CmoCh06G009270.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G009270.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L25
Location	Cmo_Chr06: 6740690 .. 6743549 (+)
Sequence length	1499
RNA-Seq Expression	CmoCh06G009270.1
Synteny	CmoCh06G009270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGAAAGAAGGAGTACATCTTAACCAGCAGGTTCAGTCGACAACTCCAGCCGCCTCACCTCAAGCTCTCGCTCTTATTTCACTCCAACGGCGACGGCACCAGCAGCCTGCGGCGAAGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTTCAACCTCTACGGCCGTCTCAACGGAACTCACCTTCTACGAATTGACCTAAATCGGTACAATACCCCTTCAGATTTCTCCACTAAAACCCTCCCTTAAGCCCTTCCGTTCATCCTTCTCCGCCCAATGCTACGCTTCTACCACTCTCCTACTCTCTCAAGAGTCCTCCTCCTCCGGAGGTTTTCCTCCGCTGCCACCGCCACCGCTCCACCCCTTGATTCCGATCCCGAACCTTCATTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCGAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGAAAGAACATTTCCGCTAAAGAGCGCAAGGTTGGCCGCGTTCCAAGCATCGTGTTCGAGCAAGAGGACGGTCAGCATGGCGGAAATAAGCGTCTCATATCTGTACGGACTAATCAAATTAGGAAGCTTGTAAATCATCTAGGTCGCTCTTTCTTCCTCTCCAGGCTTTTTGATCTCGAAGTTCGGTCCGAGTTCGAATCCGGGGATATTGTTGAGAAGGTTCGGGTCTTACCTCGGAAGGTACTCTATTATCTTGTCTGTAAGGACTAAATTTCGCTTAGGAACTTTCATGAAATTTCCAACTTATTGAGTTTATGAGATGATTTATGAGGAGGATTAGAATAATTGATTGTTTCATGGTCGTAAAGGAGCTGAGAGCATTGTGCACACTGTAGTTTCAATGATCATTATATTTCATGTATATGTTTTGATTAATCAGAAGATAAGAAGATGGGTTTAGTTCAATTTTGATCATAAGTTAGTGTAAGATCTTGTGAGAATATATATAATATAATACCCATTCTGAACTTGCACCATTCATGTTTGTTCAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACACGCTTTATTAAAAGTTGATGTACCTCTTGTTTTCCGAGGGGAAGATGTATGCCCTGGATTGAGGAAAGGTACTGCTGCAAGACTAAGTTCCTTTTATTTGATTTTCTTTAAAGTCTATAAATGTTATGCAGTAATTTATAAGATTTGAAGATATAACAGCTTTTTGTTTGGGTGGGATTTCGTGAGATCCCACATCAGTTGGGGAGGAGAACAAAACATCCTTTATAAGAGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAAAAACCTTGCGGGGAAGCCCGAAAGAGAAGCCTAAAGAGGATAATATTTGCTTGTGGTGGGCTTCGGTTGTTATAAATGGTATTAGAGCCAGACACCGGGCGATGTGCTAGTGAGAAGGTTGAGCTCCCCGAAGGGGGTGGACACGGGGCGGTGTGCCAACAAGAATGCTGGATCCCAAAGGGGGGTGGATTTGGGGGTCCCACCTCAATTGGAGAAGGAATGAGTGCTAGCGAGAAAGTTGGGCTCCGAAGGGGGGTGAATTGTGAGATCCCATATCAGTTGGGGAGGAGAACGAAATACCCTTTATAAGGGTGTGGAAATAGCAGTTTATAAGGGTATGGAAATAGCAGTCGCGTTTTAAAAACATTTAAGGGAAAACCAGAATGGGAAAGCTCAAAGAGGACCATATCTGCCAGCTGTGGGCTTGGACGGTTACAGATTTACTTTGAAACTATCATTGACATGGGATTCTTGAATTCTCCAGCTAGATGGGGATATGGATCTAAATATGTTAATATTACCAGAATTTAGCTTCTGTTAAATTGAAACATCAGGTTTGTTTTCTGATAGATCGGGTCTAAAGGATCTAGTTTCTGTTTCTGCATTGTTCTTGCATCTTGTTTCTGATTTTGTAGGGCATTTTTGTTTGTACTCCTTTTCTCATTACAAAAAATTCAGAAAAGGAAGTACTTGCATCTTGTTTCTGCATTCGTACTTTCTGCAAAGTTTCTGGTTTACTTAAAAATGTTCTGGCATTCCTACGAAAAAATTATTGCGGGCGTCGATCCTGATTATGTTATCTTCAAAGGAGAGAACAATTATATTCTTACTCCTTTAGTGAACAGTTTTCTAATGTTTGAAAAATTCTACAGGATCTTATTTGAATACGATTAAGAGGACAGTTAAATACCTTTGCCCTGCTGATATTGTTCCTCCATATATCGATGTTGATCTTAGCGAGTTAGATGTTGGGCAAAAGTTGGTTACGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTCTTCGGTCAAAGGACGAGCCTGTTTGTAAGATTGCAGGAGCCCGAGCTTCCGATCAACAAAGGAAATCAAAGTAACTCTGGACTATCAATATCTTAGTTGCTTCGACATTAAAGCTTCTTCTGTTAAAGAAGACAATGTTTGTAAGATTATGGGATCCAGGATTTCCTGATCAGCCAAGAAATCTTAATAATCCCTCCAGATTTTGATCACCGTGGGTTTTAAATTTTTTCTCCCAATACTTTAGAAAGCAAAGTACGTTGTTTGTTGTTGGTTCACTAGCATTTATTTGATCTCTCTGTTCATGGAATGGCTTGAACTCTGATGAGCAAGAATATTGTGGTAACTTTTTAGAGGGAGTTTTTAGCTTAATTGGAGGAGGCATTTGTAACATATTATACAATATTTCCTTGAAATTGGTTTCCCATTGCATTGGTTAATGTTATTCAAGGGGCAAATGCTATTGGTTCCTAAATTTTAAAGAGCACTTGGCTGGG

mRNA sequence

CCGGAAAGAAGGAGTACATCTTAACCAGCAGGTTCAGTCGACAACTCCAGCCGCCTCACCTCAAGCTCTCGCTCTTATTTCACTCCAACGGCGACGGCACCAGCAGCCTGCGGCGAAGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTTCAACCTCTACGGCCGTCTCAACGGAACTCACCTTCTACGAATTGACCTAAATCGGTACAATACCCCTTCAGATTTCTCCACTAAAACCCTCCCTTAAGCCCTTCCGTTCATCCTTCTCCGCCCAATGCTACGCTTCTACCACTCTCCTACTCTCTCAAGAGTCCTCCTCCTCCGGAGGTTTTCCTCCGCTGCCACCGCCACCGCTCCACCCCTTGATTCCGATCCCGAACCTTCATTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCGAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGAAAGAACATTTCCGCTAAAGAGCGCAAGGTTGGCCGCGTTCCAAGCATCGTGTTCGAGCAAGAGGACGGTCAGCATGGCGGAAATAAGCGTCTCATATCTGTACGGACTAATCAAATTAGGAAGCTTGTAAATCATCTAGGTCGCTCTTTCTTCCTCTCCAGGCTTTTTGATCTCGAAGTTCGGTCCGAGTTCGAATCCGGGGATATTGTTGAGAAGGTTCGGGTCTTACCTCGGAAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACACGCTTTATTAAAAGTTGATGTACCTCTTGTTTTCCGAGGGGAAGATGTATGCCCTGGATTGAGGAAAGGTACTGCTGCAAGACTAAGATCTTATTTGAATACGATTAAGAGGACAGTTAAATACCTTTGCCCTGCTGATATTGTTCCTCCATATATCGATGTTGATCTTAGCGAGTTAGATGTTGGGCAAAAGTTGGTTACGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTCTTCGGTCAAAGGACGAGCCTGTTTGTAAGATTGCAGGAGCCCGAGCTTCCGATCAACAAAGGAAATCAAAGTAACTCTGGACTATCAATATCTTAGTTGCTTCGACATTAAAGCTTCTTCTGTTAAAGAAGACAATGTTTGTAAGATTATGGGATCCAGGATTTCCTGATCAGCCAAGAAATCTTAATAATCCCTCCAGATTTTGATCACCGTGGGTTTTAAATTTTTTCTCCCAATACTTTAGAAAGCAAAGTACGTTGTTTGTTGTTGGTTCACTAGCATTTATTTGATCTCTCTGTTCATGGAATGGCTTGAACTCTGATGAGCAAGAATATTGTGGTAACTTTTTAGAGGGAGTTTTTAGCTTAATTGGAGGAGGCATTTGTAACATATTATACAATATTTCCTTGAAATTGGTTTCCCATTGCATTGGTTAATGTTATTCAAGGGGCAAATGCTATTGGTTCCTAAATTTTAAAGAGCACTTGGCTGGG

Coding sequence (CDS)

ATGCTACGCTTCTACCACTCTCCTACTCTCTCAAGAGTCCTCCTCCTCCGGAGGTTTTCCTCCGCTGCCACCGCCACCGCTCCACCCCTTGATTCCGATCCCGAACCTTCATTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCGAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGAAAGAACATTTCCGCTAAAGAGCGCAAGGTTGGCCGCGTTCCAAGCATCGTGTTCGAGCAAGAGGACGGTCAGCATGGCGGAAATAAGCGTCTCATATCTGTACGGACTAATCAAATTAGGAAGCTTGTAAATCATCTAGGTCGCTCTTTCTTCCTCTCCAGGCTTTTTGATCTCGAAGTTCGGTCCGAGTTCGAATCCGGGGATATTGTTGAGAAGGTTCGGGTCTTACCTCGGAAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACACGCTTTATTAAAAGTTGATGTACCTCTTGTTTTCCGAGGGGAAGATGTATGCCCTGGATTGAGGAAAGGTACTGCTGCAAGACTAAGATCTTATTTGAATACGATTAAGAGGACAGTTAAATACCTTTGCCCTGCTGATATTGTTCCTCCATATATCGATGTTGATCTTAGCGAGTTAGATGTTGGGCAAAAGTTGGTTACGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTCTTCGGTCAAAGGACGAGCCTGTTTGTAAGATTGCAGGAGCCCGAGCTTCCGATCAACAAAGGAAATCAAAGTAA

Protein sequence

MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKLLRSKDEPVCKIAGARASDQQRKSK

Homology

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy Swiss-Prot
Match: Q219F9 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) OX=316056 GN=rplY PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.8e-18
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 0


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKR--LISVRTNQIRKLVNHLGRSF 116
           A  R   GK  +  ER+ GRVP +++       G NK    ISV   ++R  +   GR  
Sbjct: 9   ATARPAGGKGAARAERRAGRVPGVIY-------GDNKPPVTISVDDTELRARI-LAGR-- 68

Query: 117 FLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLV 176
           FL+ +FD+E+          +K RV+PR  HL    D P++V F+R    AL++V VPL 
Sbjct: 69  FLTTIFDVELDG--------QKHRVIPRDFHLDPVRDFPIHVDFLRLGEGALIRVSVPLH 128

Query: 177 FRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDL 236
            +  +  PG+++G        +N +  TV+    A+ +P +I+ D+S+LD+G  L   D+
Sbjct: 129 LKNAEGAPGVKRG------GTVNIVTHTVELEAEAESIPQFIEADVSQLDIGSSLHLSDV 177

Query: 237 KVHPALKLLRSKD 248
            +   +K L  +D
Sbjct: 189 VLPKGVKTLSRED 177

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BLAST of CmoCh06G009270.1 vs. ExPASy Swiss-Prot
Match: Q3SPM6 (50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=rplY PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-17
Identity = 60/194 (30.93%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNK---RLISVRTNQIRKLVNHLGRS 116
           A  R  SGK  +  ER+ GRVP++++        GNK   + ISV   ++R+ +   GR 
Sbjct: 9   ATARPKSGKGAARAERRAGRVPAVIY--------GNKQPPQPISVEEPELRQRI-LAGR- 68

Query: 117 FFLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPL 176
            FL+ +FD+ +          +K RV+PR  HL    D P++V F+R    A ++V VPL
Sbjct: 69  -FLTTIFDINLDG--------KKHRVIPRDFHLDPVKDFPIHVDFMRLGEGATIRVSVPL 128

Query: 177 VFRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGD 236
                DV PG+++G        +N +   +   C A+ +P +I+ D+  L++   L   D
Sbjct: 129 RLLKADVAPGVKRG------GTVNLVTHAIDVECAAESIPQFIEADVGALEISHSLHLSD 177

Query: 237 LKVHPALKLLRSKD 248
           L++ P +K L  +D
Sbjct: 189 LQLPPGVKPLARED 177

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy Swiss-Prot
Match: Q6N1P8 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) OX=258594 GN=rplY PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 4.0e-17
Identity = 56/191 (29.32%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFL 116
           A  R  SGK  +  ER+ GRVP +++       G N+  + +   + ++L   +    FL
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIY-------GDNQSPLPISVEE-KELRLRILAGRFL 68

Query: 117 SRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFR 176
           + +FD+ +          +K RV+PR  HL    D P++V F+R  + A ++V VPL  +
Sbjct: 69  TTVFDVVLDG--------KKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLK 128

Query: 177 GEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKV 236
           G +V PG+++G         N +  TV+   PA+ +P +I+ D+S LD+G  L   D+ +
Sbjct: 129 GLEVAPGVKRG------GTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIAL 177

Query: 237 HPALKLLRSKD 248
              +K +   D
Sbjct: 189 PTGVKSVSRDD 177

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy Swiss-Prot
Match: B3Q7X4 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960 GN=rplY PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.0e-17
Identity = 56/191 (29.32%), Postives = 97/191 (50.79%), Query Frame = 0


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFL 116
           A  R  SGK  +  ER+ GRVP +++       G N+  + +   + ++L   +    FL
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIY-------GDNQSPLPISVEE-KELRLRILAGRFL 68

Query: 117 SRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFR 176
           + +FD+ +          +K RV+PR  HL    D P++V F+R  + A ++V VPL  +
Sbjct: 69  TTVFDVVLDG--------KKHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLK 128

Query: 177 GEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKV 236
           G +V PG+++G         N +  TV+   PA+ +P +I+ D+S LD+G  L   D+ +
Sbjct: 129 GLEVAPGVKRG------GTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIAL 177

Query: 237 HPALKLLRSKD 248
              +K +   D
Sbjct: 189 PTGVKSVSRDD 177

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy Swiss-Prot
Match: Q131L9 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) OX=316057 GN=rplY PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-16
Identity = 62/211 (29.38%), Postives = 106/211 (50.24%), Query Frame = 0


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNK--RLISVRTNQIRKLVNHLGRSF 116
           A  R  SGK  +  ER+ GRVP +++       G N+    ISV   ++R  +   GR  
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIY-------GDNQPPLPISVEDKELRLRI-LAGR-- 68

Query: 117 FLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLV 176
           FL+ +FD+ +          +K RV+PR  HL    D P++V F+R  + A ++V VPL 
Sbjct: 69  FLTTVFDVVLDG--------KKHRVIPRDYHLDPVKDFPIHVDFLRLGAGATIRVSVPLH 128

Query: 177 FRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDL 236
            +G +  PG+++G         N +  TV    PA+ +P +I+ D+S LD+G  L   D+
Sbjct: 129 LKGLESAPGVKRG------GTFNIVTHTVDLEAPAESIPQFIEADVSTLDIGVSLHLSDI 188

Query: 237 KVHPALKLLRSKDEPVCKIAGARASDQQRKS 266
            +   +K +  +D  +  I      ++++K+
Sbjct: 189 ALPNGVKSVSREDVTLVTIVPPSGFNEEQKA 195

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy TrEMBL
Match: A0A6J1GGM6 (uncharacterized protein LOC111453766 OS=Cucurbita moschata OX=3662 GN=LOC111453766 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.3e-140
Identity = 260/266 (97.74%), Postives = 260/266 (97.74%), Query Frame = 0


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR
Sbjct: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF
Sbjct: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV
Sbjct: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
           CPGLRKG      SYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL
Sbjct: 181 CPGLRKG------SYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KLLRSKDEPVCKIAGARASDQQRKSK
Sbjct: 241 KLLRSKDEPVCKIAGARASDQQRKSK 260

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy TrEMBL
Match: A0A6J1ICC4 (uncharacterized protein LOC111471898 OS=Cucurbita maxima OX=3661 GN=LOC111474217 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.1e-137
Identity = 254/266 (95.49%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPK+AETILAIPR
Sbjct: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKFAETILAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           SISGKNISAKERKVGR PSIVFEQEDGQHGGNKRLISVRTNQ+RKLVNHLGRSFFLSRLF
Sbjct: 61  SISGKNISAKERKVGRTPSIVFEQEDGQHGGNKRLISVRTNQVRKLVNHLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV
Sbjct: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
           CPGLRKG      SYLNTIKRTVKYLCPADIVPP+IDVDLSELDVGQKLV GDLKVHPAL
Sbjct: 181 CPGLRKG------SYLNTIKRTVKYLCPADIVPPFIDVDLSELDVGQKLVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KLL+SKDEPVCKIAGARASDQQRKSK
Sbjct: 241 KLLQSKDEPVCKIAGARASDQQRKSK 260

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy TrEMBL
Match: A0A6J1D2A7 (uncharacterized protein LOC111016648 OS=Momordica charantia OX=3673 GN=LOC111016648 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.4e-128
Identity = 238/266 (89.47%), Postives = 247/266 (92.86%), Query Frame = 0


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           MLRFYHSPTL+RVLLLRRFSSAATA    LDSDPEP FSYLE  P+PDPKYAETILA+PR
Sbjct: 1   MLRFYHSPTLTRVLLLRRFSSAATAAV--LDSDPEPPFSYLEDLPRPDPKYAETILAVPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           SISGKNISAKERK GR PSIVFEQEDGQHGGNKRLISV TNQIRKLVNHLGRSFFLSRLF
Sbjct: 61  SISGKNISAKERKAGRTPSIVFEQEDGQHGGNKRLISVPTNQIRKLVNHLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEVR EFESG+I+EKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPL+FRGEDV
Sbjct: 121 DLEVRPEFESGEIIEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLMFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
           CPGLRKG      SYLNTIK+TVKYLCPADI+PPYIDVDLSELDVGQKLV GDLKVHPAL
Sbjct: 181 CPGLRKG------SYLNTIKKTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KLL+SKDEPVCKIAGAR SDQQRKSK
Sbjct: 241 KLLQSKDEPVCKIAGARVSDQQRKSK 258

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy TrEMBL
Match: A0A5D3DPH9 (50S ribosomal protein L25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007100 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.9e-125
Identity = 237/268 (88.43%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MLRFYHSPTLSRVLLLRRFSSAAT--ATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAI 60
           MLRFYHSPTLSRVLL RRFSSAAT  AT P LDS  EP FSYLEGFPKPDPKYAETILAI
Sbjct: 1   MLRFYHSPTLSRVLLHRRFSSAATAIATDPALDSVSEPLFSYLEGFPKPDPKYAETILAI 60

Query: 61  PRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSR 120
           PRS SGK I AKERKVGRVPSI+FEQEDGQHGGNKRLISVRTNQI KLV +LGRSFFLSR
Sbjct: 61  PRSTSGKTICAKERKVGRVPSILFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSR 120

Query: 121 LFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGE 180
           LFDLEV S+FESGDIVEKVRVLPR+IHLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGE
Sbjct: 121 LFDLEVLSDFESGDIVEKVRVLPRQIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGE 180

Query: 181 DVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHP 240
           DVCPGLRKG      SYLNTIKRTVKYLCPADI+PPYIDVDLSELDVGQKLV GDLKVHP
Sbjct: 181 DVCPGLRKG------SYLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHP 240

Query: 241 ALKLLRSKDEPVCKIAGARASDQQRKSK 267
           ALKL++SKDEPVCKIAGAR SDQQ+KSK
Sbjct: 241 ALKLVKSKDEPVCKIAGARVSDQQKKSK 262

[Close]

BLAST of CmoCh06G009270.1 vs. ExPASy TrEMBL
Match: A0A1S3B7N9 (50S ribosomal protein L25 OS=Cucumis melo OX=3656 GN=LOC103486925 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.9e-125
Identity = 237/268 (88.43%), Postives = 246/268 (91.79%), Query Frame = 0


Query: 1   MLRFYHSPTLSRVLLLRRFSSAAT--ATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAI 60
           MLRFYHSPTLSRVLL RRFSSAAT  AT P LDS  EP FSYLEGFPKPDPKYAETILAI
Sbjct: 1   MLRFYHSPTLSRVLLHRRFSSAATAIATDPALDSVSEPLFSYLEGFPKPDPKYAETILAI 60

Query: 61  PRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSR 120
           PRS SGK I AKERKVGRVPSI+FEQEDGQHGGNKRLISVRTNQI KLV +LGRSFFLSR
Sbjct: 61  PRSTSGKTICAKERKVGRVPSILFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSR 120

Query: 121 LFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGE 180
           LFDLEV S+FESGDIVEKVRVLPR+IHLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGE
Sbjct: 121 LFDLEVLSDFESGDIVEKVRVLPRQIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGE 180

Query: 181 DVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHP 240
           DVCPGLRKG      SYLNTIKRTVKYLCPADI+PPYIDVDLSELDVGQKLV GDLKVHP
Sbjct: 181 DVCPGLRKG------SYLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHP 240

Query: 241 ALKLLRSKDEPVCKIAGARASDQQRKSK 267
           ALKL++SKDEPVCKIAGAR SDQQ+KSK
Sbjct: 241 ALKLVKSKDEPVCKIAGARVSDQQKKSK 262

[Close]

BLAST of CmoCh06G009270.1 vs. TAIR 10
Match: AT4G23620.1 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain )

HSP 1 Score: 367.5 bits (942), Expect = 9.3e-102
Identity = 184/250 (73.60%), Postives = 214/250 (85.60%), Query Frame = 0


Query: 16  LRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGKNISAKERKVG 75
           LR FS AA A A  LD   E   +YL GFP+PDPK+AETILA+PRS+SGK+ISAKERK G
Sbjct: 16  LRLFSPAANA-ALSLDHIQETQLTYLPGFPRPDPKHAETILAVPRSVSGKSISAKERKAG 75

Query: 76  RVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVE 135
           RVPSI+FEQEDGQHGGNKRLISV+TNQIRKLVNHLG SFFLSRLFD+EVR+E  S +++E
Sbjct: 76  RVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEIGSDEVIE 135

Query: 136 KVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAARLRSY 195
           KVR LPR IHLH+GTDAPLNVTFIRAP  ALLKVD+PLVF G+DV PGL+KG +      
Sbjct: 136 KVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKKGAS------ 195

Query: 196 LNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKLLRSKDEPVCKIAG 255
           LNTIKRTVK+LCPA+I+PPYI+VDLS+LD+GQKLV GDLKVHPALKL++SKDEP+ K+AG
Sbjct: 196 LNTIKRTVKFLCPAEIIPPYIEVDLSQLDIGQKLVMGDLKVHPALKLIKSKDEPIVKVAG 255

Query: 256 ARASDQQRKS 266
            R +D Q+KS
Sbjct: 256 GRVTDTQKKS 258

[Close]

BLAST of CmoCh06G009270.1 vs. TAIR 10
Match: AT4G23620.2 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain )

HSP 1 Score: 360.5 bits (924), Expect = 1.1e-99
Identity = 185/263 (70.34%), Postives = 215/263 (81.75%), Query Frame = 0


Query: 16  LRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGKNISAKERKVG 75
           LR FS AA A A  LD   E   +YL GFP+PDPK+AETILA+PRS+SGK+ISAKERK G
Sbjct: 16  LRLFSPAANA-ALSLDHIQETQLTYLPGFPRPDPKHAETILAVPRSVSGKSISAKERKAG 75

Query: 76  RVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVE 135
           RVPSI+FEQEDGQHGGNKRLISV+TNQIRKLVNHLG SFFLSRLFD+EVR+E  S +++E
Sbjct: 76  RVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEIGSDEVIE 135

Query: 136 KVRVLPR-------------KIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCP 195
           KVR LPR             KIHLH+GTDAPLNVTFIRAP  ALLKVD+PLVF G+DV P
Sbjct: 136 KVRALPRAVKSPFLSLMKLIKIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSP 195

Query: 196 GLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKL 255
           GL+KG +      LNTIKRTVK+LCPA+I+PPYI+VDLS+LD+GQKLV GDLKVHPALKL
Sbjct: 196 GLKKGAS------LNTIKRTVKFLCPAEIIPPYIEVDLSQLDIGQKLVMGDLKVHPALKL 255

Query: 256 LRSKDEPVCKIAGARASDQQRKS 266
           ++SKDEP+ K+AG R +D Q+KS
Sbjct: 256 IKSKDEPIVKVAGGRVTDTQKKS 271

[Close]

BLAST of CmoCh06G009270.1 vs. TAIR 10
Match: AT5G66860.1 (Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain )

HSP 1 Score: 158.7 bits (400), Expect = 6.5e-39
Identity = 90/209 (43.06%), Postives = 130/209 (62.20%), Query Frame = 0


Query: 53  ETILAIPRSISGKNISAKERKVGRVPSIVFEQE----DGQHGG--NKRLISVRTNQIRKL 112
           +TI AIPR  +G+ +SA++R +GR+P++VF Q     D    G   K+L++    QI+ +
Sbjct: 34  QTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSI 93

Query: 113 VNHLGRSFFLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAL 172
           ++ +G  FF S  F L++R+   S  +VE  RVLP K+H    T   LN+ F+ A     
Sbjct: 94  IDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEK 153

Query: 173 LKVDVPLVFRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVG 232
           LKVDVP+VF+G D CPGL+KG        L TI+ T+K L PA+ +P  I+VD+S LD+ 
Sbjct: 154 LKVDVPVVFKGLDHCPGLQKG------GNLRTIRSTLKLLGPAEHIPSKIEVDVSNLDIE 213

Query: 233 QKLVTGDLKVHPALKLLRSKDE--PVCKI 254
            K++  D+  HP+LKLL SK+E  PVCKI
Sbjct: 214 DKVLLQDVVFHPSLKLL-SKNETMPVCKI 235

The following BLAST results are available for this feature:

BLAST of CmoCh06G009270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q219F9	4.8e-18	31.61	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) OX=31605...	[more]
Q3SPM6	1.8e-17	30.93	50S ribosomal protein L25 OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 1...	[more]
Q6N1P8	4.0e-17	29.32	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CG...	[more]
B3Q7X4	4.0e-17	29.32	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) OX=395960...	[more]
Q131L9	1.2e-16	29.38	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) OX=316057...	[more]

BLAST of CmoCh06G009270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGM6	2.3e-140	97.74	uncharacterized protein LOC111453766 OS=Cucurbita moschata OX=3662 GN=LOC1114537...	[more]
A0A6J1ICC4	1.1e-137	95.49	uncharacterized protein LOC111471898 OS=Cucurbita maxima OX=3661 GN=LOC111474217...	[more]
A0A6J1D2A7	3.4e-128	89.47	uncharacterized protein LOC111016648 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5D3DPH9	7.9e-125	88.43	50S ribosomal protein L25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B7N9	7.9e-125	88.43	50S ribosomal protein L25 OS=Cucumis melo OX=3656 GN=LOC103486925 PE=4 SV=1	[more]

BLAST of CmoCh06G009270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23620.1	9.3e-102	73.60	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	[more]
AT4G23620.2	1.1e-99	70.34	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	[more]
AT5G66860.1	6.5e-39	43.06	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029751	Ribosomal protein L25	PFAM	PF01386	Ribosomal_L25p	coord: 57..158 e-value: 4.6E-9 score: 36.7
IPR029751	Ribosomal protein L25	CDD	cd00495	Ribosomal_L25_TL5_CTC	coord: 54..160 e-value: 2.53406E-12 score: 59.4062
IPR037121	Ribosomal protein L25, C-terminal	GENE3D	2.170.120.20	Ribosomal protein L25, beta domain	coord: 165..262 e-value: 2.9E-13 score: 51.9
IPR020056	Ribosomal protein L25/Gln-tRNA synthetase, N-terminal	GENE3D	2.40.240.10	Ribosomal Protein L25; Chain P	coord: 54..161 e-value: 6.0E-8 score: 34.7
IPR020057	Ribosomal protein L25, beta domain	PFAM	PF14693	Ribosomal_TL5_C	coord: 167..256 e-value: 1.1E-15 score: 57.7
None	No IPR available	PANTHER	PTHR33284:SF4	BNAA01G13300D PROTEIN	coord: 11..264
None	No IPR available	PANTHER	PTHR33284	RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN	coord: 11..264
IPR011035	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	SUPERFAMILY	50715	Ribosomal protein L25-like	coord: 60..255

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G009270	CmoCh06G009270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G009270.1:exon:4120	CmoCh06G009270.1:exon:4120	exon
CmoCh06G009270.1:exon:4121	CmoCh06G009270.1:exon:4121	exon
CmoCh06G009270.1:exon:4122	CmoCh06G009270.1:exon:4122	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G009270.1:five_prime_utr	CmoCh06G009270.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G009270.1:cds	CmoCh06G009270.1:cds	CDS
CmoCh06G009270.1:cds	CmoCh06G009270.1:cds_2	CDS
CmoCh06G009270.1:cds	CmoCh06G009270.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G009270.1:three_prime_utr	CmoCh06G009270.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G009270.1	CmoCh06G009270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome