
Match: XP_038896659.1 (bet1-like protein At1g29060 [Benincasa hispida])

HSP 1 Score: 174.5 bits (441), Expect = 4.8e-40
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MASSSFRGGSSFYN NAA YRSREGLSTR AAASDEIQLQIDPMQGDLDDEIVGLHSQVK
Sbjct: 1   MASSSFRGGSSFYNSNAAAYRSREGLSTRPAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           RLRNIA DIGTEAK Q DFLDQLQMTLIKAQAGVK+N R+
Sbjct: 61  RLRNIAQDIGTEAKSQQDFLDQLQMTLIKAQAGVKNNVRR 100

[Close]
BLAST of CmoCh09G005690.1 vs. TAIR 10
Match: AT4G14600.1 (Target SNARE coiled-coil domain protein )

HSP 1 Score: 137.1 bits (344), Expect = 8.0e-33
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 0 

Query: 1   MASSSFRGGS--SFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQ 60
           MAS+  R G+  S Y G AAPYRSREGLSTR AA S+EIQL+IDPM  DLDDEI GLH Q
Sbjct: 1   MASNPHRSGAGGSLY-GGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQ 60

Query: 61  VKRLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           V++L+NIA +IG+EAKFQ DFLD+LQMTLI+AQAGVK+N RK
Sbjct: 61  VRQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRK 101

[Close]
BLAST of CmoCh09G005690.1 vs. TAIR 10
Match: AT1G29060.1 (Target SNARE coiled-coil domain protein )

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-31
Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 0 

Query: 1   MASSSFRGGSSFYNGNAAPYRSREGLSTRTAAASDEIQLQIDPMQGDLDDEIVGLHSQVK 60
           MAS+   GGS +  G A PYRSREGLSTR A+ S+EIQL+IDPM  DLDDEI+GLH QV+
Sbjct: 1   MASNRGAGGSLY--GGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVR 60

Query: 61  RLRNIAHDIGTEAKFQHDFLDQLQMTLIKAQAGVKDNERK 101
           +L+NIA +IG+EAK Q DFLD+LQMTLI+AQAGVK+N RK
Sbjct: 61  QLKNIAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRK 98

The following BLAST results are available for this feature:
BLAST of CmoCh09G005690.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VXX91.1e-3171.57Bet1-like protein At4g14600 OS=Arabidopsis thaliana OX=3702 GN=At4g14600 PE=2 SV... [more]
Q8L9S03.6e-3069.00Bet1-like protein At1g29060 OS=Arabidopsis thaliana OX=3702 GN=At1g29060 PE=2 SV... [more]
BLAST of CmoCh09G005690.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IFD84.9e-4698.00bet1-like protein At1g29060 OS=Cucurbita maxima OX=3661 GN=LOC111476742 PE=4 SV=... [more]
A0A6J1F6I94.9e-4698.00bet1-like protein At4g14600 OS=Cucurbita moschata OX=3662 GN=LOC111442618 PE=4 S... [more]
A0A5A7TAQ36.2e-4191.00Bet1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00... [more]
A0A1S3CQM76.2e-4191.00bet1-like protein At1g29060 OS=Cucumis melo OX=3656 GN=LOC103503676 PE=4 SV=1[more]
A0A0A0LHL41.5e-3989.00t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=365... [more]
BLAST of CmoCh09G005690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935829.11.0e-4598.00bet1-like protein At4g14600 [Cucurbita moschata] >KAG7024568.1 Bet1-like protein... [more]
XP_022976307.11.0e-4598.00bet1-like protein At1g29060 [Cucurbita maxima] >XP_023535245.1 bet1-like protein... [more]
KAG6591687.11.5e-4496.00Bet1-like protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_008466185.11.3e-4091.00PREDICTED: bet1-like protein At1g29060 [Cucumis melo] >KAA0038681.1 bet1-like pr... [more]
XP_038896659.14.8e-4091.00bet1-like protein At1g29060 [Benincasa hispida][more]
BLAST of CmoCh09G005690.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14600.18.0e-3371.57Target SNARE coiled-coil domain protein [more]
AT1G29060.12.6e-3169.00Target SNARE coiled-coil domain protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.110coord: 44..101
e-value: 1.3E-7
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR12791:SF55BNAC03G58880D PROTEINcoord: 9..100
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 37..97
IPR039897BET1-like proteinPANTHERPTHR12791GOLGI SNARE BET1-RELATEDcoord: 9..100
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 42..83
score: 9.100256

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh09G005690CmoCh09G005690gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh09G005690.1:exon:3273CmoCh09G005690.1:exon:3273exon
CmoCh09G005690.1:exon:3272CmoCh09G005690.1:exon:3272exon
CmoCh09G005690.1:exon:3271CmoCh09G005690.1:exon:3271exon
CmoCh09G005690.1:exon:3270CmoCh09G005690.1:exon:3270exon
CmoCh09G005690.1:exon:3269CmoCh09G005690.1:exon:3269exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh09G005690.1:cdsCmoCh09G005690.1:cds_5CDS
CmoCh09G005690.1:cdsCmoCh09G005690.1:cds_4CDS
CmoCh09G005690.1:cdsCmoCh09G005690.1:cds_3CDS
CmoCh09G005690.1:cdsCmoCh09G005690.1:cds_2CDS
CmoCh09G005690.1:cdsCmoCh09G005690.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh09G005690.1:five_prime_utrCmoCh09G005690.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh09G005690.1CmoCh09G005690.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0030173 integral component of Golgi membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000976 transcription cis-regulatory region binding