CmoCh08G000040.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G000040.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr08: 28313 .. 31332 (-)
Sequence length801
RNA-Seq ExpressionCmoCh08G000040.1
SyntenyCmoCh08G000040.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTTCTTGGTCGGAGACGGAGACGCCAGCAGCGTGGAGGGCGGAGGCCGGGATAGTACCGGAGCCAGTAGCGGCGATGATGGACGGCTCGGCCTGCTGTAGAAGCCACTGAATGGTCTCCCCATCGGTTTTATGGCCTAATTCGCGAGTCAATTGAAAGACGCGGGCGGCGCAGAGGGCAGGCATGCGGATCCTGCGGCCACGGCCATCGACTTTCTTGTGACGATCTTTGTTGGAGGTGCGTTTAGGAGCCAATTGTTGGTGGTGTTTGTTTTCATCTTTGGATGCAATTATGATATTGAAGTCTTTGATATCTGCTGATGGTGGTGGTGGTGGAGTTATTGTTGTTGGAGTTGATGCTGGTGGTGATGGCTTCTTCTTGTTGTGCTCTGCCATGTCTGCTAATGGGTGTGGGGATGGGGGGGCGGGGGGAGGACCCAAACAAAGGTGGGTTCCTCTGTGTGGACTAATGGGGTTTATGGGAGGAGGAGAGGAGAAAGAGAGAGATAGTCAGAAAAGAAAATGGGTCCTCCTCCTCCATGATTGAGTTGTTTGAAGAAGCTGACTTGGCTCACTCTTTTCTTTTTATTTTTTGACTCAAAATGGGGATTTCGAGCTTCCACTGTGTGCTTTTAAATGCATTACAGCTTGCTTCACCTCTCATCTTGTCATAAAGTCCAAACCAAAAGTGGATGAAATTTTAGTGTTTCTGGTGTTGCCTATTCATTCATATTACAATTAACTGTAATCTGAATTTAACTGCTCGCAGGGTTATGAACTGCGTTTATTTACTCCTTCTCCTTCTCCAGCATGTTTATCACATCTTACAACTATTTACTCCTTCTCCTTCTCCTTCATGTTTATCACATCTTACAACTATTTACTCCTTCTCCTTCTCCTTCATGTTTTATCACATCTTACAACACTTCCTCACTTCTCTAATCATCCACAAATTTATATGGTGGGTCAACTCAAATTAATATCAAATCGGTACAAATTTGGACTTTTCTTTTTCATTTTTGTTTAGTTTATGATCAGCCTCCTTTTATGGTTGAAATTAAATTTGGAAATATAAGTTTTTTTTTTTTTTTTTTGGGTGCAATAACTTTTTTAGGGCATGAAATGTTTTGGCTAATCGAAAAATGTGTGGAATTGGTGATTCTGATAAGCTATAGTAGCAATTATTAGTTGACATGTTGGATCATTATGATACCAGCTCTTACCAAACCAAATCTCCTTGCCAATCATATTGTTTCCTAGTTTTTAAAACCCTTACTCATTTTGTGCCACTAACTCACTGAATTGCTGAGCTTTTTCCCCCTTTCCCCCCTTTCCCCCCTTCATATATATATATATATGATTCCTTCAAAAACTTCTGTTCATGCTCAGCATCAACTTCAACAATTCAAATTTCATACTCCACTACTCCACCTACCATGTCAATTACCCCCAACATGTCTTCATTTTCGCAATTTAAATTCTCAATAATTATTGTGATGGAAGAATAAAAACGTTAGCAATTTTTAAAATAGTTTTGTGTTTCGTATGTTTTCCTTGTTTTTAAGATAAATTATGCAAGATCTCATGTCGATTGGAGAGAAAAACGAAACATTTTGTGCTAATTGATATTGTCAATCTCACGATTTTAAAATGTATCTATTAGGGATGATGAGAGTGAGTTCACATGTTGAGGTAGATAAGGTTTTAGAAGAATTTTGGTGGTTTTTTTTTTTTTTTTTTTTTTGTTAAGATGAATTTGAATTCTACCCATGATATCATTATTTATTAATTAAAGTATTAATGTTTTAATAAAAGTGCTCTAACGTTGGGTTTCTTTCTTTTCCTTGGAATTTTGATGGTGATTGGTAATGCGACAAAACACATTACAAAGAAATGTCAGCTTATTTGGGCAACAAATTTCCACTACACTTTTCTTGCTTTCATACTTGAAAATTGGAAATTTTAGGGGAAAATTTTCATTTGGAAAGAAAAAAAGAAAAAAAGGAGACGATAATAATGGGTAGGTGGCTAACATTTGTCCTTTTCTTCCATGGTTTCACATCCTGTGTTGGCCACCGAGGGAACACCTATGGGTCCCTTCTCTTAAAAACTTTGCCATTGACATATCACCCACCCTTTTCCAACATTTCCTTTTTCTTTTTTATTTTTTAAAACAATAAAATTATTGTTGAATTGGTTTTCAAAGGCGGTGTTTTTATTACATCACGAGTCTGAGGAGGAGGCTTTGTTTCATGAAATAATTGTCCTTTCCTATTGGGAATCAAAATTACATTCTTTCTCTGTCTTCTTTGTTTCCAAGTAGTTTCTAAGTCTGTTCCAGCTTGAATTTCATGCATCATTATAATGTCTTTTTTGGTATTAAGTCTTCTCTTGCAATGAAGGCCTGTGGTGGTTTCCTTCTCCTTTTCACTCCCATCCGCACGGTTGAGACGCCCTCCAGGGTGCCCACCTCTTCCGCTTCTTTCTTTTTCTTGCTCTTCCTTTTCTTCCTCCTTTTCCTCAATCAATACCCTCATACTTTCATGACCAACATGATTTTGCAGCACCCAGCTTTTGTTCTCCCACGACGCGGATGACAATGACACTGACGAGGAACAACAAACATCTTGGGGTGAGGTGAAGACCCAAAGCATAGCCGGAGGGAATGGATTAGATTGGGAAGATAGCTAATGCTAAAGATGAAGATGATGAGAGTGAAGACTGAGATTGTTTTCCTTATGAGTTTATAAGATGGAAGCCTTCAATCTTTTATCATTATCATTATGACACCAGAACTAGAAGGAAAAAGACAAATAAAAAAAATAAAACCAAAGCCGGAGTTGTTAGTTGGGACTCATTAATTGTGCAATAAAGATTGGTGTTTTGAATTCTGGAAATTTTGGGTTCCTTGTGCACAAAGTAGCCAAATAAGATATTTTGGTGGTGGGATTCAAACAATGCTACACTTTAATAATTGTGTGGTAACTTTTTGAAAAGTTAAAGAAGCATAGAGAA

mRNA sequence

ATGGAGGTTTCTTGGTCGGAGACGGAGACGCCAGCAGCGTGGAGGGCGGAGGCCGGGATAGTACCGGAGCCAGTAGCGGCGATGATGGACGGCTCGGCCTGCTACGCGGGCGGCGCAGAGGGCAGGCATGCGGATCCTGCGGCCACGGCCATCGACTTTCTTGTGACGATCTTTGTTGGAGGTGCGTTTAGGAGCCAATTGTTGGTGTCTTTGATATCTGCTGATGGTGGTGGTGGTGGAGTTATTGTTGTTGGAGTTGATGCTGGTGGTGATGGCTTCTTCTTGTTGTGCTCTGCCATGTCTGCTAATGGGTGTGGGGATGGGGGGGCGGGGGGAGGACCCAAACAAAGCACCCAGCTTTTGTTCTCCCACGACGCGGATGACAATGACACTGACGAGGAACAACAAACATCTTGGGGTGAGGTGAAGACCCAAAGCATAGCCGGAGGGAATGGATTAGATTGGGAAGATAGCTAATGCTAAAGATGAAGATGATGAGAGTGAAGACTGAGATTGTTTTCCTTATGAGTTTATAAGATGGAAGCCTTCAATCTTTTATCATTATCATTATGACACCAGAACTAGAAGGAAAAAGACAAATAAAAAAAATAAAACCAAAGCCGGAGTTGTTAGTTGGGACTCATTAATTGTGCAATAAAGATTGGTGTTTTGAATTCTGGAAATTTTGGGTTCCTTGTGCACAAAGTAGCCAAATAAGATATTTTGGTGGTGGGATTCAAACAATGCTACACTTTAATAATTGTGTGGTAACTTTTTGAAAAGTTAAAGAAGCATAGAGAA

Coding sequence (CDS)

ATGGAGGTTTCTTGGTCGGAGACGGAGACGCCAGCAGCGTGGAGGGCGGAGGCCGGGATAGTACCGGAGCCAGTAGCGGCGATGATGGACGGCTCGGCCTGCTACGCGGGCGGCGCAGAGGGCAGGCATGCGGATCCTGCGGCCACGGCCATCGACTTTCTTGTGACGATCTTTGTTGGAGGTGCGTTTAGGAGCCAATTGTTGGTGTCTTTGATATCTGCTGATGGTGGTGGTGGTGGAGTTATTGTTGTTGGAGTTGATGCTGGTGGTGATGGCTTCTTCTTGTTGTGCTCTGCCATGTCTGCTAATGGGTGTGGGGATGGGGGGGCGGGGGGAGGACCCAAACAAAGCACCCAGCTTTTGTTCTCCCACGACGCGGATGACAATGACACTGACGAGGAACAACAAACATCTTGGGGTGAGGTGAAGACCCAAAGCATAGCCGGAGGGAATGGATTAGATTGGGAAGATAGCTAA

Protein sequence

MEVSWSETETPAAWRAEAGIVPEPVAAMMDGSACYAGGAEGRHADPAATAIDFLVTIFVGGAFRSQLLVSLISADGGGGGVIVVGVDAGGDGFFLLCSAMSANGCGDGGAGGGPKQSTQLLFSHDADDNDTDEEQQTSWGEVKTQSIAGGNGLDWEDS
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh08G000040.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G000040.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G000040.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh08G000040.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..158

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh08G000040CmoCh08G000040gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh08G000040.1:exon:4973CmoCh08G000040.1:exon:4973exon
CmoCh08G000040.1:exon:4972CmoCh08G000040.1:exon:4972exon
CmoCh08G000040.1:exon:4971CmoCh08G000040.1:exon:4971exon
CmoCh08G000040.1:exon:4970CmoCh08G000040.1:exon:4970exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh08G000040.1:three_prime_utrCmoCh08G000040.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh08G000040.1:cdsCmoCh08G000040.1:cds_4CDS
CmoCh08G000040.1:cdsCmoCh08G000040.1:cds_3CDS
CmoCh08G000040.1:cdsCmoCh08G000040.1:cds_2CDS
CmoCh08G000040.1:cdsCmoCh08G000040.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh08G000040.1CmoCh08G000040.1-proteinpolypeptide