CmoCh04G025470.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G025470.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein MKS1-like
Location	Cmo_Chr04: 18683438 .. 18683911 (+)
Sequence length	474
RNA-Seq Expression	CmoCh04G025470.1
Synteny	CmoCh04G025470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGTCATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGGTCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAGTTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTCATTTTCATTAA

mRNA sequence

ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGTCATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGGTCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAGTTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTCATTTTCATTAA

Coding sequence (CDS)

ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGTCATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGGTCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAGTTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGATAACTTCCCTCATTTTCATTAA

Protein sequence

MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH

Homology

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 14  PSALKISKHSHNIEKPPPPQ--------HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQ 73
           P  LK++K SH I+KPP P           PVIIYT +P+IIHTNP  F  LVQ+LTG  
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTGMT 102

Query: 74  PDTPDIHQVQS-------KTISMSMSMPT 88
               D+    +       K+I+ ++S PT
Sbjct: 103 HSDEDLGGGNAMTDPGVVKSINRTVSEPT 131

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 3  ERKHLQLHGHRPSALKISKHSHNIEKPP----PPQHR----------PVIIYTDSPKIIH 62
          +++ LQ+ G RPS L + K SH I+KPP    PP +R          PV+IY  SPK++H
Sbjct: 18 QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63 TNPTQFKDLVQRLTG 64
             ++F ++VQRLTG
Sbjct: 78 ATASEFMNVVQRLTG 92

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-07
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 8  QLHGHRPSALKISKHSHNIEK------PPPPQHR--PVIIYTDSPKIIHTNPTQFKDLVQ 64
          +++G RPS+LK++  SH I+K       P P  R  PVIIY  SPK+IHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 37/100 (37.00%), Postives = 44/100 (44.00%), Query Frame = 0


Query: 11  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIH 70
           G +P+ LK+   SH I K PP                      P   PV IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS 89
           T+P  F  LVQRLTG         Q  + T S S S  TS
Sbjct: 73  THPNNFMTLVQRLTG---------QTSTSTTSSSSSSSTS 103

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy TrEMBL
Match: A0A6J1H588 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111460606 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60
           MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60

Query: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPP 120
           LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPP
Sbjct: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPP 120

Query: 121 SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 158
           SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
Sbjct: 121 SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 157

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy TrEMBL
Match: A0A6J1FKV1 (protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.1e-33
Identity = 95/163 (58.28%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60
           MAERK LQL G RP+ALKI+K SH I KPP   HRPVIIYT SPK+IHT+PTQFKDLVQR
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGKPP---HRPVIIYTVSPKVIHTDPTQFKDLVQR 60

Query: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI----- 120
           LTG +P + D H   + T+ M      S+  QG E VG    GIL PT  LL PI     
Sbjct: 61  LTGHKPSSHDSHHPPNTTMIM------STNHQGTERVG---HGILSPTPGLLPPIPANIF 120

Query: 121 MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH 158
            P PP  S +LS LTH+F+D S IAPN F+ SLDFF NFP  H
Sbjct: 121 TPTPPQ-SAELSPLTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy TrEMBL
Match: A0A6J1JW33 (protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 92/163 (56.44%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60
           MAERK +QL G RP+ALKI+K SH I KPP   HRPVIIY+ SPK+IHT+PTQFKDLVQR
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPP---HRPVIIYSVSPKVIHTDPTQFKDLVQR 60

Query: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI----- 120
           LTG +P + D H   + T+ M      S+   G E VG    GIL PT  LL PI     
Sbjct: 61  LTGHKPSSHDSHHPPNTTMIM------STNPHGAERVG---HGILSPTPGLLPPIPANIF 120

Query: 121 MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH 158
            P PP  S +LS LTH+F+D S IAPN F+ SLDFF NFP  H
Sbjct: 121 TPTPPQ-SAELSPLTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy TrEMBL
Match: A0A0A0KI80 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKP--PPPQ-HRPVIIYTDSPKIIHTNPTQFKDL 60
           M E+K LQL G RPSALKI+K SH I+KP  PPPQ HRPVIIYT SPKIIHT+PT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTG-CQPDTPDI-------HQVQSKTISMSMSMPTSSTEQGVESVGCF----PT-GI 120
           VQRLTG  QP +          H      IS+  +      + GV+ +       PT G+
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPTSELLLPIMPMPPSAST--DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPHFH 158
           LPP S  +    P  P+A+   DL+SLT +F D S IA N+F+SSLDFF  NFP FH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of CmoCh04G025470.1 vs. ExPASy TrEMBL
Match: A0A5A7UZA1 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00830 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-25
Identity = 92/178 (51.69%), Postives = 108/178 (60.67%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKP--PPPQ-HRPVIIYTDSPKIIHTNPTQFKDL 60
           M E+K LQL G RPSALKI+K SH I+KP  PPPQ HRPVIIYT SPKIIHT+PTQFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDL 60

Query: 61  VQRLTGCQ--PDTPDIHQV-----QSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSE 120
           VQRLTG    P +   H +         IS+ ++        GV+ +     GIL PT  
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRI--IAHGILSPTPG 120

Query: 121 LLLPIMPM-----PPSAST----DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPHFH 158
           LL PI P      PP A+     DL+SLT +F D S I  N+F+ SLDFF  NFP FH
Sbjct: 121 LLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 176

[Close]

BLAST of CmoCh04G025470.1 vs. NCBI nr
Match: XP_022959576.1 (protein MKS1-like [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 5.3e-83
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60
           MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60

Query: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPP 120
           LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPP
Sbjct: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPIMPMPP 120

Query: 121 SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 158
           SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
Sbjct: 121 SASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 157

[Close]

BLAST of CmoCh04G025470.1 vs. NCBI nr
Match: KAG6602164.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.4 bits (729), Expect = 2.9e-73
Identity = 148/163 (90.80%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEK------PPPPQHRPVIIYTDSPKIIHTNPTQF 60
           MAERKHLQLHGHRPSALKISKHSHNI+K      PPPPQHRPVIIYTDSPKIIHTNPTQF
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIKKPPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQF 60

Query: 61  KDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLP 120
           KDLVQRLTGCQ DTPDIHQVQSKTISMSMSMPTSSTEQGVESVG FPTGILPPTSELL P
Sbjct: 61  KDLVQRLTGCQHDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGRFPTGILPPTSELLPP 120

Query: 121 IMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 158
           IMP  PS S DLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Sbjct: 121 IMPTLPSTSMDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 163

[Close]

BLAST of CmoCh04G025470.1 vs. NCBI nr
Match: KAG7032856.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.6 bits (719), Expect = 4.2e-72
Identity = 147/162 (90.74%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEK-----PPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERKHLQLHGHRPSALKISKHSHNI+K     PPP QHRPVIIYTDSPKIIHTNPTQFK
Sbjct: 1   MAERKHLQLHGHRPSALKISKHSHNIKKPPPLPPPPLQHRPVIIYTDSPKIIHTNPTQFK 60

Query: 61  DLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI 120
           DLVQRLTGCQ DTPDIHQVQSKTISMSMSMPTSSTEQGVESVG FPTGILPPTSELL PI
Sbjct: 61  DLVQRLTGCQLDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGRFPTGILPPTSELLPPI 120

Query: 121 MPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 158
           MP  PS S DLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Sbjct: 121 MPTLPSTSMDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 162

[Close]

BLAST of CmoCh04G025470.1 vs. NCBI nr
Match: XP_023542758.1 (protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 138/162 (85.19%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEK-----PPPPQHRPVIIYTDSPKIIHTNPTQFK 60
           MAERKHL LHGHRPSALKISKHSHNI+K     PPPPQHRPVIIYTDSPKIIHTNPTQFK
Sbjct: 1   MAERKHLHLHGHRPSALKISKHSHNIKKPPPLPPPPPQHRPVIIYTDSPKIIHTNPTQFK 60

Query: 61  DLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI 120
           DLVQRLTG QP++PDIHQVQSKTISMS SMPTSSTEQGVES+  FPTGIL PT E L   
Sbjct: 61  DLVQRLTGYQPNSPDIHQVQSKTISMSTSMPTSSTEQGVESLSRFPTGILSPTPEFL--- 120

Query: 121 MPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH 158
              PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Sbjct: 121 ---PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH 156

[Close]

BLAST of CmoCh04G025470.1 vs. NCBI nr
Match: KAG6578908.1 (Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-33
Identity = 96/163 (58.90%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQR 60
           MAERK LQL G RP+ALKI+K SH I KPP   HRPVIIYT SPK+IHT+PTQFKDLVQR
Sbjct: 13  MAERKELQLQGPRPAALKITKDSHKIGKPP---HRPVIIYTVSPKVIHTDPTQFKDLVQR 72

Query: 61  LTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSELLLPI----- 120
           LTG +P + D H   + T+ M      S+  QG E VG    GIL PT  LL PI     
Sbjct: 73  LTGHKPSSHDSHHPPNTTMIM------STNHQGAERVG---HGILSPTPGLLPPIPANIF 132

Query: 121 MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH 158
            P PP  S +LS LTH+F+D S IAPN F+SSLDFF NFP  H
Sbjct: 133 TPTPPQ-SAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 162

[Close]

BLAST of CmoCh04G025470.1 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 14  PSALKISKHSHNIEKPPPPQ--------HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQ 73
           P  LK++K SH I+KPP P           PVIIYT +P+IIHTNP  F  LVQ+LTG  
Sbjct: 43  PPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTGMT 102

Query: 74  PDTPDIHQVQS-------KTISMSMSMPT 88
               D+    +       K+I+ ++S PT
Sbjct: 103 HSDEDLGGGNAMTDPGVVKSINRTVSEPT 131

[Close]

BLAST of CmoCh04G025470.1 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-09
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 3  ERKHLQLHGHRPSALKISKHSHNIEKPP----PPQHR----------PVIIYTDSPKIIH 62
          +++ LQ+ G RPS L + K SH I+KPP    PP +R          PV+IY  SPK++H
Sbjct: 18 QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63 TNPTQFKDLVQRLTG 64
             ++F ++VQRLTG
Sbjct: 78 ATASEFMNVVQRLTG 92

[Close]

BLAST of CmoCh04G025470.1 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-08
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 8  QLHGHRPSALKISKHSHNIEK------PPPPQHR--PVIIYTDSPKIIHTNPTQFKDLVQ 64
          +++G RPS+LK++  SH I+K       P P  R  PVIIY  SPK+IHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of CmoCh04G025470.1 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 6.7e-07
Identity = 39/101 (38.61%), Postives = 45/101 (44.55%), Query Frame = 0


Query: 11  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIH 70
           G RP  LK+   SH I K PP                      P   PVIIYT SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71  TNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSS 90
           T+P  F  LVQRLTG         +  + T S S S  TS+
Sbjct: 73  THPNNFMTLVQRLTG---------KTSTSTTSSSYSSSTSA 104

[Close]

BLAST of CmoCh04G025470.1 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 37/100 (37.00%), Postives = 44/100 (44.00%), Query Frame = 0


Query: 11  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIH 70
           G +P+ LK+   SH I K PP                      P   PV IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS 89
           T+P  F  LVQRLTG         Q  + T S S S  TS
Sbjct: 73  THPNNFMTLVQRLTG---------QTSTSTTSSSSSSSTS 103

The following BLAST results are available for this feature:

BLAST of CmoCh04G025470.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	2.6e-08	41.57	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q8LGD5	3.4e-08	42.67	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
Q9CA36	6.5e-07	50.00	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4HWF9	4.6e-05	37.00	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of CmoCh04G025470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H588	2.6e-83	100.00	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111460606 PE=4 SV=1	[more]
A0A6J1FKV1	7.1e-33	58.28	protein MKS1-like OS=Cucurbita moschata OX=3662 GN=LOC111445144 PE=4 SV=1	[more]
A0A6J1JW33	2.3e-31	56.44	protein MKS1-like OS=Cucurbita maxima OX=3661 GN=LOC111489392 PE=4 SV=1	[more]
A0A0A0KI80	1.1e-25	51.41	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=...	[more]
A0A5A7UZA1	1.9e-25	51.69	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G008...	[more]

BLAST of CmoCh04G025470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959576.1	5.3e-83	100.00	protein MKS1-like [Cucurbita moschata]	[more]
KAG6602164.1	2.9e-73	90.80	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG7032856.1	4.2e-72	90.74	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_023542758.1	3.5e-66	85.19	protein MKS1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6578908.1	3.0e-33	58.90	Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016429.1 Prot...	[more]

BLAST of CmoCh04G025470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	1.9e-09	41.57	VQ motif-containing protein	[more]
AT3G18690.1	2.4e-09	42.67	MAP kinase substrate 1	[more]
AT1G68450.1	4.6e-08	50.00	VQ motif-containing protein	[more]
AT1G21326.1	6.7e-07	38.61	VQ motif-containing protein	[more]
AT1G21320.1	3.3e-06	37.00	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..66 e-value: 2.2E-10 score: 39.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR33143:SF6	F16F4.1 PROTEIN	coord: 5..88
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 5..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G025470	CmoCh04G025470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025470.1:exon:1899	CmoCh04G025470.1:exon:1899	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025470.1:cds	CmoCh04G025470.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G025470.1	CmoCh04G025470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus